Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:37:48 (17468): wrapper (7.7.26015): starting
23:37:48 (17468): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 23:37:48] Arguments: --nthreads 8
[2025-11-25 23:37:48] Threads: 8
[2025-11-25 23:37:48] Checking for CVMFS
[2025-11-25 23:37:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 23:37:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 23:37:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 23:37:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 23:37:50] 2.11.2.0 32703 284366 143404 153300 0 278 17393865 25165825 3650 130560 11 138746227 99.876 77764624 2916 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 23:37:50] CVMFS is ok
[2025-11-25 23:37:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 23:37:50] Checking for apptainer binary...
[2025-11-25 23:37:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 23:37:50] Running /usr/bin/apptainer --version
[2025-11-25 23:37:50] apptainer version 1.3.2-1.el7
[2025-11-25 23:37:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 23:37:54] cg-vwn328.simple-grid.lan
[2025-11-25 23:37:54] apptainer works
[2025-11-25 23:37:54] Set ATHENA_PROC_NUMBER=8
[2025-11-25 23:37:54] Set ATHENA_CORE_NUMBER=8
[2025-11-25 23:37:54] Starting ATLAS job with PandaID=6895338563
[2025-11-25 23:37:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 23:27:03]  *** The last 200 lines of the pilot log: ***
[2025-11-26 23:27:03] 2025-11-26 22:26:08,565 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:27:03] 2025-11-26 22:26:09,529 | INFO     | time since job start (85666s) is within the limit (172800.0s)
[2025-11-26 23:27:03] 2025-11-26 22:26:11,081 | INFO     | monitor loop #5704: job 0:6895338563 is in state 'finished'
[2025-11-26 23:27:03] 2025-11-26 22:26:11,081 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:27:03] 2025-11-26 22:26:11,535 | INFO     | time since job start (85668s) is within the limit (172800.0s)
[2025-11-26 23:27:03] 2025-11-26 22:26:13,545 | INFO     | time since job start (85670s) is within the limit (172800.0s)
[2025-11-26 23:27:03] 2025-11-26 22:26:13,591 | INFO     | monitor loop #5705: job 0:6895338563 is in state 'finished'
[2025-11-26 23:27:03] 2025-11-26 22:26:13,591 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:27:03] 2025-11-26 22:26:15,552 | INFO     | time since job start (85672s) is within the limit (172800.0s)
[2025-11-26 23:27:03] 2025-11-26 22:26:16,099 | INFO     | monitor loop #5706: job 0:6895338563 is in state 'finished'
[2025-11-26 23:27:03] 2025-11-26 22:26:16,099 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:27:03] 2025-11-26 22:26:17,559 | INFO     | time since job start (85674s) is within the limit (172800.0s)
[2025-11-26 23:27:03] 2025-11-26 22:26:18,606 | INFO     | monitor loop #5707: job 0:6895338563 is in state 'finished'
[2025-11-26 23:27:03] 2025-11-26 22:26:18,606 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:27:03] 2025-11-26 22:26:19,539 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 23:27:03] 2025-11-26 22:26:19,540 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 23:27:03] 2025-11-26 22:26:19,542 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6895338563/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 23:27:03] 2025-11-26 22:26:19,543 | INFO     | extracted standard info from prmon json
[2025-11-26 23:27:03] 2025-11-26 22:26:19,543 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 23:27:03] 2025-11-26 22:26:19,543 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 23:27:03] 2025-11-26 22:26:19,567 | INFO     | fitting pss+swap vs Time
[2025-11-26 23:27:03] 2025-11-26 22:26:19,570 | INFO     | sum of square deviations: 854516246534.0116
[2025-11-26 23:27:03] 2025-11-26 22:26:19,582 | INFO     | time since job start (85676s) is within the limit (172800.0s)
[2025-11-26 23:27:03] 2025-11-26 22:26:19,641 | INFO     | sum of deviations: 2983020169130.588
[2025-11-26 23:27:03] 2025-11-26 22:26:19,641 | INFO     | mean x: 1764153115.614836
[2025-11-26 23:27:03] 2025-11-26 22:26:19,641 | INFO     | mean y: 2836765.1640513553
[2025-11-26 23:27:03] 2025-11-26 22:26:19,641 | INFO     | intersect: -6155623470.856941
[2025-11-26 23:27:03] 2025-11-26 22:26:19,643 | INFO     | chi2: 20.821904606125884
[2025-11-26 23:27:03] 2025-11-26 22:26:19,645 | INFO     | sum of square deviations: 845406775690.2742
[2025-11-26 23:27:03] 2025-11-26 22:26:19,737 | INFO     | sum of deviations: 3442167704648.2925
[2025-11-26 23:27:03] 2025-11-26 22:26:19,738 | INFO     | mean x: 1764152963.1188262
[2025-11-26 23:27:03] 2025-11-26 22:26:19,738 | INFO     | mean y: 2844450.5404438083
[2025-11-26 23:27:03] 2025-11-26 22:26:19,738 | INFO     | intersect: -7180100529.701775
[2025-11-26 23:27:03] 2025-11-26 22:26:19,739 | INFO     | chi2: 17.648076111487462
[2025-11-26 23:27:03] 2025-11-26 22:26:19,740 | INFO     | current chi2=17.648076111487462 (change=15.242738619139907 %)
[2025-11-26 23:27:03] 2025-11-26 22:26:19,740 | INFO     | right removable region: 1396
[2025-11-26 23:27:03] 2025-11-26 22:26:19,742 | INFO     | sum of square deviations: 845405822260.2751
[2025-11-26 23:27:03] 2025-11-26 22:26:19,826 | INFO     | sum of deviations: 2384500876784.5825
[2025-11-26 23:27:03] 2025-11-26 22:26:19,827 | INFO     | mean x: 1764153268.1188262
[2025-11-26 23:27:03] 2025-11-26 22:26:19,827 | INFO     | mean y: 2846783.7916964926
[2025-11-26 23:27:03] 2025-11-26 22:26:19,827 | INFO     | intersect: -4973017947.497833
[2025-11-26 23:27:03] 2025-11-26 22:26:19,829 | INFO     | chi2: 15.977524292671495
[2025-11-26 23:27:03] 2025-11-26 22:26:19,829 | INFO     | current chi2=15.977524292671495 (change=23.265788625451457 %)
[2025-11-26 23:27:03] 2025-11-26 22:26:19,829 | INFO     | left removable region: 10
[2025-11-26 23:27:03] 2025-11-26 22:26:19,831 | INFO     | sum of square deviations: 825592427953.8944
[2025-11-26 23:27:03] 2025-11-26 22:26:19,916 | INFO     | sum of deviations: 2478583443859.991
[2025-11-26 23:27:03] 2025-11-26 22:26:19,916 | INFO     | mean x: 1764153237.6277056
[2025-11-26 23:27:03] 2025-11-26 22:26:19,916 | INFO     | mean y: 2864236.5367965368
[2025-11-26 23:27:03] 2025-11-26 22:26:19,916 | INFO     | intersect: -5293454938.837499
[2025-11-26 23:27:03] 2025-11-26 22:26:19,918 | INFO     | chi2: 9.014127198289922
[2025-11-26 23:27:03] 2025-11-26 22:26:19,918 | INFO     | current memory leak: 3.00 B/s (using 1386 data points, chi2=9.01)
[2025-11-26 23:27:03] 2025-11-26 22:26:19,923 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-26 23:27:03] 2025-11-26 22:26:19,923 | INFO     | ..............................
[2025-11-26 23:27:03] 2025-11-26 22:26:19,923 | INFO     | . Timing measurements:
[2025-11-26 23:27:03] 2025-11-26 22:26:19,923 | INFO     | . get job = 0 s
[2025-11-26 23:27:03] 2025-11-26 22:26:19,924 | INFO     | . initial setup = 2 s
[2025-11-26 23:27:03] 2025-11-26 22:26:19,924 | INFO     | . payload setup = 14 s
[2025-11-26 23:27:03] 2025-11-26 22:26:19,924 | INFO     | . stage-in = 0 s
[2025-11-26 23:27:03] 2025-11-26 22:26:19,924 | INFO     | . payload execution = 85525 s
[2025-11-26 23:27:03] 2025-11-26 22:26:19,924 | INFO     | . stage-out = 6 s
[2025-11-26 23:27:03] 2025-11-26 22:26:19,924 | INFO     | . log creation = 2 s
[2025-11-26 23:27:03] 2025-11-26 22:26:19,924 | INFO     | ..............................
[2025-11-26 23:27:03] 2025-11-26 22:26:20,051 | INFO     | 
[2025-11-26 23:27:03] 2025-11-26 22:26:20,051 | INFO     | job summary report
[2025-11-26 23:27:03] 2025-11-26 22:26:20,051 | INFO     | --------------------------------------------------
[2025-11-26 23:27:03] 2025-11-26 22:26:20,051 | INFO     | PanDA job id: 6895338563
[2025-11-26 23:27:03] 2025-11-26 22:26:20,051 | INFO     | task id: 47556137
[2025-11-26 23:27:03] 2025-11-26 22:26:20,051 | INFO     | errors: (none)
[2025-11-26 23:27:03] 2025-11-26 22:26:20,052 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 23:27:03] 2025-11-26 22:26:20,052 | INFO     | pilot state: finished 
[2025-11-26 23:27:03] 2025-11-26 22:26:20,052 | INFO     | transexitcode: 0
[2025-11-26 23:27:03] 2025-11-26 22:26:20,052 | INFO     | exeerrorcode: 0
[2025-11-26 23:27:03] 2025-11-26 22:26:20,052 | INFO     | exeerrordiag: 
[2025-11-26 23:27:03] 2025-11-26 22:26:20,052 | INFO     | exitcode: 0
[2025-11-26 23:27:03] 2025-11-26 22:26:20,052 | INFO     | exitmsg: OK
[2025-11-26 23:27:03] 2025-11-26 22:26:20,052 | INFO     | cpuconsumptiontime: 323193 s
[2025-11-26 23:27:03] 2025-11-26 22:26:20,052 | INFO     | nevents: 1000
[2025-11-26 23:27:03] 2025-11-26 22:26:20,052 | INFO     | neventsw: 0
[2025-11-26 23:27:03] 2025-11-26 22:26:20,052 | INFO     | pid: 2677
[2025-11-26 23:27:03] 2025-11-26 22:26:20,052 | INFO     | pgrp: 2677
[2025-11-26 23:27:03] 2025-11-26 22:26:20,053 | INFO     | corecount: 8
[2025-11-26 23:27:03] 2025-11-26 22:26:20,053 | INFO     | event service: False
[2025-11-26 23:27:03] 2025-11-26 22:26:20,053 | INFO     | sizes: {0: 2284037, 1: 2284292, 2: 2284292, 10: 2284582, 12: 2284610, 85544: 2345674, 85545: 2345801, 85553: 2354851, 85555: 2354907, 85654: 2355153}
[2025-11-26 23:27:03] 2025-11-26 22:26:20,053 | INFO     | --------------------------------------------------
[2025-11-26 23:27:03] 2025-11-26 22:26:20,053 | INFO     | 
[2025-11-26 23:27:03] 2025-11-26 22:26:20,053 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-26 23:27:03] 2025-11-26 22:26:20,074 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 23:27:03] 2025-11-26 22:26:20,074 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 23:27:03] 2025-11-26 22:26:20,074 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 23:27:03] 2025-11-26 22:26:20,074 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 23:27:03] 2025-11-26 22:26:20,074 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 23:27:03] 2025-11-26 22:26:20,075 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 23:27:03] 2025-11-26 22:26:20,075 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 23:27:03] 2025-11-26 22:26:20,075 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 23:27:03] 2025-11-26 22:26:20,075 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 23:27:03] 2025-11-26 22:26:20,075 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 23:27:03] 2025-11-26 22:26:20,075 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 23:27:03] 2025-11-26 22:26:20,075 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 23:27:03] 2025-11-26 22:26:20,075 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 23:27:03] 2025-11-26 22:26:20,075 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 23:27:03] 2025-11-26 22:26:20,075 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 23:27:03] 2025-11-26 22:26:20,075 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 23:27:03] 2025-11-26 22:26:20,076 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 23:27:03] 2025-11-26 22:26:20,076 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 23:27:03] 2025-11-26 22:26:20,076 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 23:27:03] 2025-11-26 22:26:20,076 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 23:27:03] 2025-11-26 22:26:20,076 | INFO     | job 6895338563 has completed (purged errors)
[2025-11-26 23:27:03] 2025-11-26 22:26:20,076 | INFO     | overall cleanup function is called
[2025-11-26 23:27:03] 2025-11-26 22:26:21,094 | INFO     | --- collectZombieJob: --- 10, [2677]
[2025-11-26 23:27:03] 2025-11-26 22:26:21,094 | INFO     | zombie collector waiting for pid 2677
[2025-11-26 23:27:03] 2025-11-26 22:26:21,094 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 23:27:03] 2025-11-26 22:26:21,094 | INFO     | collected zombie processes
[2025-11-26 23:27:03] 2025-11-26 22:26:21,094 | INFO     | will attempt to kill all subprocesses of pid=2677
[2025-11-26 23:27:03] 2025-11-26 22:26:21,188 | INFO     | process IDs to be killed: [2677] (in reverse order)
[2025-11-26 23:27:03] 2025-11-26 22:26:21,929 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 23:27:03] 2025-11-26 22:26:21,929 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 23:27:03] 2025-11-26 22:26:21,932 | INFO     | did not find any defunct processes belonging to 2677
[2025-11-26 23:27:03] 2025-11-26 22:26:21,934 | INFO     | did not find any defunct processes belonging to 2677
[2025-11-26 23:27:03] 2025-11-26 22:26:21,943 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 23:27:03] 2025-11-26 22:26:21,943 | INFO     | ready for new job
[2025-11-26 23:27:03] 2025-11-26 22:26:21,943 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 23:27:03] 2025-11-26 22:26:21,948 | INFO     | ***************************************
[2025-11-26 23:27:03] 2025-11-26 22:26:21,949 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 23:27:03] 2025-11-26 22:26:21,949 | INFO     | ***************************************
[2025-11-26 23:27:03] 2025-11-26 22:26:21,949 | INFO     | 
[2025-11-26 23:27:03] 2025-11-26 22:26:21,949 | INFO     | pilot is running in a VM
[2025-11-26 23:27:03] 2025-11-26 22:26:21,949 | INFO     | architecture information:
[2025-11-26 23:27:03] 2025-11-26 22:26:21,956 | INFO     | executing command: cat /etc/os-release
[2025-11-26 23:27:03] 2025-11-26 22:26:22,159 | INFO     | cat /etc/os-release:
[2025-11-26 23:27:03] NAME="CentOS Linux"
[2025-11-26 23:27:03] VERSION="7 (Core)"
[2025-11-26 23:27:03] ID="centos"
[2025-11-26 23:27:03] ID_LIKE="rhel fedora"
[2025-11-26 23:27:03] VERSION_ID="7"
[2025-11-26 23:27:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 23:27:03] ANSI_COLOR="0;31"
[2025-11-26 23:27:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 23:27:03] HOME_URL="https://www.centos.org/"
[2025-11-26 23:27:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 23:27:03] 
[2025-11-26 23:27:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 23:27:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 23:27:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 23:27:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 23:27:03] 
[2025-11-26 23:27:03] 2025-11-26 22:26:22,160 | INFO     | ***************************************
[2025-11-26 23:27:03] 2025-11-26 22:26:22,663 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-26 23:27:03] 2025-11-26 22:26:22,891 | INFO     | sufficient remaining disk space (495401828352 B)
[2025-11-26 23:27:03] 2025-11-26 22:26:22,892 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 23:27:03] 2025-11-26 22:26:22,892 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 23:27:03] 2025-11-26 22:26:22,892 | INFO     | update_server=False
[2025-11-26 23:27:03] 2025-11-26 22:26:22,892 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 23:27:03] 2025-11-26 22:26:22,893 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 23:27:03] 2025-11-26 22:26:22,895 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:27:03] 2025-11-26 22:26:22,895 | INFO     | aborting loop
[2025-11-26 23:27:03] 2025-11-26 22:26:22,900 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 23:27:03] 2025-11-26 22:26:23,239 | INFO     | all job control threads have been joined
[2025-11-26 23:27:03] 2025-11-26 22:26:23,697 | INFO     | all data control threads have been joined
[2025-11-26 23:27:03] 2025-11-26 22:26:23,898 | INFO     | [job] retrieve thread has finished
[2025-11-26 23:27:03] 2025-11-26 22:26:23,901 | INFO     | [job] job monitor thread has finished
[2025-11-26 23:27:03] 2025-11-26 22:26:23,913 | INFO     | all payload control threads have been joined
[2025-11-26 23:27:03] 2025-11-26 22:26:23,950 | INFO     | [payload] failed_post thread has finished
[2025-11-26 23:27:03] 2025-11-26 22:26:24,206 | INFO     | [data] copytool_in thread has finished
[2025-11-26 23:27:03] 2025-11-26 22:26:24,215 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 23:27:03] 2025-11-26 22:26:24,245 | INFO     | [job] control thread has finished
[2025-11-26 23:27:03] 2025-11-26 22:26:24,282 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 23:27:03] 2025-11-26 22:26:24,369 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 23:27:03] 2025-11-26 22:26:24,680 | INFO     | [payload] validate_post thread has finished
[2025-11-26 23:27:03] 2025-11-26 22:26:24,683 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 23:27:03] 2025-11-26 22:26:24,703 | INFO     | [data] control thread has finished
[2025-11-26 23:27:03] 2025-11-26 22:26:24,834 | INFO     | [job] validate thread has finished
[2025-11-26 23:27:03] 2025-11-26 22:26:24,907 | INFO     | [data] copytool_out thread has finished
[2025-11-26 23:27:03] 2025-11-26 22:26:24,919 | INFO     | [payload] control thread has finished
[2025-11-26 23:27:03] 2025-11-26 22:26:25,066 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:27:03] 2025-11-26 22:26:26,072 | INFO     | [job] queue monitor thread has finished
[2025-11-26 23:27:03] 2025-11-26 22:26:26,903 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 23:27:03] 2025-11-26 22:26:51,554 | INFO     | [monitor] cgroup control has ended
[2025-11-26 23:27:03] 2025-11-26 22:26:51,596 | INFO     | 85681s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-26 23:27:03] 2025-11-26 22:26:52,771 | INFO     | PID=23940 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 23:27:03] 2025-11-26 22:26:52,771 | INFO     | .. there are 9 such processes running
[2025-11-26 23:27:03] 2025-11-26 22:26:52,772 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 23:27:03] 2025-11-26 22:26:52,772 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 23:27:03] 2025-11-26 22:26:52,772 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 23:27:03] 2025-11-26 22:26:53,611 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140602148407104)>', '<ExcThread(monitor, started 140601701943040)>']
[2025-11-26 23:27:03] 2025-11-26 22:26:53,778 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 23:27:03] 2025-11-26 22:26:53,778 | INFO     | [monitor] control thread has ended
[2025-11-26 23:27:03] 2025-11-26 22:26:58,637 | INFO     | all workflow threads have been joined
[2025-11-26 23:27:03] 2025-11-26 22:26:58,637 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 23:27:03] 2025-11-26 22:26:58,637 | INFO     | traces error code: 0
[2025-11-26 23:27:03] 2025-11-26 22:26:58,638 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 23:27:03] 2025-11-26 22:26:58,935 [wrapper] ==== pilot stdout END ====
[2025-11-26 23:27:03] 2025-11-26 22:26:59,036 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 23:27:03] 2025-11-26 22:26:59,090 [wrapper] pilotpid: 23940
[2025-11-26 23:27:03] 2025-11-26 22:26:59,167 [wrapper] Pilot exit status: 0
[2025-11-26 23:27:03] 2025-11-26 22:26:59,559 [wrapper] pandaids: 6895338563
[2025-11-26 23:27:03] 2025-11-26 22:27:00,508 [wrapper] cleanup supervisor_pilot  5127 23941
[2025-11-26 23:27:03] 2025-11-26 22:27:00,617 [wrapper] Test setup, not cleaning
[2025-11-26 23:27:03] 2025-11-26 22:27:00,666 [wrapper] apfmon messages muted
[2025-11-26 23:27:03] 2025-11-26 22:27:00,727 [wrapper] ==== wrapper stdout END ====
[2025-11-26 23:27:03] 2025-11-26 22:27:00,801 [wrapper] ==== wrapper stderr END ====
[2025-11-26 23:27:03]  *** Error codes and diagnostics ***
[2025-11-26 23:27:03]     "exeErrorCode": 0,
[2025-11-26 23:27:03]     "exeErrorDiag": "",
[2025-11-26 23:27:03]     "pilotErrorCode": 0,
[2025-11-26 23:27:03]     "pilotErrorDiag": "",
[2025-11-26 23:27:03]  *** Listing of results directory ***
[2025-11-26 23:27:03] total 1328832
[2025-11-26 23:27:03] -rw-r--r--. 1 boinc boinc    576529 Nov 22 10:26 pilot3.tar.gz
[2025-11-26 23:27:03] -rwx------. 1 boinc boinc     36292 Nov 22 10:32 runpilot2-wrapper.sh
[2025-11-26 23:27:03] -rw-r--r--. 1 boinc boinc      5112 Nov 22 10:32 queuedata.json
[2025-11-26 23:27:03] -rw-r--r--. 1 boinc boinc       100 Nov 25 23:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 23:27:03] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 23:37 run_atlas
[2025-11-26 23:27:03] -rw-r--r--. 1 boinc boinc       105 Nov 25 23:37 job.xml
[2025-11-26 23:27:03] -rw-r--r--. 2 boinc boinc 409379682 Nov 25 23:37 EVNT.47483658._000331.pool.root.1
[2025-11-26 23:27:03] drwxrwx--x. 2 boinc boinc        68 Nov 25 23:37 shared
[2025-11-26 23:27:03] -rw-r--r--. 2 boinc boinc    590099 Nov 25 23:37 input.tar.gz
[2025-11-26 23:27:03] -rw-r--r--. 1 boinc boinc      6392 Nov 25 23:37 init_data.xml
[2025-11-26 23:27:03] -rw-r--r--. 2 boinc boinc     15847 Nov 25 23:37 start_atlas.sh
[2025-11-26 23:27:03] -rw-r--r--. 1 boinc boinc         0 Nov 25 23:37 boinc_lockfile
[2025-11-26 23:27:03] -rw-r--r--. 1 boinc boinc      2785 Nov 25 23:37 pandaJob.out
[2025-11-26 23:27:03] -rw-------. 1 boinc boinc    991877 Nov 25 23:38 agis_schedconf.cvmfs.json
[2025-11-26 23:27:03] drwx------. 5 boinc boinc      4096 Nov 25 23:38 pilot3
[2025-11-26 23:27:03] -rw-r--r--. 1 boinc boinc       533 Nov 26 23:01 boinc_task_state.xml
[2025-11-26 23:27:03] -rw-------. 1 boinc boinc 919677810 Nov 26 23:23 HITS.47556137._003277.pool.root.1
[2025-11-26 23:27:03] -rw-------. 1 boinc boinc      1033 Nov 26 23:24 memory_monitor_summary.json
[2025-11-26 23:27:03] -rw-------. 1 boinc boinc   1516240 Nov 26 23:24 agis_ddmendpoints.agis.ALL.json
[2025-11-26 23:27:03] -rw-------. 1 boinc boinc   2484998 Nov 26 23:24 log.47556137._003277.job.log.tgz.1
[2025-11-26 23:27:03] -rw-------. 1 boinc boinc      8625 Nov 26 23:26 heartbeat.json
[2025-11-26 23:27:03] -rw-r--r--. 1 boinc boinc      8192 Nov 26 23:26 boinc_mmap_file
[2025-11-26 23:27:03] -rw-r--r--. 1 boinc boinc        29 Nov 26 23:26 wrapper_checkpoint.txt
[2025-11-26 23:27:03] -rw-------. 1 boinc boinc        95 Nov 26 23:26 pilot_heartbeat.json
[2025-11-26 23:27:03] -rw-------. 1 boinc boinc      5000 Nov 26 23:26 pilotlog.txt
[2025-11-26 23:27:03] -rw-------. 1 boinc boinc  11395596 Nov 26 23:27 log.47556137._003277.job.log.1
[2025-11-26 23:27:03] -rw-------. 1 boinc boinc       353 Nov 26 23:27 output.list
[2025-11-26 23:27:03] -rw-r--r--. 1 boinc boinc       620 Nov 26 23:27 runtime_log
[2025-11-26 23:27:03] -rw-------. 1 boinc boinc  13895680 Nov 26 23:27 result.tar.gz
[2025-11-26 23:27:03] -rw-r--r--. 1 boinc boinc      8817 Nov 26 23:27 runtime_log.err
[2025-11-26 23:27:03] -rw-------. 1 boinc boinc       662 Nov 26 23:27 8TYLDmQAzg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmV5JKDm2hxNnm.diag
[2025-11-26 23:27:03] -rw-r--r--. 1 boinc boinc     21442 Nov 26 23:27 stderr.txt
[2025-11-26 23:27:03] HITS file was successfully produced:
[2025-11-26 23:27:03] -rw-------. 1 boinc boinc 919677810 Nov 26 23:23 shared/HITS.pool.root.1
[2025-11-26 23:27:03]  *** Contents of shared directory: ***
[2025-11-26 23:27:03] total 1312080
[2025-11-26 23:27:03] -rw-r--r--. 2 boinc boinc 409379682 Nov 25 23:37 ATLAS.root_0
[2025-11-26 23:27:03] -rw-r--r--. 2 boinc boinc    590099 Nov 25 23:37 input.tar.gz
[2025-11-26 23:27:03] -rw-r--r--. 2 boinc boinc     15847 Nov 25 23:37 start_atlas.sh
[2025-11-26 23:27:03] -rw-------. 1 boinc boinc 919677810 Nov 26 23:23 HITS.pool.root.1
[2025-11-26 23:27:03] -rw-------. 1 boinc boinc  13895680 Nov 26 23:27 result.tar.gz
23:27:05 (17468): run_atlas exited; CPU time 323778.870711
23:27:05 (17468): called boinc_finish(0)

</stderr_txt>
]]>

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