Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:55:38 (8510): wrapper (7.7.26015): starting
09:55:38 (8510): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 09:55:38] Arguments: --nthreads 8
[2025-11-25 09:55:38] Threads: 8
[2025-11-25 09:55:38] Checking for CVMFS
[2025-11-25 09:55:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 09:55:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 09:55:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 09:55:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 09:55:41] 2.11.2.0 4058 283690 137744 153276 2 60 24590729 25165825 4632 130560 8 145688845 99.882 84671504 3074 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 09:55:41] CVMFS is ok
[2025-11-25 09:55:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 09:55:41] Checking for apptainer binary...
[2025-11-25 09:55:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 09:55:41] Running /usr/bin/apptainer --version
[2025-11-25 09:55:41] apptainer version 1.3.2-1.el7
[2025-11-25 09:55:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 09:56:01] cg-vwn233.simple-grid.lan
[2025-11-25 09:56:01] apptainer works
[2025-11-25 09:56:01] Set ATHENA_PROC_NUMBER=8
[2025-11-25 09:56:01] Set ATHENA_CORE_NUMBER=8
[2025-11-25 09:56:01] Starting ATLAS job with PandaID=6895338675
[2025-11-25 09:56:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 11:52:04]  *** The last 200 lines of the pilot log: ***
[2025-11-26 11:52:04] 2025-11-26 10:51:17,721 | INFO     | time since job start (93125s) is within the limit (172800.0s)
[2025-11-26 11:52:04] 2025-11-26 10:51:18,080 | INFO     | monitor loop #6227: job 0:6895338675 is in state 'finished'
[2025-11-26 11:52:04] 2025-11-26 10:51:18,081 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 11:52:04] 2025-11-26 10:51:19,003 | INFO     | PID=12328 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 11:52:04] 2025-11-26 10:51:19,003 | INFO     | .. there are 9 such processes running
[2025-11-26 11:52:04] 2025-11-26 10:51:20,013 | INFO     | time since job start (93128s) is within the limit (172800.0s)
[2025-11-26 11:52:04] 2025-11-26 10:51:20,586 | INFO     | monitor loop #6228: job 0:6895338675 is in state 'finished'
[2025-11-26 11:52:04] 2025-11-26 10:51:20,587 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 11:52:04] 2025-11-26 10:51:22,026 | INFO     | time since job start (93130s) is within the limit (172800.0s)
[2025-11-26 11:52:04] 2025-11-26 10:51:23,091 | INFO     | monitor loop #6229: job 0:6895338675 is in state 'finished'
[2025-11-26 11:52:04] 2025-11-26 10:51:23,092 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 11:52:04] 2025-11-26 10:51:24,032 | INFO     | time since job start (93132s) is within the limit (172800.0s)
[2025-11-26 11:52:04] 2025-11-26 10:51:25,597 | INFO     | monitor loop #6230: job 0:6895338675 is in state 'finished'
[2025-11-26 11:52:04] 2025-11-26 10:51:25,598 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 11:52:04] 2025-11-26 10:51:26,037 | INFO     | time since job start (93134s) is within the limit (172800.0s)
[2025-11-26 11:52:04] 2025-11-26 10:51:27,662 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 11:52:04] 2025-11-26 10:51:27,663 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 11:52:04] 2025-11-26 10:51:27,665 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6895338675/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 11:52:04] 2025-11-26 10:51:27,666 | INFO     | extracted standard info from prmon json
[2025-11-26 11:52:04] 2025-11-26 10:51:27,666 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 11:52:04] 2025-11-26 10:51:27,666 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 11:52:04] 2025-11-26 10:51:27,704 | INFO     | fitting pss+swap vs Time
[2025-11-26 11:52:04] 2025-11-26 10:51:27,707 | INFO     | sum of square deviations: 1082513042586.0752
[2025-11-26 11:52:04] 2025-11-26 10:51:27,802 | INFO     | sum of deviations: 4697124059672.603
[2025-11-26 11:52:04] 2025-11-26 10:51:27,803 | INFO     | mean x: 1764107904.1601846
[2025-11-26 11:52:04] 2025-11-26 10:51:27,803 | INFO     | mean y: 2838567.993408042
[2025-11-26 11:52:04] 2025-11-26 10:51:27,803 | INFO     | intersect: -7651788539.957154
[2025-11-26 11:52:04] 2025-11-26 10:51:27,805 | INFO     | chi2: 27.892178874237363
[2025-11-26 11:52:04] 2025-11-26 10:51:27,807 | INFO     | sum of square deviations: 1071844951439.3232
[2025-11-26 11:52:04] 2025-11-26 10:51:27,897 | INFO     | sum of deviations: 5191248076648.167
[2025-11-26 11:52:04] 2025-11-26 10:51:27,897 | INFO     | mean x: 1764107751.6640213
[2025-11-26 11:52:04] 2025-11-26 10:51:27,897 | INFO     | mean y: 2845632.5416666665
[2025-11-26 11:52:04] 2025-11-26 10:51:27,898 | INFO     | intersect: -8541226866.496827
[2025-11-26 11:52:04] 2025-11-26 10:51:27,900 | INFO     | chi2: 24.81404062679045
[2025-11-26 11:52:04] 2025-11-26 10:51:27,900 | INFO     | current chi2=24.81404062679045 (change=11.035847221996836 %)
[2025-11-26 11:52:04] 2025-11-26 10:51:27,900 | INFO     | right removable region: 1511
[2025-11-26 11:52:04] 2025-11-26 10:51:27,902 | INFO     | sum of square deviations: 1071843877839.3234
[2025-11-26 11:52:04] 2025-11-26 10:51:27,994 | INFO     | sum of deviations: 4042207548207.164
[2025-11-26 11:52:04] 2025-11-26 10:51:27,994 | INFO     | mean x: 1764108056.6640213
[2025-11-26 11:52:04] 2025-11-26 10:51:27,994 | INFO     | mean y: 2847929.293650794
[2025-11-26 11:52:04] 2025-11-26 10:51:27,995 | INFO     | intersect: -6650071446.3109255
[2025-11-26 11:52:04] 2025-11-26 10:51:27,997 | INFO     | chi2: 22.76714375967814
[2025-11-26 11:52:04] 2025-11-26 10:51:27,997 | INFO     | current chi2=22.76714375967814 (change=18.37445234259904 %)
[2025-11-26 11:52:04] 2025-11-26 10:51:27,997 | INFO     | left removable region: 10
[2025-11-26 11:52:04] 2025-11-26 10:51:27,999 | INFO     | sum of square deviations: 1048620226956.31
[2025-11-26 11:52:04] 2025-11-26 10:51:28,051 | INFO     | time since job start (93136s) is within the limit (172800.0s)
[2025-11-26 11:52:04] 2025-11-26 10:51:28,089 | INFO     | sum of deviations: 4051681544363.1895
[2025-11-26 11:52:04] 2025-11-26 10:51:28,089 | INFO     | mean x: 1764108026.1725516
[2025-11-26 11:52:04] 2025-11-26 10:51:28,089 | INFO     | mean y: 2865669.431712192
[2025-11-26 11:52:04] 2025-11-26 10:51:28,090 | INFO     | intersect: -6813333129.873063
[2025-11-26 11:52:04] 2025-11-26 10:51:28,092 | INFO     | chi2: 14.384669912843489
[2025-11-26 11:52:04] 2025-11-26 10:51:28,092 | INFO     | current memory leak: 3.86 B/s (using 1501 data points, chi2=14.38)
[2025-11-26 11:52:04] 2025-11-26 10:51:28,093 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-26 11:52:04] 2025-11-26 10:51:28,094 | INFO     | ..............................
[2025-11-26 11:52:04] 2025-11-26 10:51:28,094 | INFO     | . Timing measurements:
[2025-11-26 11:52:04] 2025-11-26 10:51:28,094 | INFO     | . get job = 0 s
[2025-11-26 11:52:04] 2025-11-26 10:51:28,094 | INFO     | . initial setup = 4 s
[2025-11-26 11:52:04] 2025-11-26 10:51:28,094 | INFO     | . payload setup = 161 s
[2025-11-26 11:52:04] 2025-11-26 10:51:28,094 | INFO     | . stage-in = 0 s
[2025-11-26 11:52:04] 2025-11-26 10:51:28,094 | INFO     | . payload execution = 92680 s
[2025-11-26 11:52:04] 2025-11-26 10:51:28,094 | INFO     | . stage-out = 5 s
[2025-11-26 11:52:04] 2025-11-26 10:51:28,095 | INFO     | . log creation = 2 s
[2025-11-26 11:52:04] 2025-11-26 10:51:28,095 | INFO     | ..............................
[2025-11-26 11:52:04] 2025-11-26 10:51:28,229 | INFO     | 
[2025-11-26 11:52:04] 2025-11-26 10:51:28,230 | INFO     | job summary report
[2025-11-26 11:52:04] 2025-11-26 10:51:28,230 | INFO     | --------------------------------------------------
[2025-11-26 11:52:04] 2025-11-26 10:51:28,230 | INFO     | PanDA job id: 6895338675
[2025-11-26 11:52:04] 2025-11-26 10:51:28,230 | INFO     | task id: 47556137
[2025-11-26 11:52:04] 2025-11-26 10:51:28,230 | INFO     | errors: (none)
[2025-11-26 11:52:04] 2025-11-26 10:51:28,230 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 11:52:04] 2025-11-26 10:51:28,230 | INFO     | pilot state: finished 
[2025-11-26 11:52:04] 2025-11-26 10:51:28,230 | INFO     | transexitcode: 0
[2025-11-26 11:52:04] 2025-11-26 10:51:28,230 | INFO     | exeerrorcode: 0
[2025-11-26 11:52:04] 2025-11-26 10:51:28,231 | INFO     | exeerrordiag: 
[2025-11-26 11:52:04] 2025-11-26 10:51:28,231 | INFO     | exitcode: 0
[2025-11-26 11:52:04] 2025-11-26 10:51:28,231 | INFO     | exitmsg: OK
[2025-11-26 11:52:04] 2025-11-26 10:51:28,231 | INFO     | cpuconsumptiontime: 346887 s
[2025-11-26 11:52:04] 2025-11-26 10:51:28,231 | INFO     | nevents: 1000
[2025-11-26 11:52:04] 2025-11-26 10:51:28,231 | INFO     | neventsw: 0
[2025-11-26 11:52:04] 2025-11-26 10:51:28,231 | INFO     | pid: 18985
[2025-11-26 11:52:04] 2025-11-26 10:51:28,231 | INFO     | pgrp: 18985
[2025-11-26 11:52:04] 2025-11-26 10:51:28,231 | INFO     | corecount: 8
[2025-11-26 11:52:04] 2025-11-26 10:51:28,231 | INFO     | event service: False
[2025-11-26 11:52:04] 2025-11-26 10:51:28,231 | INFO     | sizes: {0: 2283986, 1: 2284241, 12: 2284241, 23: 2284269, 33: 2284297, 44: 2284353, 55: 2284509, 66: 2284537, 76: 2284565, 87: 2284621, 93: 2284911, 98: 2285219, 9
[2025-11-26 11:52:04] 2025-11-26 10:51:28,232 | INFO     | --------------------------------------------------
[2025-11-26 11:52:04] 2025-11-26 10:51:28,232 | INFO     | 
[2025-11-26 11:52:04] 2025-11-26 10:51:28,232 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-11-26 11:52:04] 2025-11-26 10:51:28,490 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 11:52:04] 2025-11-26 10:51:28,490 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 11:52:04] 2025-11-26 10:51:28,491 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 11:52:04] 2025-11-26 10:51:28,491 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 11:52:04] 2025-11-26 10:51:28,491 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 11:52:04] 2025-11-26 10:51:28,491 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 11:52:04] 2025-11-26 10:51:28,491 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 11:52:04] 2025-11-26 10:51:28,491 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 11:52:04] 2025-11-26 10:51:28,491 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 11:52:04] 2025-11-26 10:51:28,491 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 11:52:04] 2025-11-26 10:51:28,491 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 11:52:04] 2025-11-26 10:51:28,492 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 11:52:04] 2025-11-26 10:51:28,492 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 11:52:04] 2025-11-26 10:51:28,492 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 11:52:04] 2025-11-26 10:51:28,492 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 11:52:04] 2025-11-26 10:51:28,492 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 11:52:04] 2025-11-26 10:51:28,492 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 11:52:04] 2025-11-26 10:51:28,492 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 11:52:04] 2025-11-26 10:51:28,492 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 11:52:04] 2025-11-26 10:51:28,492 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 11:52:04] 2025-11-26 10:51:28,493 | INFO     | job 6895338675 has completed (purged errors)
[2025-11-26 11:52:04] 2025-11-26 10:51:28,493 | INFO     | overall cleanup function is called
[2025-11-26 11:52:04] 2025-11-26 10:51:29,511 | INFO     | --- collectZombieJob: --- 10, [18985]
[2025-11-26 11:52:04] 2025-11-26 10:51:29,512 | INFO     | zombie collector waiting for pid 18985
[2025-11-26 11:52:04] 2025-11-26 10:51:29,512 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 11:52:04] 2025-11-26 10:51:29,512 | INFO     | collected zombie processes
[2025-11-26 11:52:04] 2025-11-26 10:51:29,512 | INFO     | will attempt to kill all subprocesses of pid=18985
[2025-11-26 11:52:04] 2025-11-26 10:51:29,633 | INFO     | process IDs to be killed: [18985] (in reverse order)
[2025-11-26 11:52:04] 2025-11-26 10:51:30,565 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 11:52:04] 2025-11-26 10:51:30,565 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 11:52:04] 2025-11-26 10:51:30,568 | INFO     | did not find any defunct processes belonging to 18985
[2025-11-26 11:52:04] 2025-11-26 10:51:30,571 | INFO     | did not find any defunct processes belonging to 18985
[2025-11-26 11:52:04] 2025-11-26 10:51:30,619 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 11:52:04] 2025-11-26 10:51:30,619 | INFO     | ready for new job
[2025-11-26 11:52:04] 2025-11-26 10:51:30,619 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 11:52:04] 2025-11-26 10:51:30,625 | INFO     | ***************************************
[2025-11-26 11:52:04] 2025-11-26 10:51:30,625 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 11:52:04] 2025-11-26 10:51:30,625 | INFO     | ***************************************
[2025-11-26 11:52:04] 2025-11-26 10:51:30,625 | INFO     | 
[2025-11-26 11:52:04] 2025-11-26 10:51:30,626 | INFO     | pilot is running in a VM
[2025-11-26 11:52:04] 2025-11-26 10:51:30,626 | INFO     | architecture information:
[2025-11-26 11:52:04] 2025-11-26 10:51:30,637 | INFO     | executing command: cat /etc/os-release
[2025-11-26 11:52:04] 2025-11-26 10:51:30,915 | INFO     | cat /etc/os-release:
[2025-11-26 11:52:04] NAME="CentOS Linux"
[2025-11-26 11:52:04] VERSION="7 (Core)"
[2025-11-26 11:52:04] ID="centos"
[2025-11-26 11:52:04] ID_LIKE="rhel fedora"
[2025-11-26 11:52:04] VERSION_ID="7"
[2025-11-26 11:52:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 11:52:04] ANSI_COLOR="0;31"
[2025-11-26 11:52:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 11:52:04] HOME_URL="https://www.centos.org/"
[2025-11-26 11:52:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 11:52:04] 
[2025-11-26 11:52:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 11:52:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 11:52:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 11:52:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 11:52:04] 
[2025-11-26 11:52:04] 2025-11-26 10:51:30,915 | INFO     | ***************************************
[2025-11-26 11:52:04] 2025-11-26 10:51:31,419 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-11-26 11:52:04] 2025-11-26 10:51:31,705 | INFO     | sufficient remaining disk space (495550726144 B)
[2025-11-26 11:52:04] 2025-11-26 10:51:31,705 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 11:52:04] 2025-11-26 10:51:31,705 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 11:52:04] 2025-11-26 10:51:31,705 | INFO     | update_server=False
[2025-11-26 11:52:04] 2025-11-26 10:51:31,705 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 11:52:04] 2025-11-26 10:51:31,706 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 11:52:04] 2025-11-26 10:51:31,706 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 11:52:04] 2025-11-26 10:51:31,707 | INFO     | aborting loop
[2025-11-26 11:52:04] 2025-11-26 10:51:31,914 | INFO     | all data control threads have been joined
[2025-11-26 11:52:04] 2025-11-26 10:51:32,459 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 11:52:04] 2025-11-26 10:51:32,473 | INFO     | all payload control threads have been joined
[2025-11-26 11:52:04] 2025-11-26 10:51:32,556 | INFO     | all job control threads have been joined
[2025-11-26 11:52:04] 2025-11-26 10:51:32,712 | INFO     | [job] retrieve thread has finished
[2025-11-26 11:52:04] 2025-11-26 10:51:32,713 | INFO     | [job] job monitor thread has finished
[2025-11-26 11:52:04] 2025-11-26 10:51:32,921 | INFO     | [data] control thread has finished
[2025-11-26 11:52:04] 2025-11-26 10:51:32,972 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 11:52:04] 2025-11-26 10:51:32,990 | INFO     | [job] validate thread has finished
[2025-11-26 11:52:04] 2025-11-26 10:51:33,031 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 11:52:04] 2025-11-26 10:51:33,193 | INFO     | [data] copytool_in thread has finished
[2025-11-26 11:52:04] 2025-11-26 10:51:33,243 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 11:52:04] 2025-11-26 10:51:33,254 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 11:52:04] 2025-11-26 10:51:33,480 | INFO     | [payload] control thread has finished
[2025-11-26 11:52:04] 2025-11-26 10:51:33,489 | INFO     | [payload] failed_post thread has finished
[2025-11-26 11:52:04] 2025-11-26 10:51:33,562 | INFO     | [job] control thread has finished
[2025-11-26 11:52:04] 2025-11-26 10:51:33,842 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 11:52:04] 2025-11-26 10:51:33,851 | INFO     | [payload] validate_post thread has finished
[2025-11-26 11:52:04] 2025-11-26 10:51:34,249 | INFO     | [job] queue monitor thread has finished
[2025-11-26 11:52:04] 2025-11-26 10:51:34,466 | INFO     | [data] copytool_out thread has finished
[2025-11-26 11:52:04] 2025-11-26 10:51:35,714 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 11:52:04] 2025-11-26 10:51:54,657 | INFO     | [monitor] cgroup control has ended
[2025-11-26 11:52:04] 2025-11-26 10:51:55,033 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140680513132352)>', '<ExcThread(monitor, started 140680194135808)>']
[2025-11-26 11:52:04] 2025-11-26 10:52:00,059 | INFO     | all workflow threads have been joined
[2025-11-26 11:52:04] 2025-11-26 10:52:00,060 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 11:52:04] 2025-11-26 10:52:00,060 | INFO     | traces error code: 0
[2025-11-26 11:52:04] 2025-11-26 10:52:00,060 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 11:52:04] 2025-11-26 10:52:01,238 | INFO     | PID=12328 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 11:52:04] 2025-11-26 10:52:01,239 | INFO     | .. there are 9 such processes running
[2025-11-26 11:52:04] 2025-11-26 10:52:01,240 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 11:52:04] 2025-11-26 10:52:01,240 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 11:52:04] 2025-11-26 10:52:01,240 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 11:52:04] 2025-11-26 10:52:01,240 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 11:52:04] 2025-11-26 10:52:01,240 | INFO     | [monitor] control thread has ended
[2025-11-26 11:52:04] 2025-11-26 10:52:01,533 [wrapper] ==== pilot stdout END ====
[2025-11-26 11:52:04] 2025-11-26 10:52:01,639 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 11:52:04] 2025-11-26 10:52:01,778 [wrapper] pilotpid: 12328
[2025-11-26 11:52:04] 2025-11-26 10:52:01,858 [wrapper] Pilot exit status: 0
[2025-11-26 11:52:04] 2025-11-26 10:52:02,128 [wrapper] pandaids: 6895338675
[2025-11-26 11:52:04] 2025-11-26 10:52:02,539 [wrapper] cleanup supervisor_pilot 26495 12329
[2025-11-26 11:52:04] 2025-11-26 10:52:02,612 [wrapper] Test setup, not cleaning
[2025-11-26 11:52:04] 2025-11-26 10:52:02,618 [wrapper] apfmon messages muted
[2025-11-26 11:52:04] 2025-11-26 10:52:02,624 [wrapper] ==== wrapper stdout END ====
[2025-11-26 11:52:04] 2025-11-26 10:52:02,635 [wrapper] ==== wrapper stderr END ====
[2025-11-26 11:52:04]  *** Error codes and diagnostics ***
[2025-11-26 11:52:04]     "exeErrorCode": 0,
[2025-11-26 11:52:04]     "exeErrorDiag": "",
[2025-11-26 11:52:04]     "pilotErrorCode": 0,
[2025-11-26 11:52:04]     "pilotErrorDiag": "",
[2025-11-26 11:52:04]  *** Listing of results directory ***
[2025-11-26 11:52:04] total 1334180
[2025-11-26 11:52:04] -rw-r--r--. 1 boinc boinc    576529 Nov 22 10:42 pilot3.tar.gz
[2025-11-26 11:52:04] -rwx------. 1 boinc boinc     36292 Nov 22 10:52 runpilot2-wrapper.sh
[2025-11-26 11:52:04] -rw-r--r--. 1 boinc boinc      5112 Nov 22 10:52 queuedata.json
[2025-11-26 11:52:04] -rw-r--r--. 1 boinc boinc       100 Nov 25 09:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 11:52:04] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 09:55 run_atlas
[2025-11-26 11:52:04] -rw-r--r--. 1 boinc boinc       105 Nov 25 09:55 job.xml
[2025-11-26 11:52:04] -rw-r--r--. 2 boinc boinc 409160292 Nov 25 09:55 EVNT.47483658._000337.pool.root.1
[2025-11-26 11:52:04] -rw-r--r--. 1 boinc boinc      6392 Nov 25 09:55 init_data.xml
[2025-11-26 11:52:04] -rw-r--r--. 2 boinc boinc     15847 Nov 25 09:55 start_atlas.sh
[2025-11-26 11:52:04] drwxrwx--x. 2 boinc boinc        68 Nov 25 09:55 shared
[2025-11-26 11:52:04] -rw-r--r--. 2 boinc boinc    590098 Nov 25 09:55 input.tar.gz
[2025-11-26 11:52:04] -rw-r--r--. 1 boinc boinc         0 Nov 25 09:55 boinc_lockfile
[2025-11-26 11:52:04] -rw-r--r--. 1 boinc boinc      2784 Nov 25 09:56 pandaJob.out
[2025-11-26 11:52:04] -rw-------. 1 boinc boinc    991858 Nov 25 09:59 agis_schedconf.cvmfs.json
[2025-11-26 11:52:04] drwx------. 5 boinc boinc      4096 Nov 25 09:59 pilot3
[2025-11-26 11:52:04] -rw-r--r--. 1 boinc boinc       533 Nov 26 11:26 boinc_task_state.xml
[2025-11-26 11:52:04] -rw-------. 1 boinc boinc 923154585 Nov 26 11:49 HITS.47556137._003335.pool.root.1
[2025-11-26 11:52:04] -rw-------. 1 boinc boinc      1031 Nov 26 11:49 memory_monitor_summary.json
[2025-11-26 11:52:04] -rw-------. 1 boinc boinc   1516240 Nov 26 11:49 agis_ddmendpoints.agis.ALL.json
[2025-11-26 11:52:04] -rw-------. 1 boinc boinc   2583907 Nov 26 11:49 log.47556137._003335.job.log.tgz.1
[2025-11-26 11:52:04] -rw-------. 1 boinc boinc      8626 Nov 26 11:51 heartbeat.json
[2025-11-26 11:52:04] -rw-r--r--. 1 boinc boinc      8192 Nov 26 11:51 boinc_mmap_file
[2025-11-26 11:52:04] -rw-r--r--. 1 boinc boinc        29 Nov 26 11:51 wrapper_checkpoint.txt
[2025-11-26 11:52:04] -rw-------. 1 boinc boinc        95 Nov 26 11:52 pilot_heartbeat.json
[2025-11-26 11:52:04] -rw-------. 1 boinc boinc       820 Nov 26 11:52 pilotlog.txt
[2025-11-26 11:52:04] -rw-------. 1 boinc boinc  12410402 Nov 26 11:52 log.47556137._003335.job.log.1
[2025-11-26 11:52:04] -rw-------. 1 boinc boinc       353 Nov 26 11:52 output.list
[2025-11-26 11:52:04] -rw-r--r--. 1 boinc boinc       620 Nov 26 11:52 runtime_log
[2025-11-26 11:52:04] -rw-------. 1 boinc boinc  15011840 Nov 26 11:52 result.tar.gz
[2025-11-26 11:52:04] -rw-r--r--. 1 boinc boinc      8817 Nov 26 11:52 runtime_log.err
[2025-11-26 11:52:04] -rw-------. 1 boinc boinc       662 Nov 26 11:52 cG2MDmNTzg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm85JKDmLlAVXm.diag
[2025-11-26 11:52:04] -rw-r--r--. 1 boinc boinc     21500 Nov 26 11:52 stderr.txt
[2025-11-26 11:52:04] HITS file was successfully produced:
[2025-11-26 11:52:04] -rw-------. 1 boinc boinc 923154585 Nov 26 11:49 shared/HITS.pool.root.1
[2025-11-26 11:52:04]  *** Contents of shared directory: ***
[2025-11-26 11:52:04] total 1316348
[2025-11-26 11:52:04] -rw-r--r--. 2 boinc boinc 409160292 Nov 25 09:55 ATLAS.root_0
[2025-11-26 11:52:04] -rw-r--r--. 2 boinc boinc     15847 Nov 25 09:55 start_atlas.sh
[2025-11-26 11:52:04] -rw-r--r--. 2 boinc boinc    590098 Nov 25 09:55 input.tar.gz
[2025-11-26 11:52:04] -rw-------. 1 boinc boinc 923154585 Nov 26 11:49 HITS.pool.root.1
[2025-11-26 11:52:04] -rw-------. 1 boinc boinc  15011840 Nov 26 11:52 result.tar.gz
11:52:05 (8510): run_atlas exited; CPU time 347566.483571
11:52:05 (8510): called boinc_finish(0)

</stderr_txt>
]]>

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