Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:28:12 (2661036): wrapper (7.7.26015): starting
09:28:12 (2661036): wrapper: running run_atlas (--nthreads 3)
[2025-11-23 09:28:12] Arguments: --nthreads 3
[2025-11-23 09:28:12] Threads: 3
[2025-11-23 09:28:12] Checking for CVMFS
[2025-11-23 09:28:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 09:28:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 09:28:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 09:28:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 09:28:13] 2.9.2.0 2639879 4 46300 153202 3 88 34813581 36864001 0 130560 0 62605 99.998 1292 12792 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-23 09:28:13] CVMFS is ok
[2025-11-23 09:28:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 09:28:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 09:28:13] Further information can be found at the LHC@home message board.
[2025-11-23 09:28:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 09:28:13] Checking for apptainer binary...
[2025-11-23 09:28:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 09:28:13] Running /usr/bin/apptainer --version
[2025-11-23 09:28:13] apptainer version 1.4.1-1.1
[2025-11-23 09:28:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 09:28:13] thA335
[2025-11-23 09:28:13] apptainer works
[2025-11-23 09:28:13] Set ATHENA_PROC_NUMBER=3
[2025-11-23 09:28:13] Set ATHENA_CORE_NUMBER=3
[2025-11-23 09:28:13] Starting ATLAS job with PandaID=6895338630
[2025-11-23 09:28:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 09:32:30]  *** The last 200 lines of the pilot log: ***
[2025-11-23 09:32:30] 2025-11-23 08:31:38,956 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 09:32:30] 2025-11-23 08:31:38,956 | INFO     | update_server=False
[2025-11-23 09:32:30] 2025-11-23 08:31:38,956 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 09:32:30] 2025-11-23 08:31:38,956 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 09:32:30] 2025-11-23 08:31:39,113 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 09:32:30] 2025-11-23 08:31:39,113 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 09:32:30] 2025-11-23 08:31:39,113 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 09:32:30] 2025-11-23 08:31:39,114 | INFO     | will abort loop
[2025-11-23 09:32:30] 2025-11-23 08:31:39,280 | INFO     | all data control threads have been joined
[2025-11-23 09:32:30] 2025-11-23 08:31:39,410 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 09:32:30] 2025-11-23 08:31:39,583 | INFO     | all payload control threads have been joined
[2025-11-23 09:32:30] 2025-11-23 08:31:39,961 | INFO     | [job] retrieve thread has finished
[2025-11-23 09:32:30] 2025-11-23 08:31:39,961 | INFO     | [job] queue monitor thread has finished
[2025-11-23 09:32:30] 2025-11-23 08:31:40,119 | INFO     | [job] job monitor thread has finished
[2025-11-23 09:32:30] 2025-11-23 08:31:40,186 | INFO     | all job control threads have been joined
[2025-11-23 09:32:30] 2025-11-23 08:31:40,245 | INFO     | [payload] validate_post thread has finished
[2025-11-23 09:32:30] 2025-11-23 08:31:40,287 | INFO     | [data] control thread has finished
[2025-11-23 09:32:30] 2025-11-23 08:31:40,369 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 09:32:30] 2025-11-23 08:31:40,455 | INFO     | [data] copytool_in thread has finished
[2025-11-23 09:32:30] 2025-11-23 08:31:40,589 | INFO     | [payload] control thread has finished
[2025-11-23 09:32:30] 2025-11-23 08:31:40,599 | INFO     | [job] validate thread has finished
[2025-11-23 09:32:30] 2025-11-23 08:31:40,687 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 09:32:30] 2025-11-23 08:31:40,745 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 09:32:30] 2025-11-23 08:31:40,816 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 09:32:30] 2025-11-23 08:31:41,193 | INFO     | [job] control thread has finished
[2025-11-23 09:32:30] 2025-11-23 08:31:41,307 | INFO     | [payload] failed_post thread has finished
[2025-11-23 09:32:30] 2025-11-23 08:31:41,382 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 09:32:30] 2025-11-23 08:31:41,416 | INFO     | [data] copytool_out thread has finished
[2025-11-23 09:32:30] 2025-11-23 08:31:45,389 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 09:32:30] 2025-11-23 08:32:08,746 | INFO     | PID=2664766 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 09:32:30] 2025-11-23 08:32:08,746 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 09:32:30] 2025-11-23 08:32:08,746 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 09:32:30] 2025-11-23 08:32:08,746 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 09:32:30] 2025-11-23 08:32:23,815 | INFO     | [monitor] cgroup control has ended
[2025-11-23 09:32:30] 2025-11-23 08:32:25,183 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140067518019392)>', '<ExcThread(monitor, started 140067154663168)>']
[2025-11-23 09:32:30] 2025-11-23 08:32:25,836 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 09:32:30] 2025-11-23 08:32:25,836 | INFO     | [monitor] control thread has ended
[2025-11-23 09:32:30] 2025-11-23 08:32:30,209 | INFO     | all workflow threads have been joined
[2025-11-23 09:32:30] 2025-11-23 08:32:30,210 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 09:32:30] 2025-11-23 08:32:30,210 | INFO     | traces error code: 0
[2025-11-23 09:32:30] 2025-11-23 08:32:30,211 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 09:32:30] 2025-11-23 08:32:30,257 [wrapper] ==== pilot stdout END ====
[2025-11-23 09:32:30] 2025-11-23 08:32:30,261 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 09:32:30] 2025-11-23 08:32:30,264 [wrapper] pilotpid: 2664766
[2025-11-23 09:32:30] 2025-11-23 08:32:30,267 [wrapper] Pilot exit status: 0
[2025-11-23 09:32:30] 2025-11-23 08:32:30,274 [wrapper] pandaids: 6895338630
[2025-11-23 09:32:30] 2025-11-23 08:32:30,290 [wrapper] cleanup supervisor_pilot 2664772 2664767
[2025-11-23 09:32:30] 2025-11-23 08:32:30,293 [wrapper] Test setup, not cleaning
[2025-11-23 09:32:30] 2025-11-23 08:32:30,295 [wrapper] apfmon messages muted
[2025-11-23 09:32:30] 2025-11-23 08:32:30,298 [wrapper] ==== wrapper stdout END ====
[2025-11-23 09:32:30] 2025-11-23 08:32:30,300 [wrapper] ==== wrapper stderr END ====
[2025-11-23 09:32:30]  *** Error codes and diagnostics ***
[2025-11-23 09:32:30]     "exeErrorCode": 65,
[2025-11-23 09:32:30]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-23 09:32:30]     "pilotErrorCode": 1305,
[2025-11-23 09:32:30]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-23 09:32:30]  *** Listing of results directory ***
[2025-11-23 09:32:30] total 404148
[2025-11-23 09:32:30] -rw-r--r-- 1 boinc boinc    576529 Nov 22 10:26 pilot3.tar.gz
[2025-11-23 09:32:30] -rw-r--r-- 1 boinc boinc      5112 Nov 22 10:38 queuedata.json
[2025-11-23 09:32:30] -rwx------ 1 boinc boinc     36292 Nov 22 10:39 runpilot2-wrapper.sh
[2025-11-23 09:32:30] -rw-r--r-- 1 boinc boinc       100 Nov 23 09:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 09:32:30] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 09:28 run_atlas
[2025-11-23 09:32:30] -rw-r--r-- 1 boinc boinc       105 Nov 23 09:28 job.xml
[2025-11-23 09:32:30] -rw-r--r-- 2 boinc boinc 409645386 Nov 23 09:28 EVNT.47483658._001081.pool.root.1
[2025-11-23 09:32:30] drwxrwx--x 2 boinc boinc      4096 Nov 23 09:28 shared
[2025-11-23 09:32:30] -rw-r--r-- 2 boinc boinc    590101 Nov 23 09:28 input.tar.gz
[2025-11-23 09:32:30] -rw-r--r-- 2 boinc boinc     15847 Nov 23 09:28 start_atlas.sh
[2025-11-23 09:32:30] -rw-r--r-- 1 boinc boinc         0 Nov 23 09:28 boinc_setup_complete
[2025-11-23 09:32:30] -rw-r--r-- 1 boinc boinc      6194 Nov 23 09:28 init_data.xml
[2025-11-23 09:32:30] -rw-r--r-- 1 boinc boinc         0 Nov 23 09:28 boinc_lockfile
[2025-11-23 09:32:30] -rw-r--r-- 1 boinc boinc      2784 Nov 23 09:28 pandaJob.out
[2025-11-23 09:32:30] -rw------- 1 boinc boinc    989784 Nov 23 09:28 agis_schedconf.cvmfs.json
[2025-11-23 09:32:30] -rw------- 1 boinc boinc   1526164 Nov 23 09:28 agis_ddmendpoints.agis.ALL.json
[2025-11-23 09:32:30] drwx------ 5 boinc boinc      4096 Nov 23 09:28 pilot3
[2025-11-23 09:32:30] -rw-r--r-- 1 boinc boinc       522 Nov 23 09:29 boinc_task_state.xml
[2025-11-23 09:32:30] -rw------- 1 boinc boinc       951 Nov 23 09:29 memory_monitor_summary.json
[2025-11-23 09:32:30] -rw------- 1 boinc boinc     55831 Nov 23 09:29 log.47556149._000678.job.log.tgz.1
[2025-11-23 09:32:30] -rw------- 1 boinc boinc        95 Nov 23 09:31 pilot_heartbeat.json
[2025-11-23 09:32:30] -rw------- 1 boinc boinc      8411 Nov 23 09:31 heartbeat.json
[2025-11-23 09:32:30] -rw-r--r-- 1 boinc boinc      8192 Nov 23 09:32 boinc_mmap_file
[2025-11-23 09:32:30] -rw-r--r-- 1 boinc boinc        22 Nov 23 09:32 wrapper_checkpoint.txt
[2025-11-23 09:32:30] -rw------- 1 boinc boinc      4938 Nov 23 09:32 pilotlog.txt
[2025-11-23 09:32:30] -rw------- 1 boinc boinc     93626 Nov 23 09:32 log.47556149._000678.job.log.1
[2025-11-23 09:32:30] -rw------- 1 boinc boinc       186 Nov 23 09:32 output.list
[2025-11-23 09:32:30] -rw-r--r-- 1 boinc boinc       620 Nov 23 09:32 runtime_log
[2025-11-23 09:32:30] -rw------- 1 boinc boinc    174080 Nov 23 09:32 result.tar.gz
[2025-11-23 09:32:30] -rw-r--r-- 1 boinc boinc      8744 Nov 23 09:32 runtime_log.err
[2025-11-23 09:32:30] -rw------- 1 boinc boinc       649 Nov 23 09:32 IBoLDmUGzg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmq5JKDmPDyafn.diag
[2025-11-23 09:32:30] -rw-r--r-- 1 boinc boinc      8118 Nov 23 09:32 stderr.txt
[2025-11-23 09:32:30] No HITS result produced
[2025-11-23 09:32:30]  *** Contents of shared directory: ***
[2025-11-23 09:32:30] total 400816
[2025-11-23 09:32:30] -rw-r--r-- 2 boinc boinc 409645386 Nov 23 09:28 ATLAS.root_0
[2025-11-23 09:32:30] -rw-r--r-- 2 boinc boinc    590101 Nov 23 09:28 input.tar.gz
[2025-11-23 09:32:30] -rw-r--r-- 2 boinc boinc     15847 Nov 23 09:28 start_atlas.sh
[2025-11-23 09:32:30] -rw------- 1 boinc boinc    174080 Nov 23 09:32 result.tar.gz
09:32:32 (2661036): run_atlas exited; CPU time 32.009793
09:32:32 (2661036): called boinc_finish(0)

</stderr_txt>
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