Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:47:34 (22785): wrapper (7.7.26015): starting
02:47:34 (22785): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 02:47:34] Arguments: --nthreads 8
[2025-11-23 02:47:34] Threads: 8
[2025-11-23 02:47:34] Checking for CVMFS
[2025-11-23 02:47:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 02:47:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 02:47:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 02:47:34] /usr/bin/cvmfs_config: line 944: cd: /cvmfs/ligo.osgstorage.org: Permission denied
[2025-11-23 02:47:34] 
[2025-11-23 02:47:34] CVMFS is ok
[2025-11-23 02:47:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 02:47:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 02:47:34] Further information can be found at the LHC@home message board.
[2025-11-23 02:47:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 02:47:34] Checking for apptainer binary...
[2025-11-23 02:47:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 02:47:34] Running /usr/bin/apptainer --version
[2025-11-23 02:47:34] apptainer version 1.3.2-1.el7
[2025-11-23 02:47:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 02:47:35] c-9-30.aglt2.org
[2025-11-23 02:47:35] apptainer works
[2025-11-23 02:47:35] Set ATHENA_PROC_NUMBER=8
[2025-11-23 02:47:35] Set ATHENA_CORE_NUMBER=8
[2025-11-23 02:47:35] Starting ATLAS job with PandaID=6895338660
[2025-11-23 02:47:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 19:46:34]  *** The last 200 lines of the pilot log: ***
[2025-11-23 19:46:34] 2025-11-24 00:45:36,670 | INFO     | monitor loop #4209: job 0:6895338660 is in state 'finished'
[2025-11-23 19:46:34] 2025-11-24 00:45:36,670 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 19:46:34] 2025-11-24 00:45:36,769 | INFO     | time since job start (61071s) is within the limit (172800.0s)
[2025-11-23 19:46:34] 2025-11-24 00:45:37,069 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-23 19:46:34] 2025-11-24 00:45:37,074 | INFO     | found 16 cores (8 cores per socket, 2 sockets) HT, CPU MHz: 2999.8772187500012
[2025-11-23 19:46:34] 2025-11-24 00:45:37,077 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895338660/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 19:46:34] 2025-11-24 00:45:37,078 | INFO     | extracted standard info from prmon json
[2025-11-23 19:46:34] 2025-11-24 00:45:37,078 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 19:46:34] 2025-11-24 00:45:37,078 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 19:46:34] 2025-11-24 00:45:37,090 | INFO     | fitting pss+swap vs Time
[2025-11-23 19:46:34] 2025-11-24 00:45:37,091 | INFO     | sum of square deviations: 311014158348.19385
[2025-11-23 19:46:34] 2025-11-24 00:45:37,106 | INFO     | sum of deviations: 1775440508349.644
[2025-11-23 19:46:34] 2025-11-24 00:45:37,106 | INFO     | mean x: 1763914590.6613386
[2025-11-23 19:46:34] 2025-11-24 00:45:37,106 | INFO     | mean y: 2861933.6213786216
[2025-11-23 19:46:34] 2025-11-24 00:45:37,107 | INFO     | intersect: -10066536302.657688
[2025-11-23 19:46:34] 2025-11-24 00:45:37,107 | INFO     | chi2: 4.628701031039156
[2025-11-23 19:46:34] 2025-11-24 00:45:37,108 | INFO     | sum of square deviations: 306377045400.9957
[2025-11-23 19:46:34] 2025-11-24 00:45:37,123 | INFO     | sum of deviations: 2038425369079.2659
[2025-11-23 19:46:34] 2025-11-24 00:45:37,124 | INFO     | mean x: 1763914438.1646585
[2025-11-23 19:46:34] 2025-11-24 00:45:37,124 | INFO     | mean y: 2870576.6325301207
[2025-11-23 19:46:34] 2025-11-24 00:45:37,124 | INFO     | intersect: -11733021500.184116
[2025-11-23 19:46:34] 2025-11-24 00:45:37,125 | INFO     | chi2: 2.503268247845285
[2025-11-23 19:46:34] 2025-11-24 00:45:37,125 | INFO     | current chi2=2.503268247845285 (change=45.918558337234096 %)
[2025-11-23 19:46:34] 2025-11-24 00:45:37,126 | INFO     | sum of square deviations: 301786258903.77545
[2025-11-23 19:46:34] 2025-11-24 00:45:37,141 | INFO     | sum of deviations: 2144002390327.4702
[2025-11-23 19:46:34] 2025-11-24 00:45:37,141 | INFO     | mean x: 1763914285.6680121
[2025-11-23 19:46:34] 2025-11-24 00:45:37,141 | INFO     | mean y: 2874082.6458123107
[2025-11-23 19:46:34] 2025-11-24 00:45:37,141 | INFO     | intersect: -12528632350.226032
[2025-11-23 19:46:34] 2025-11-24 00:45:37,142 | INFO     | chi2: 2.0685350484744647
[2025-11-23 19:46:34] 2025-11-24 00:45:37,142 | INFO     | current chi2=2.0685350484744647 (change=17.366624601459378 %)
[2025-11-23 19:46:34] 2025-11-24 00:45:37,142 | INFO     | right removable region: 990
[2025-11-23 19:46:34] 2025-11-24 00:45:37,143 | INFO     | sum of square deviations: 306376641580.9956
[2025-11-23 19:46:34] 2025-11-24 00:45:37,158 | INFO     | sum of deviations: 1544566137992.964
[2025-11-23 19:46:34] 2025-11-24 00:45:37,158 | INFO     | mean x: 1763914743.1646585
[2025-11-23 19:46:34] 2025-11-24 00:45:37,159 | INFO     | mean y: 2869513.981927711
[2025-11-23 19:46:34] 2025-11-24 00:45:37,159 | INFO     | intersect: -8889724152.883589
[2025-11-23 19:46:34] 2025-11-24 00:45:37,159 | INFO     | chi2: 2.8801767935582285
[2025-11-23 19:46:34] 2025-11-24 00:45:37,160 | INFO     | current chi2=2.8801767935582285 (change=37.775700477427 %)
[2025-11-23 19:46:34] 2025-11-24 00:45:37,160 | INFO     | sum of square deviations: 301785633532.7753
[2025-11-23 19:46:34] 2025-11-24 00:45:37,175 | INFO     | sum of deviations: 1468807854731.9905
[2025-11-23 19:46:34] 2025-11-24 00:45:37,175 | INFO     | mean x: 1763914895.664985
[2025-11-23 19:46:34] 2025-11-24 00:45:37,176 | INFO     | mean y: 2872029.9939455097
[2025-11-23 19:46:34] 2025-11-24 00:45:37,176 | INFO     | intersect: -8582202161.584862
[2025-11-23 19:46:34] 2025-11-24 00:45:37,176 | INFO     | chi2: 2.8040473594924693
[2025-11-23 19:46:34] 2025-11-24 00:45:37,177 | INFO     | current chi2=2.8040473594924693 (change=2.6432208688032444 %)
[2025-11-23 19:46:34] 2025-11-24 00:45:37,177 | INFO     | left removable region: 20
[2025-11-23 19:46:34] 2025-11-24 00:45:37,177 | INFO     | sum of square deviations: 283004578282.245
[2025-11-23 19:46:34] 2025-11-24 00:45:37,192 | INFO     | sum of deviations: 1724698318807.2725
[2025-11-23 19:46:34] 2025-11-24 00:45:37,192 | INFO     | mean x: 1763914865.172165
[2025-11-23 19:46:34] 2025-11-24 00:45:37,192 | INFO     | mean y: 2887999.4175257734
[2025-11-23 19:46:34] 2025-11-24 00:45:37,192 | INFO     | intersect: -10746835630.30953
[2025-11-23 19:46:34] 2025-11-24 00:45:37,193 | INFO     | chi2: 0.19623199412809628
[2025-11-23 19:46:34] 2025-11-24 00:45:37,193 | INFO     | current memory leak: 6.09 B/s (using 970 data points, chi2=0.20)
[2025-11-23 19:46:34] 2025-11-24 00:45:37,194 | INFO     | could have reported an average CPU frequency of 2999 MHz (37 samples)
[2025-11-23 19:46:34] 2025-11-24 00:45:37,194 | INFO     | ..............................
[2025-11-23 19:46:34] 2025-11-24 00:45:37,194 | INFO     | . Timing measurements:
[2025-11-23 19:46:34] 2025-11-24 00:45:37,194 | INFO     | . get job = 0 s
[2025-11-23 19:46:34] 2025-11-24 00:45:37,194 | INFO     | . initial setup = 2 s
[2025-11-23 19:46:34] 2025-11-24 00:45:37,194 | INFO     | . payload setup = 4 s
[2025-11-23 19:46:34] 2025-11-24 00:45:37,194 | INFO     | . stage-in = 0 s
[2025-11-23 19:46:34] 2025-11-24 00:45:37,194 | INFO     | . payload execution = 61040 s
[2025-11-23 19:46:34] 2025-11-24 00:45:37,194 | INFO     | . stage-out = 3 s
[2025-11-23 19:46:34] 2025-11-24 00:45:37,194 | INFO     | . log creation = 0 s
[2025-11-23 19:46:34] 2025-11-24 00:45:37,194 | INFO     | ..............................
[2025-11-23 19:46:34] 2025-11-24 00:45:37,466 | INFO     | 
[2025-11-23 19:46:34] 2025-11-24 00:45:37,469 | INFO     | job summary report
[2025-11-23 19:46:34] 2025-11-24 00:45:37,469 | INFO     | --------------------------------------------------
[2025-11-23 19:46:34] 2025-11-24 00:45:37,470 | INFO     | PanDA job id: 6895338660
[2025-11-23 19:46:34] 2025-11-24 00:45:37,470 | INFO     | task id: 47556137
[2025-11-23 19:46:34] 2025-11-24 00:45:37,470 | INFO     | errors: (none)
[2025-11-23 19:46:34] 2025-11-24 00:45:37,470 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 19:46:34] 2025-11-24 00:45:37,470 | INFO     | pilot state: finished 
[2025-11-23 19:46:34] 2025-11-24 00:45:37,470 | INFO     | transexitcode: 0
[2025-11-23 19:46:34] 2025-11-24 00:45:37,470 | INFO     | exeerrorcode: 0
[2025-11-23 19:46:34] 2025-11-24 00:45:37,470 | INFO     | exeerrordiag: 
[2025-11-23 19:46:34] 2025-11-24 00:45:37,471 | INFO     | exitcode: 0
[2025-11-23 19:46:34] 2025-11-24 00:45:37,471 | INFO     | exitmsg: OK
[2025-11-23 19:46:34] 2025-11-24 00:45:37,471 | INFO     | cpuconsumptiontime: 470014 s
[2025-11-23 19:46:34] 2025-11-24 00:45:37,471 | INFO     | nevents: 1000
[2025-11-23 19:46:34] 2025-11-24 00:45:37,471 | INFO     | neventsw: 0
[2025-11-23 19:46:34] 2025-11-24 00:45:37,471 | INFO     | pid: 48304
[2025-11-23 19:46:34] 2025-11-24 00:45:37,471 | INFO     | pgrp: 48304
[2025-11-23 19:46:34] 2025-11-24 00:45:37,471 | INFO     | corecount: 8
[2025-11-23 19:46:34] 2025-11-24 00:45:37,472 | INFO     | event service: False
[2025-11-23 19:46:34] 2025-11-24 00:45:37,472 | INFO     | sizes: {0: 2298584, 1: 2298783, 4: 2299045, 11: 2299073, 61048: 2351842, 61052: 2360836, 61054: 2361020, 61057: 2361266}
[2025-11-23 19:46:34] 2025-11-24 00:45:37,472 | INFO     | --------------------------------------------------
[2025-11-23 19:46:34] 2025-11-24 00:45:37,472 | INFO     | 
[2025-11-23 19:46:34] 2025-11-24 00:45:37,472 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-23 19:46:34] 2025-11-24 00:45:37,489 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 19:46:34] 2025-11-24 00:45:37,489 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 19:46:34] 2025-11-24 00:45:37,489 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 19:46:34] 2025-11-24 00:45:37,489 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 19:46:34] 2025-11-24 00:45:37,490 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 19:46:34] 2025-11-24 00:45:37,490 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 19:46:34] 2025-11-24 00:45:37,490 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 19:46:34] 2025-11-24 00:45:37,490 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 19:46:34] 2025-11-24 00:45:37,490 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 19:46:34] 2025-11-24 00:45:37,490 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 19:46:34] 2025-11-24 00:45:37,490 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 19:46:34] 2025-11-24 00:45:37,491 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 19:46:34] 2025-11-24 00:45:37,491 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 19:46:34] 2025-11-24 00:45:37,491 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 19:46:34] 2025-11-24 00:45:37,491 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 19:46:34] 2025-11-24 00:45:37,491 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 19:46:34] 2025-11-24 00:45:37,491 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 19:46:34] 2025-11-24 00:45:37,491 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 19:46:34] 2025-11-24 00:45:37,491 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 19:46:34] 2025-11-24 00:45:37,492 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 19:46:34] 2025-11-24 00:45:37,492 | INFO     | job 6895338660 has completed (purged errors)
[2025-11-23 19:46:34] 2025-11-24 00:45:37,492 | INFO     | overall cleanup function is called
[2025-11-23 19:46:34] 2025-11-24 00:45:38,507 | INFO     | --- collectZombieJob: --- 10, [48304]
[2025-11-23 19:46:34] 2025-11-24 00:45:38,507 | INFO     | zombie collector waiting for pid 48304
[2025-11-23 19:46:34] 2025-11-24 00:45:38,508 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 19:46:34] 2025-11-24 00:45:38,508 | INFO     | collected zombie processes
[2025-11-23 19:46:34] 2025-11-24 00:45:38,508 | INFO     | will attempt to kill all subprocesses of pid=48304
[2025-11-23 19:46:34] 2025-11-24 00:45:38,713 | INFO     | process IDs to be killed: [48304] (in reverse order)
[2025-11-23 19:46:34] 2025-11-24 00:45:38,771 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 19:46:34] 2025-11-24 00:45:38,772 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 19:46:34] 2025-11-24 00:45:38,778 | INFO     | did not find any defunct processes belonging to 48304
[2025-11-23 19:46:34] 2025-11-24 00:45:38,783 | INFO     | did not find any defunct processes belonging to 48304
[2025-11-23 19:46:34] 2025-11-24 00:45:38,784 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 19:46:34] 2025-11-24 00:45:38,784 | INFO     | ready for new job
[2025-11-23 19:46:34] 2025-11-24 00:45:38,784 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 19:46:34] 2025-11-24 00:45:38,788 | INFO     | ***************************************
[2025-11-23 19:46:34] 2025-11-24 00:45:38,789 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 19:46:34] 2025-11-24 00:45:38,789 | INFO     | ***************************************
[2025-11-23 19:46:34] 2025-11-24 00:45:38,789 | INFO     | 
[2025-11-23 19:46:34] 2025-11-24 00:45:38,790 | INFO     | architecture information:
[2025-11-23 19:46:34] 2025-11-24 00:45:38,790 | INFO     | executing command: cat /etc/os-release
[2025-11-23 19:46:34] 2025-11-24 00:45:38,799 | INFO     | cat /etc/os-release:
[2025-11-23 19:46:34] NAME="CentOS Linux"
[2025-11-23 19:46:34] VERSION="7 (Core)"
[2025-11-23 19:46:34] ID="centos"
[2025-11-23 19:46:34] ID_LIKE="rhel fedora"
[2025-11-23 19:46:34] VERSION_ID="7"
[2025-11-23 19:46:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 19:46:34] ANSI_COLOR="0;31"
[2025-11-23 19:46:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 19:46:34] HOME_URL="https://www.centos.org/"
[2025-11-23 19:46:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 19:46:34] 
[2025-11-23 19:46:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 19:46:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 19:46:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 19:46:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 19:46:34] 
[2025-11-23 19:46:34] 2025-11-24 00:45:38,799 | INFO     | ***************************************
[2025-11-23 19:46:34] 2025-11-24 00:45:39,302 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-23 19:46:34] 2025-11-24 00:45:39,313 | INFO     | sufficient remaining disk space (100655955968 B)
[2025-11-23 19:46:34] 2025-11-24 00:45:39,313 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 19:46:34] 2025-11-24 00:45:39,313 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 19:46:34] 2025-11-24 00:45:39,313 | INFO     | update_server=False
[2025-11-23 19:46:34] 2025-11-24 00:45:39,313 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 19:46:34] 2025-11-24 00:45:39,377 | INFO     | all data control threads have been joined
[2025-11-23 19:46:34] 2025-11-24 00:45:39,967 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 19:46:34] 2025-11-24 00:45:40,015 | INFO     | all job control threads have been joined
[2025-11-23 19:46:34] 2025-11-24 00:45:40,033 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 19:46:34] 2025-11-24 00:45:40,178 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 19:46:34] 2025-11-24 00:45:40,178 | INFO     | aborting loop
[2025-11-23 19:46:34] 2025-11-24 00:45:40,316 | INFO     | [job] retrieve thread has finished
[2025-11-23 19:46:34] 2025-11-24 00:45:40,383 | INFO     | [data] control thread has finished
[2025-11-23 19:46:34] 2025-11-24 00:45:40,577 | INFO     | all payload control threads have been joined
[2025-11-23 19:46:34] 2025-11-24 00:45:40,815 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 19:46:34] 2025-11-24 00:45:40,816 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 19:46:34] 2025-11-24 00:45:40,831 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 19:46:34] 2025-11-24 00:45:40,843 | INFO     | [job] validate thread has finished
[2025-11-23 19:46:34] 2025-11-24 00:45:40,859 | INFO     | [payload] validate_post thread has finished
[2025-11-23 19:46:34] 2025-11-24 00:45:40,904 | INFO     | [data] copytool_in thread has finished
[2025-11-23 19:46:34] 2025-11-24 00:45:41,018 | INFO     | [job] control thread has finished
[2025-11-23 19:46:34] 2025-11-24 00:45:41,183 | INFO     | [job] job monitor thread has finished
[2025-11-23 19:46:34] 2025-11-24 00:45:41,387 | INFO     | [payload] failed_post thread has finished
[2025-11-23 19:46:34] 2025-11-24 00:45:41,548 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 19:46:34] 2025-11-24 00:45:41,583 | INFO     | [payload] control thread has finished
[2025-11-23 19:46:34] 2025-11-24 00:45:42,039 | INFO     | [data] copytool_out thread has finished
[2025-11-23 19:46:34] 2025-11-24 00:45:42,266 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 19:46:34] 2025-11-24 00:45:43,268 | INFO     | [job] queue monitor thread has finished
[2025-11-23 19:46:34] 2025-11-24 00:45:43,972 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 19:46:34] 2025-11-24 00:46:10,194 | INFO     | PID=29409 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 19:46:34] 2025-11-24 00:46:10,194 | INFO     | .. there are 4 such processes running
[2025-11-23 19:46:34] 2025-11-24 00:46:10,195 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 19:46:34] 2025-11-24 00:46:10,195 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 19:46:34] 2025-11-24 00:46:10,195 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 19:46:34] 2025-11-24 00:46:27,183 | INFO     | [monitor] cgroup control has ended
[2025-11-23 19:46:34] 2025-11-24 00:46:28,907 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139754352355136)>', '<ExcThread(monitor, started 139753454294784)>']
[2025-11-23 19:46:34] 2025-11-24 00:46:29,290 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 19:46:34] 2025-11-24 00:46:29,291 | INFO     | [monitor] control thread has ended
[2025-11-23 19:46:34] 2025-11-24 00:46:33,932 | INFO     | all workflow threads have been joined
[2025-11-23 19:46:34] 2025-11-24 00:46:33,933 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 19:46:34] 2025-11-24 00:46:33,933 | INFO     | traces error code: 0
[2025-11-23 19:46:34] 2025-11-24 00:46:33,934 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 19:46:34] 2025-11-24 00:46:34,058 [wrapper] ==== pilot stdout END ====
[2025-11-23 19:46:34] 2025-11-24 00:46:34,060 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 19:46:34] 2025-11-24 00:46:34,062 [wrapper] pilotpid: 29409
[2025-11-23 19:46:34] 2025-11-24 00:46:34,064 [wrapper] Pilot exit status: 0
[2025-11-23 19:46:34] 2025-11-24 00:46:34,070 [wrapper] pandaids: 6895338660
[2025-11-23 19:46:34] 2025-11-24 00:46:34,112 [wrapper] cleanup supervisor_pilot 32642 29410
[2025-11-23 19:46:34] 2025-11-24 00:46:34,115 [wrapper] Test setup, not cleaning
[2025-11-23 19:46:34] 2025-11-24 00:46:34,117 [wrapper] apfmon messages muted
[2025-11-23 19:46:34] 2025-11-24 00:46:34,119 [wrapper] ==== wrapper stdout END ====
[2025-11-23 19:46:34] 2025-11-24 00:46:34,121 [wrapper] ==== wrapper stderr END ====
[2025-11-23 19:46:34]  *** Error codes and diagnostics ***
[2025-11-23 19:46:34]     "exeErrorCode": 0,
[2025-11-23 19:46:34]     "exeErrorDiag": "",
[2025-11-23 19:46:34]     "pilotErrorCode": 0,
[2025-11-23 19:46:34]     "pilotErrorDiag": "",
[2025-11-23 19:46:34]  *** Listing of results directory ***
[2025-11-23 19:46:34] total 1309548
[2025-11-23 19:46:34] -rw-r--r-- 1 boincer umatlas    576529 Nov 22 04:42 pilot3.tar.gz
[2025-11-23 19:46:34] -rw-r--r-- 1 boincer umatlas      5112 Nov 22 04:48 queuedata.json
[2025-11-23 19:46:34] -rwx------ 1 boincer umatlas     36292 Nov 22 04:48 runpilot2-wrapper.sh
[2025-11-23 19:46:34] -rw-r--r-- 1 boincer umatlas       100 Nov 23 02:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 19:46:34] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 02:47 run_atlas
[2025-11-23 19:46:34] -rw-r--r-- 1 boincer umatlas       105 Nov 23 02:47 job.xml
[2025-11-23 19:46:34] -rw-r--r-- 2 boincer umatlas 408632044 Nov 23 02:47 EVNT.47483658._000335.pool.root.1
[2025-11-23 19:46:34] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 02:47 start_atlas.sh
[2025-11-23 19:46:34] drwxrwx--x 2 boincer umatlas      4096 Nov 23 02:47 shared
[2025-11-23 19:46:34] -rw-r--r-- 2 boincer umatlas    590101 Nov 23 02:47 input.tar.gz
[2025-11-23 19:46:34] -rw-r--r-- 1 boincer umatlas         0 Nov 23 02:47 boinc_lockfile
[2025-11-23 19:46:34] -rw-r--r-- 1 boincer umatlas      2784 Nov 23 02:47 pandaJob.out
[2025-11-23 19:46:34] -rw------- 1 boincer umatlas        57 Nov 23 02:47 setup.sh.local
[2025-11-23 19:46:34] -rw------- 1 boincer umatlas    989784 Nov 23 02:47 agis_schedconf.cvmfs.json
[2025-11-23 19:46:34] drwx------ 5 boincer umatlas      4096 Nov 23 02:47 pilot3
[2025-11-23 19:46:34] -rw-r--r-- 1 boincer umatlas       533 Nov 23 19:35 boinc_task_state.xml
[2025-11-23 19:46:34] -rw------- 1 boincer umatlas 907363444 Nov 23 19:44 HITS.47556137._003320.pool.root.1
[2025-11-23 19:46:34] -rw------- 1 boincer umatlas      1060 Nov 23 19:45 memory_monitor_summary.json
[2025-11-23 19:46:34] -rw------- 1 boincer umatlas   1526164 Nov 23 19:45 agis_ddmendpoints.agis.ALL.json
[2025-11-23 19:46:34] -rw------- 1 boincer umatlas   2199804 Nov 23 19:45 log.47556137._003320.job.log.tgz.1
[2025-11-23 19:46:34] -rw------- 1 boincer umatlas      8633 Nov 23 19:45 heartbeat.json
[2025-11-23 19:46:34] -rw------- 1 boincer umatlas        95 Nov 23 19:46 pilot_heartbeat.json
[2025-11-23 19:46:34] -rw-r--r-- 1 boincer umatlas      6037 Nov 23 19:46 init_data.xml
[2025-11-23 19:46:34] -rw-r--r-- 1 boincer umatlas      8192 Nov 23 19:46 boinc_mmap_file
[2025-11-23 19:46:34] -rw-r--r-- 1 boincer umatlas        29 Nov 23 19:46 wrapper_checkpoint.txt
[2025-11-23 19:46:34] -rw------- 1 boincer umatlas      4822 Nov 23 19:46 pilotlog.txt
[2025-11-23 19:46:34] -rw------- 1 boincer umatlas   8328755 Nov 23 19:46 log.47556137._003320.job.log.1
[2025-11-23 19:46:34] -rw------- 1 boincer umatlas       353 Nov 23 19:46 output.list
[2025-11-23 19:46:34] -rw-r--r-- 1 boincer umatlas       620 Nov 23 19:46 runtime_log
[2025-11-23 19:46:34] -rw------- 1 boincer umatlas  10547200 Nov 23 19:46 result.tar.gz
[2025-11-23 19:46:34] -rw-r--r-- 1 boincer umatlas      9333 Nov 23 19:46 runtime_log.err
[2025-11-23 19:46:34] -rw------- 1 boincer umatlas       665 Nov 23 19:46 NQmKDmdPzg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm25JKDmopGoNm.diag
[2025-11-23 19:46:34] -rw-r--r-- 1 boincer umatlas     21038 Nov 23 19:46 stderr.txt
[2025-11-23 19:46:34] HITS file was successfully produced:
[2025-11-23 19:46:34] -rw------- 1 boincer umatlas 907363444 Nov 23 19:44 shared/HITS.pool.root.1
[2025-11-23 19:46:34]  *** Contents of shared directory: ***
[2025-11-23 19:46:34] total 1296056
[2025-11-23 19:46:34] -rw-r--r-- 2 boincer umatlas 408632044 Nov 23 02:47 ATLAS.root_0
[2025-11-23 19:46:34] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 02:47 start_atlas.sh
[2025-11-23 19:46:34] -rw-r--r-- 2 boincer umatlas    590101 Nov 23 02:47 input.tar.gz
[2025-11-23 19:46:34] -rw------- 1 boincer umatlas 907363444 Nov 23 19:44 HITS.pool.root.1
[2025-11-23 19:46:34] -rw------- 1 boincer umatlas  10547200 Nov 23 19:46 result.tar.gz
19:46:35 (22785): run_atlas exited; CPU time 470344.080838
19:46:35 (22785): called boinc_finish(0)

</stderr_txt>
]]>

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