Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:49:35 (1772858): wrapper (7.7.26015): starting
11:49:35 (1772858): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 11:49:35] Arguments: --nthreads 8
[2025-11-23 11:49:35] Threads: 8
[2025-11-23 11:49:35] Checking for CVMFS
[2025-11-23 11:49:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 11:49:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 11:49:35] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 11:49:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 11:49:35] 2.13.3.0 11226 24294 325944 153215 3 320 18742546 32935936 15263 16776704 0 54113763 99.497 71312655 40130 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 11:49:35] CVMFS is ok
[2025-11-23 11:49:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 11:49:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 11:49:35] Further information can be found at the LHC@home message board.
[2025-11-23 11:49:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 11:49:35] Checking for apptainer binary...
[2025-11-23 11:49:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 11:49:35] Running /usr/bin/apptainer --version
[2025-11-23 11:49:35] apptainer version 1.4.4-1.el9
[2025-11-23 11:49:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 11:49:36] c6-2-29-3.aglt2.org
[2025-11-23 11:49:36] apptainer works
[2025-11-23 11:49:36] Set ATHENA_PROC_NUMBER=8
[2025-11-23 11:49:36] Set ATHENA_CORE_NUMBER=8
[2025-11-23 11:49:36] Starting ATLAS job with PandaID=6895323645
[2025-11-23 11:49:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 07:04:26]  *** The last 200 lines of the pilot log: ***
[2025-11-24 07:04:27] 2025-11-24 12:03:38,746 | INFO     | monitor loop #4317: job 0:6895323645 is in state 'finished'
[2025-11-24 07:04:27] 2025-11-24 12:03:38,746 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 07:04:27] 2025-11-24 12:03:40,704 | INFO     | PID=1776754 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 07:04:27] 2025-11-24 12:03:40,705 | INFO     | .. there are 25 such processes running
[2025-11-24 07:04:27] 2025-11-24 12:03:41,263 | INFO     | monitor loop #4318: job 0:6895323645 is in state 'finished'
[2025-11-24 07:04:27] 2025-11-24 12:03:41,263 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 07:04:27] 2025-11-24 12:03:41,706 | INFO     | time since job start (69228s) is within the limit (172800.0s)
[2025-11-24 07:04:27] 2025-11-24 12:03:43,713 | INFO     | time since job start (69230s) is within the limit (172800.0s)
[2025-11-24 07:04:27] 2025-11-24 12:03:43,786 | INFO     | monitor loop #4319: job 0:6895323645 is in state 'finished'
[2025-11-24 07:04:27] 2025-11-24 12:03:43,786 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 07:04:27] 2025-11-24 12:03:45,743 | INFO     | time since job start (69232s) is within the limit (172800.0s)
[2025-11-24 07:04:27] 2025-11-24 12:03:46,292 | INFO     | monitor loop #4320: job 0:6895323645 is in state 'finished'
[2025-11-24 07:04:27] 2025-11-24 12:03:46,292 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 07:04:27] 2025-11-24 12:03:47,768 | INFO     | time since job start (69234s) is within the limit (172800.0s)
[2025-11-24 07:04:27] 2025-11-24 12:03:48,799 | INFO     | monitor loop #4321: job 0:6895323645 is in state 'finished'
[2025-11-24 07:04:27] 2025-11-24 12:03:48,799 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 07:04:27] 2025-11-24 12:03:49,825 | INFO     | time since job start (69236s) is within the limit (172800.0s)
[2025-11-24 07:04:27] 2025-11-24 12:03:50,293 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 07:04:27] 2025-11-24 12:03:50,297 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2785.5397321428563
[2025-11-24 07:04:27] 2025-11-24 12:03:50,326 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895323645/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 07:04:27] 2025-11-24 12:03:50,326 | INFO     | extracted standard info from prmon json
[2025-11-24 07:04:27] 2025-11-24 12:03:50,326 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 07:04:27] 2025-11-24 12:03:50,326 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 07:04:27] 2025-11-24 12:03:50,377 | INFO     | fitting pss+swap vs Time
[2025-11-24 07:04:27] 2025-11-24 12:03:50,379 | INFO     | sum of square deviations: 452211300850.96716
[2025-11-24 07:04:27] 2025-11-24 12:03:50,423 | INFO     | sum of deviations: -1032392970362.7422
[2025-11-24 07:04:27] 2025-11-24 12:03:50,427 | INFO     | mean x: 1763951189.1261022
[2025-11-24 07:04:27] 2025-11-24 12:03:50,427 | INFO     | mean y: 2926769.89329806
[2025-11-24 07:04:27] 2025-11-24 12:03:50,427 | INFO     | intersect: 4030006155.768608
[2025-11-24 07:04:27] 2025-11-24 12:03:50,429 | INFO     | chi2: 34.91002679608448
[2025-11-24 07:04:27] 2025-11-24 12:03:50,430 | INFO     | sum of square deviations: 446257587477.43286
[2025-11-24 07:04:27] 2025-11-24 12:03:50,487 | INFO     | sum of deviations: -657039315774.7075
[2025-11-24 07:04:27] 2025-11-24 12:03:50,487 | INFO     | mean x: 1763951036.6421611
[2025-11-24 07:04:27] 2025-11-24 12:03:50,487 | INFO     | mean y: 2936381.2754650135
[2025-11-24 07:04:27] 2025-11-24 12:03:50,487 | INFO     | intersect: 2600057897.408927
[2025-11-24 07:04:27] 2025-11-24 12:03:50,548 | INFO     | chi2: 31.521574093570575
[2025-11-24 07:04:27] 2025-11-24 12:03:50,549 | INFO     | current chi2=31.521574093570575 (change=9.706244920138404 %)
[2025-11-24 07:04:27] 2025-11-24 12:03:50,549 | INFO     | right removable region: 1128
[2025-11-24 07:04:27] 2025-11-24 12:03:50,550 | INFO     | sum of square deviations: 446255354890.556
[2025-11-24 07:04:27] 2025-11-24 12:03:50,593 | INFO     | sum of deviations: -1340323282092.3362
[2025-11-24 07:04:27] 2025-11-24 12:03:50,594 | INFO     | mean x: 1763951341.6386182
[2025-11-24 07:04:27] 2025-11-24 12:03:50,598 | INFO     | mean y: 2934645.526129318
[2025-11-24 07:04:27] 2025-11-24 12:03:50,598 | INFO     | intersect: 5300944015.645818
[2025-11-24 07:04:27] 2025-11-24 12:03:50,600 | INFO     | chi2: 32.7965285349955
[2025-11-24 07:04:27] 2025-11-24 12:03:50,600 | INFO     | current chi2=32.7965285349955 (change=6.054129586993122 %)
[2025-11-24 07:04:27] 2025-11-24 12:03:50,600 | INFO     | left removable region: 10
[2025-11-24 07:04:27] 2025-11-24 12:03:50,601 | INFO     | sum of square deviations: 433340152335.69666
[2025-11-24 07:04:27] 2025-11-24 12:03:50,677 | INFO     | sum of deviations: -960327778459.2275
[2025-11-24 07:04:27] 2025-11-24 12:03:50,677 | INFO     | mean x: 1763951311.1618962
[2025-11-24 07:04:27] 2025-11-24 12:03:50,677 | INFO     | mean y: 2947875.0509838997
[2025-11-24 07:04:27] 2025-11-24 12:03:50,677 | INFO     | intersect: 3912051231.4509525
[2025-11-24 07:04:27] 2025-11-24 12:03:50,678 | INFO     | chi2: 28.74334494911869
[2025-11-24 07:04:27] 2025-11-24 12:03:50,679 | INFO     | current memory leak: -2.22 B/s (using 1118 data points, chi2=28.74)
[2025-11-24 07:04:27] 2025-11-24 12:03:50,680 | INFO     | could have reported an average CPU frequency of 2943 MHz (41 samples)
[2025-11-24 07:04:27] 2025-11-24 12:03:50,684 | INFO     | ..............................
[2025-11-24 07:04:27] 2025-11-24 12:03:50,684 | INFO     | . Timing measurements:
[2025-11-24 07:04:27] 2025-11-24 12:03:50,684 | INFO     | . get job = 0 s
[2025-11-24 07:04:27] 2025-11-24 12:03:50,684 | INFO     | . initial setup = 2 s
[2025-11-24 07:04:27] 2025-11-24 12:03:50,684 | INFO     | . payload setup = 9 s
[2025-11-24 07:04:27] 2025-11-24 12:03:50,685 | INFO     | . stage-in = 0 s
[2025-11-24 07:04:27] 2025-11-24 12:03:50,685 | INFO     | . payload execution = 69157 s
[2025-11-24 07:04:27] 2025-11-24 12:03:50,685 | INFO     | . stage-out = 8 s
[2025-11-24 07:04:27] 2025-11-24 12:03:50,685 | INFO     | . log creation = 1 s
[2025-11-24 07:04:27] 2025-11-24 12:03:50,685 | INFO     | ..............................
[2025-11-24 07:04:27] 2025-11-24 12:03:50,902 | INFO     | 
[2025-11-24 07:04:27] 2025-11-24 12:03:50,902 | INFO     | job summary report
[2025-11-24 07:04:27] 2025-11-24 12:03:50,902 | INFO     | --------------------------------------------------
[2025-11-24 07:04:27] 2025-11-24 12:03:50,902 | INFO     | PanDA job id: 6895323645
[2025-11-24 07:04:27] 2025-11-24 12:03:50,902 | INFO     | task id: 47556137
[2025-11-24 07:04:27] 2025-11-24 12:03:50,902 | INFO     | errors: (none)
[2025-11-24 07:04:27] 2025-11-24 12:03:50,902 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 07:04:27] 2025-11-24 12:03:50,903 | INFO     | pilot state: finished 
[2025-11-24 07:04:27] 2025-11-24 12:03:50,903 | INFO     | transexitcode: 0
[2025-11-24 07:04:27] 2025-11-24 12:03:50,903 | INFO     | exeerrorcode: 0
[2025-11-24 07:04:27] 2025-11-24 12:03:50,903 | INFO     | exeerrordiag: 
[2025-11-24 07:04:27] 2025-11-24 12:03:50,903 | INFO     | exitcode: 0
[2025-11-24 07:04:27] 2025-11-24 12:03:50,903 | INFO     | exitmsg: OK
[2025-11-24 07:04:27] 2025-11-24 12:03:50,903 | INFO     | cpuconsumptiontime: 236104 s
[2025-11-24 07:04:27] 2025-11-24 12:03:50,903 | INFO     | nevents: 1000
[2025-11-24 07:04:27] 2025-11-24 12:03:50,903 | INFO     | neventsw: 0
[2025-11-24 07:04:27] 2025-11-24 12:03:50,903 | INFO     | pid: 1784484
[2025-11-24 07:04:27] 2025-11-24 12:03:50,903 | INFO     | pgrp: 1784484
[2025-11-24 07:04:27] 2025-11-24 12:03:50,903 | INFO     | corecount: 8
[2025-11-24 07:04:27] 2025-11-24 12:03:50,903 | INFO     | event service: False
[2025-11-24 07:04:27] 2025-11-24 12:03:50,904 | INFO     | sizes: {0: 2298685, 1: 2298827, 7: 2299089, 11: 2299117, 69171: 2357071, 69179: 2366856, 69180: 2367040, 69219: 2367382}
[2025-11-24 07:04:27] 2025-11-24 12:03:50,904 | INFO     | --------------------------------------------------
[2025-11-24 07:04:27] 2025-11-24 12:03:50,904 | INFO     | 
[2025-11-24 07:04:27] 2025-11-24 12:03:50,904 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-24 07:04:27] 2025-11-24 12:03:50,974 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 07:04:27] 2025-11-24 12:03:50,975 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 07:04:27] 2025-11-24 12:03:50,975 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 07:04:27] 2025-11-24 12:03:50,975 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 07:04:27] 2025-11-24 12:03:50,975 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 07:04:27] 2025-11-24 12:03:50,975 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 07:04:27] 2025-11-24 12:03:50,975 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 07:04:27] 2025-11-24 12:03:50,975 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 07:04:27] 2025-11-24 12:03:50,975 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 07:04:27] 2025-11-24 12:03:50,975 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 07:04:27] 2025-11-24 12:03:50,975 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 07:04:27] 2025-11-24 12:03:50,975 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 07:04:27] 2025-11-24 12:03:50,975 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 07:04:27] 2025-11-24 12:03:50,975 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 07:04:27] 2025-11-24 12:03:50,976 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 07:04:27] 2025-11-24 12:03:50,976 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 07:04:27] 2025-11-24 12:03:50,976 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 07:04:27] 2025-11-24 12:03:50,976 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 07:04:27] 2025-11-24 12:03:50,981 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 07:04:27] 2025-11-24 12:03:50,981 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 07:04:27] 2025-11-24 12:03:50,981 | INFO     | job 6895323645 has completed (purged errors)
[2025-11-24 07:04:27] 2025-11-24 12:03:50,981 | INFO     | overall cleanup function is called
[2025-11-24 07:04:27] 2025-11-24 12:03:52,025 | INFO     | --- collectZombieJob: --- 10, [1784484]
[2025-11-24 07:04:27] 2025-11-24 12:03:52,025 | INFO     | zombie collector waiting for pid 1784484
[2025-11-24 07:04:27] 2025-11-24 12:03:52,025 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 07:04:27] 2025-11-24 12:03:52,025 | INFO     | collected zombie processes
[2025-11-24 07:04:27] 2025-11-24 12:03:52,025 | INFO     | will attempt to kill all subprocesses of pid=1784484
[2025-11-24 07:04:27] 2025-11-24 12:03:53,092 | INFO     | process IDs to be killed: [1784484] (in reverse order)
[2025-11-24 07:04:27] 2025-11-24 12:03:53,507 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 07:04:27] 2025-11-24 12:03:53,507 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 07:04:27] 2025-11-24 12:03:53,533 | INFO     | did not find any defunct processes belonging to 1784484
[2025-11-24 07:04:27] 2025-11-24 12:03:53,569 | INFO     | did not find any defunct processes belonging to 1784484
[2025-11-24 07:04:27] 2025-11-24 12:03:53,581 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 07:04:27] 2025-11-24 12:03:53,581 | INFO     | ready for new job
[2025-11-24 07:04:27] 2025-11-24 12:03:53,581 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 07:04:27] 2025-11-24 12:03:53,595 | INFO     | ***************************************
[2025-11-24 07:04:27] 2025-11-24 12:03:53,596 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 07:04:27] 2025-11-24 12:03:53,602 | INFO     | ***************************************
[2025-11-24 07:04:27] 2025-11-24 12:03:53,602 | INFO     | 
[2025-11-24 07:04:27] 2025-11-24 12:03:53,605 | INFO     | architecture information:
[2025-11-24 07:04:27] 2025-11-24 12:03:53,618 | INFO     | executing command: cat /etc/os-release
[2025-11-24 07:04:27] 2025-11-24 12:03:53,658 | INFO     | cat /etc/os-release:
[2025-11-24 07:04:27] NAME="CentOS Linux"
[2025-11-24 07:04:27] VERSION="7 (Core)"
[2025-11-24 07:04:27] ID="centos"
[2025-11-24 07:04:27] ID_LIKE="rhel fedora"
[2025-11-24 07:04:27] VERSION_ID="7"
[2025-11-24 07:04:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 07:04:27] ANSI_COLOR="0;31"
[2025-11-24 07:04:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 07:04:27] HOME_URL="https://www.centos.org/"
[2025-11-24 07:04:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 07:04:27] 
[2025-11-24 07:04:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 07:04:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 07:04:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 07:04:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 07:04:27] 
[2025-11-24 07:04:27] 2025-11-24 12:03:53,659 | INFO     | ***************************************
[2025-11-24 07:04:27] 2025-11-24 12:03:54,162 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-24 07:04:27] 2025-11-24 12:03:54,209 | INFO     | sufficient remaining disk space (68085088256 B)
[2025-11-24 07:04:27] 2025-11-24 12:03:54,210 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 07:04:27] 2025-11-24 12:03:54,210 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 07:04:27] 2025-11-24 12:03:54,210 | INFO     | update_server=False
[2025-11-24 07:04:27] 2025-11-24 12:03:54,210 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 07:04:27] 2025-11-24 12:03:54,227 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 07:04:27] 2025-11-24 12:03:54,342 | INFO     | all data control threads have been joined
[2025-11-24 07:04:27] 2025-11-24 12:03:54,766 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 07:04:27] 2025-11-24 12:03:54,977 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 07:04:27] 2025-11-24 12:03:54,977 | INFO     | aborting loop
[2025-11-24 07:04:27] 2025-11-24 12:03:55,216 | INFO     | [job] retrieve thread has finished
[2025-11-24 07:04:27] 2025-11-24 12:03:55,319 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 07:04:27] 2025-11-24 12:03:55,350 | INFO     | [data] control thread has finished
[2025-11-24 07:04:27] 2025-11-24 12:03:55,351 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 07:04:27] 2025-11-24 12:03:55,402 | INFO     | all job control threads have been joined
[2025-11-24 07:04:27] 2025-11-24 12:03:55,490 | INFO     | [job] validate thread has finished
[2025-11-24 07:04:27] 2025-11-24 12:03:55,503 | INFO     | all payload control threads have been joined
[2025-11-24 07:04:27] 2025-11-24 12:03:55,738 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 07:04:27] 2025-11-24 12:03:55,809 | INFO     | [payload] failed_post thread has finished
[2025-11-24 07:04:27] 2025-11-24 12:03:55,843 | INFO     | [payload] validate_post thread has finished
[2025-11-24 07:04:27] 2025-11-24 12:03:55,922 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 07:04:27] 2025-11-24 12:03:55,983 | INFO     | [job] job monitor thread has finished
[2025-11-24 07:04:27] 2025-11-24 12:03:56,408 | INFO     | [job] control thread has finished
[2025-11-24 07:04:27] 2025-11-24 12:03:56,480 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 07:04:27] 2025-11-24 12:03:56,509 | INFO     | [payload] control thread has finished
[2025-11-24 07:04:27] 2025-11-24 12:03:56,546 | INFO     | [data] copytool_in thread has finished
[2025-11-24 07:04:27] 2025-11-24 12:03:56,614 | INFO     | [monitor] cgroup control has ended
[2025-11-24 07:04:27] 2025-11-24 12:03:56,784 | INFO     | [data] copytool_out thread has finished
[2025-11-24 07:04:27] 2025-11-24 12:03:56,929 | INFO     | [job] queue monitor thread has finished
[2025-11-24 07:04:27] 2025-11-24 12:03:58,237 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 07:04:27] 2025-11-24 12:04:00,047 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140506050041664)>', '<ExcThread(monitor, started 140505400723200)>']
[2025-11-24 07:04:27] 2025-11-24 12:04:05,075 | INFO     | all workflow threads have been joined
[2025-11-24 07:04:27] 2025-11-24 12:04:05,075 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 07:04:27] 2025-11-24 12:04:05,075 | INFO     | traces error code: 0
[2025-11-24 07:04:27] 2025-11-24 12:04:05,076 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 07:04:27] 2025-11-24 12:04:24,688 | INFO     | PID=1776754 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 07:04:27] 2025-11-24 12:04:24,689 | INFO     | .. there are 25 such processes running
[2025-11-24 07:04:27] 2025-11-24 12:04:24,689 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 07:04:27] 2025-11-24 12:04:24,697 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 07:04:27] 2025-11-24 12:04:24,697 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 07:04:27] 2025-11-24 12:04:24,697 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 07:04:27] 2025-11-24 12:04:24,697 | INFO     | [monitor] control thread has ended
[2025-11-24 07:04:27] 2025-11-24 12:04:25,473 [wrapper] ==== pilot stdout END ====
[2025-11-24 07:04:27] 2025-11-24 12:04:25,483 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 07:04:27] 2025-11-24 12:04:25,515 [wrapper] pilotpid: 1776754
[2025-11-24 07:04:27] 2025-11-24 12:04:25,548 [wrapper] Pilot exit status: 0
[2025-11-24 07:04:27] 2025-11-24 12:04:25,763 [wrapper] pandaids: 6895323645
[2025-11-24 07:04:27] 2025-11-24 12:04:26,311 [wrapper] cleanup supervisor_pilot 1127531 1776755
[2025-11-24 07:04:27] 2025-11-24 12:04:26,328 [wrapper] Test setup, not cleaning
[2025-11-24 07:04:27] 2025-11-24 12:04:26,349 [wrapper] apfmon messages muted
[2025-11-24 07:04:27] 2025-11-24 12:04:26,384 [wrapper] ==== wrapper stdout END ====
[2025-11-24 07:04:27] 2025-11-24 12:04:26,408 [wrapper] ==== wrapper stderr END ====
[2025-11-24 07:04:27]  *** Error codes and diagnostics ***
[2025-11-24 07:04:27]     "exeErrorCode": 0,
[2025-11-24 07:04:27]     "exeErrorDiag": "",
[2025-11-24 07:04:27]     "pilotErrorCode": 0,
[2025-11-24 07:04:27]     "pilotErrorDiag": "",
[2025-11-24 07:04:27]  *** Listing of results directory ***
[2025-11-24 07:04:27] total 1321276
[2025-11-24 07:04:27] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 07:50 pilot3.tar.gz
[2025-11-24 07:04:27] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 08:06 queuedata.json
[2025-11-24 07:04:27] -rwx------. 1 boincer umatlas     36292 Nov 21 08:06 runpilot2-wrapper.sh
[2025-11-24 07:04:27] -rw-r--r--. 1 boincer umatlas       100 Nov 23 11:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 07:04:27] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 11:49 run_atlas
[2025-11-24 07:04:27] -rw-r--r--. 1 boincer umatlas       105 Nov 23 11:49 job.xml
[2025-11-24 07:04:27] -rw-r--r--. 2 boincer umatlas 410788993 Nov 23 11:49 EVNT.47483658._000002.pool.root.1
[2025-11-24 07:04:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 11:49 start_atlas.sh
[2025-11-24 07:04:27] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 11:49 shared
[2025-11-24 07:04:27] -rw-r--r--. 2 boincer umatlas    590100 Nov 23 11:49 input.tar.gz
[2025-11-24 07:04:27] -rw-r--r--. 1 boincer umatlas         0 Nov 23 11:49 boinc_lockfile
[2025-11-24 07:04:27] -rw-r--r--. 1 boincer umatlas      2782 Nov 23 11:49 pandaJob.out
[2025-11-24 07:04:27] -rw-------. 1 boincer umatlas        57 Nov 23 11:49 setup.sh.local
[2025-11-24 07:04:27] -rw-------. 1 boincer umatlas    989785 Nov 23 11:49 agis_schedconf.cvmfs.json
[2025-11-24 07:04:27] drwx------. 5 boincer umatlas      4096 Nov 23 11:49 pilot3
[2025-11-24 07:04:27] -rw-r--r--. 1 boincer umatlas       533 Nov 24 06:02 boinc_task_state.xml
[2025-11-24 07:04:27] -rw-r--r--. 1 boincer umatlas      6844 Nov 24 07:00 init_data.xml
[2025-11-24 07:04:27] -rw-------. 1 boincer umatlas 915914088 Nov 24 07:01 HITS.47556137._000018.pool.root.1
[2025-11-24 07:04:27] -rw-------. 1 boincer umatlas      1058 Nov 24 07:02 memory_monitor_summary.json
[2025-11-24 07:04:27] -rw-------. 1 boincer umatlas   1516227 Nov 24 07:03 agis_ddmendpoints.agis.ALL.json
[2025-11-24 07:04:27] -rw-------. 1 boincer umatlas   2250027 Nov 24 07:03 log.47556137._000018.job.log.tgz.1
[2025-11-24 07:04:27] -rw-------. 1 boincer umatlas        95 Nov 24 07:03 pilot_heartbeat.json
[2025-11-24 07:04:27] -rw-------. 1 boincer umatlas      8611 Nov 24 07:03 heartbeat.json
[2025-11-24 07:04:27] -rw-r--r--. 1 boincer umatlas        29 Nov 24 07:04 wrapper_checkpoint.txt
[2025-11-24 07:04:27] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 07:04 boinc_mmap_file
[2025-11-24 07:04:27] -rw-------. 1 boincer umatlas       823 Nov 24 07:04 pilotlog.txt
[2025-11-24 07:04:27] -rw-------. 1 boincer umatlas   8936509 Nov 24 07:04 log.47556137._000018.job.log.1
[2025-11-24 07:04:27] -rw-------. 1 boincer umatlas       353 Nov 24 07:04 output.list
[2025-11-24 07:04:27] -rw-r--r--. 1 boincer umatlas       620 Nov 24 07:04 runtime_log
[2025-11-24 07:04:27] -rw-------. 1 boincer umatlas  11202560 Nov 24 07:04 result.tar.gz
[2025-11-24 07:04:27] -rw-r--r--. 1 boincer umatlas      9348 Nov 24 07:04 runtime_log.err
[2025-11-24 07:04:27] -rw-------. 1 boincer umatlas       661 Nov 24 07:04 lMmNDmv1fg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm0cHKDmCiDuQn.diag
[2025-11-24 07:04:27] -rw-r--r--. 1 boincer umatlas     21851 Nov 24 07:04 stderr.txt
[2025-11-24 07:04:27] HITS file was successfully produced:
[2025-11-24 07:04:27] -rw-------. 1 boincer umatlas 915914088 Nov 24 07:01 shared/HITS.pool.root.1
[2025-11-24 07:04:27]  *** Contents of shared directory: ***
[2025-11-24 07:04:27] total 1307156
[2025-11-24 07:04:27] -rw-r--r--. 2 boincer umatlas 410788993 Nov 23 11:49 ATLAS.root_0
[2025-11-24 07:04:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 11:49 start_atlas.sh
[2025-11-24 07:04:27] -rw-r--r--. 2 boincer umatlas    590100 Nov 23 11:49 input.tar.gz
[2025-11-24 07:04:27] -rw-------. 1 boincer umatlas 915914088 Nov 24 07:01 HITS.pool.root.1
[2025-11-24 07:04:27] -rw-------. 1 boincer umatlas  11202560 Nov 24 07:04 result.tar.gz
07:04:29 (1772858): run_atlas exited; CPU time 237579.819954
07:04:29 (1772858): called boinc_finish(0)

</stderr_txt>
]]>

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