Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:49:25 (2745628): wrapper (7.7.26015): starting
08:49:25 (2745628): wrapper: running run_atlas (--nthreads 6)
[2025-11-24 08:49:25] Arguments: --nthreads 6
[2025-11-24 08:49:25] Threads: 6
[2025-11-24 08:49:25] Checking for CVMFS
[2025-11-24 08:49:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 08:49:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 08:49:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 08:49:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 08:49:26] 2.13.3.0 12099 7569 103348 153226 2 81 43113738 52428800 1609 130560 0 9762591 99.942 530741 23 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2025-11-24 08:49:26] CVMFS is ok
[2025-11-24 08:49:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 08:49:26] Checking for apptainer binary...
[2025-11-24 08:49:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 08:49:26] Running /usr/bin/apptainer --version
[2025-11-24 08:49:26] apptainer version 1.4.4-1.el9
[2025-11-24 08:49:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 08:49:26] testio008
[2025-11-24 08:49:26] apptainer works
[2025-11-24 08:49:26] Set ATHENA_PROC_NUMBER=6
[2025-11-24 08:49:26] Set ATHENA_CORE_NUMBER=6
[2025-11-24 08:49:26] Starting ATLAS job with PandaID=6895330482
[2025-11-24 08:49:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 15:25:17]  *** The last 200 lines of the pilot log: ***
[2025-11-24 15:25:17] 2025-11-24 06:24:15,978 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 15:25:17] 2025-11-24 06:24:15,978 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 15:25:17] 2025-11-24 06:24:15,984 | INFO     | fitting pss+swap vs Time
[2025-11-24 15:25:17] 2025-11-24 06:24:15,985 | INFO     | sum of square deviations: 17972543834.97686
[2025-11-24 15:25:17] 2025-11-24 06:24:15,988 | INFO     | sum of deviations: 282247011436.12396
[2025-11-24 15:25:17] 2025-11-24 06:24:15,988 | INFO     | mean x: 1763953563.007752
[2025-11-24 15:25:17] 2025-11-24 06:24:15,988 | INFO     | mean y: 2621592.9586563306
[2025-11-24 15:25:17] 2025-11-24 06:24:15,988 | INFO     | intersect: -27699112009.27749
[2025-11-24 15:25:17] 2025-11-24 06:24:15,989 | INFO     | chi2: 7.980722685477736
[2025-11-24 15:25:17] 2025-11-24 06:24:15,989 | INFO     | sum of square deviations: 17284894647.476543
[2025-11-24 15:25:17] 2025-11-24 06:24:15,992 | INFO     | sum of deviations: 391627331378.5291
[2025-11-24 15:25:17] 2025-11-24 06:24:15,993 | INFO     | mean x: 1763953410.5078535
[2025-11-24 15:25:17] 2025-11-24 06:24:15,993 | INFO     | mean y: 2645859.657068063
[2025-11-24 15:25:17] 2025-11-24 06:24:15,993 | INFO     | intersect: -39963601023.6642
[2025-11-24 15:25:17] 2025-11-24 06:24:15,993 | INFO     | chi2: 5.231005800842307
[2025-11-24 15:25:17] 2025-11-24 06:24:15,993 | INFO     | current chi2=5.231005800842307 (change=34.45448480046801 %)
[2025-11-24 15:25:17] 2025-11-24 06:24:15,994 | INFO     | sum of square deviations: 16615013234.976004
[2025-11-24 15:25:17] 2025-11-24 06:24:15,997 | INFO     | sum of deviations: 422917469141.8225
[2025-11-24 15:25:17] 2025-11-24 06:24:15,997 | INFO     | mean x: 1763953258.0079575
[2025-11-24 15:25:17] 2025-11-24 06:24:15,997 | INFO     | mean y: 2652903.3925729445
[2025-11-24 15:25:17] 2025-11-24 06:24:15,997 | INFO     | intersect: -44896898906.219635
[2025-11-24 15:25:17] 2025-11-24 06:24:15,997 | INFO     | chi2: 4.357417942757246
[2025-11-24 15:25:17] 2025-11-24 06:24:15,997 | INFO     | current chi2=4.357417942757246 (change=16.700189052445584 %)
[2025-11-24 15:25:17] 2025-11-24 06:24:15,998 | INFO     | right removable region: 376
[2025-11-24 15:25:17] 2025-11-24 06:24:15,998 | INFO     | sum of square deviations: 17284892817.476543
[2025-11-24 15:25:17] 2025-11-24 06:24:16,001 | INFO     | sum of deviations: 167712237976.69138
[2025-11-24 15:25:17] 2025-11-24 06:24:16,001 | INFO     | mean x: 1763953715.5078535
[2025-11-24 15:25:17] 2025-11-24 06:24:16,001 | INFO     | mean y: 2646969.769633508
[2025-11-24 15:25:17] 2025-11-24 06:24:16,001 | INFO     | intersect: -17112681915.348202
[2025-11-24 15:25:17] 2025-11-24 06:24:16,002 | INFO     | chi2: 5.206004814303837
[2025-11-24 15:25:17] 2025-11-24 06:24:16,002 | INFO     | current chi2=5.206004814303837 (change=34.76775200099314 %)
[2025-11-24 15:25:17] 2025-11-24 06:24:16,002 | INFO     | sum of square deviations: 16615009574.976004
[2025-11-24 15:25:17] 2025-11-24 06:24:16,006 | INFO     | sum of deviations: 87123799554.89917
[2025-11-24 15:25:17] 2025-11-24 06:24:16,006 | INFO     | mean x: 1763953868.0079575
[2025-11-24 15:25:17] 2025-11-24 06:24:16,006 | INFO     | mean y: 2665276.700265252
[2025-11-24 15:25:17] 2025-11-24 06:24:16,006 | INFO     | intersect: -9246944994.477463
[2025-11-24 15:25:17] 2025-11-24 06:24:16,006 | INFO     | chi2: 3.801139071837055
[2025-11-24 15:25:17] 2025-11-24 06:24:16,006 | INFO     | current chi2=3.801139071837055 (change=26.985486809517 %)
[2025-11-24 15:25:17] 2025-11-24 06:24:16,007 | INFO     | sum of square deviations: 15962661544.975748
[2025-11-24 15:25:17] 2025-11-24 06:24:16,010 | INFO     | sum of deviations: 72308969127.5727
[2025-11-24 15:25:17] 2025-11-24 06:24:16,010 | INFO     | mean x: 1763954020.5080645
[2025-11-24 15:25:17] 2025-11-24 06:24:16,010 | INFO     | mean y: 2668734.9758064514
[2025-11-24 15:25:17] 2025-11-24 06:24:16,010 | INFO     | intersect: -7987834380.810776
[2025-11-24 15:25:17] 2025-11-24 06:24:16,011 | INFO     | chi2: 3.7817825481820067
[2025-11-24 15:25:17] 2025-11-24 06:24:16,011 | INFO     | current chi2=3.7817825481820067 (change=0.5092295569626063 %)
[2025-11-24 15:25:17] 2025-11-24 06:24:16,011 | INFO     | left removable region: 30
[2025-11-24 15:25:17] 2025-11-24 06:24:16,011 | INFO     | sum of square deviations: 12844126062.474033
[2025-11-24 15:25:17] 2025-11-24 06:24:16,014 | INFO     | sum of deviations: 171533584195.00586
[2025-11-24 15:25:17] 2025-11-24 06:24:16,014 | INFO     | mean x: 1763954142.5086706
[2025-11-24 15:25:17] 2025-11-24 06:24:16,014 | INFO     | mean y: 2712962.1647398844
[2025-11-24 15:25:17] 2025-11-24 06:24:16,014 | INFO     | intersect: -23554933151.584007
[2025-11-24 15:25:17] 2025-11-24 06:24:16,015 | INFO     | chi2: 0.0664461173168828
[2025-11-24 15:25:17] 2025-11-24 06:24:16,015 | INFO     | current memory leak: 13.36 B/s (using 346 data points, chi2=0.07)
[2025-11-24 15:25:17] 2025-11-24 06:24:16,015 | INFO     | could have reported an average CPU frequency of 3218 MHz (16 samples)
[2025-11-24 15:25:17] 2025-11-24 06:24:16,015 | INFO     | ..............................
[2025-11-24 15:25:17] 2025-11-24 06:24:16,015 | INFO     | . Timing measurements:
[2025-11-24 15:25:17] 2025-11-24 06:24:16,015 | INFO     | . get job = 0 s
[2025-11-24 15:25:17] 2025-11-24 06:24:16,015 | INFO     | . initial setup = 3 s
[2025-11-24 15:25:17] 2025-11-24 06:24:16,015 | INFO     | . payload setup = 2 s
[2025-11-24 15:25:17] 2025-11-24 06:24:16,015 | INFO     | . stage-in = 0 s
[2025-11-24 15:25:17] 2025-11-24 06:24:16,015 | INFO     | . payload execution = 23597 s
[2025-11-24 15:25:17] 2025-11-24 06:24:16,016 | INFO     | . stage-out = 6 s
[2025-11-24 15:25:17] 2025-11-24 06:24:16,016 | INFO     | . log creation = 0 s
[2025-11-24 15:25:17] 2025-11-24 06:24:16,016 | INFO     | ..............................
[2025-11-24 15:25:17] 2025-11-24 06:24:16,096 | INFO     | 
[2025-11-24 15:25:17] 2025-11-24 06:24:16,096 | INFO     | job summary report
[2025-11-24 15:25:17] 2025-11-24 06:24:16,097 | INFO     | --------------------------------------------------
[2025-11-24 15:25:17] 2025-11-24 06:24:16,097 | INFO     | PanDA job id: 6895330482
[2025-11-24 15:25:17] 2025-11-24 06:24:16,097 | INFO     | task id: 47556137
[2025-11-24 15:25:17] 2025-11-24 06:24:16,097 | INFO     | errors: (none)
[2025-11-24 15:25:17] 2025-11-24 06:24:16,097 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 15:25:17] 2025-11-24 06:24:16,097 | INFO     | pilot state: finished 
[2025-11-24 15:25:17] 2025-11-24 06:24:16,097 | INFO     | transexitcode: 0
[2025-11-24 15:25:17] 2025-11-24 06:24:16,097 | INFO     | exeerrorcode: 0
[2025-11-24 15:25:17] 2025-11-24 06:24:16,097 | INFO     | exeerrordiag: 
[2025-11-24 15:25:17] 2025-11-24 06:24:16,097 | INFO     | exitcode: 0
[2025-11-24 15:25:17] 2025-11-24 06:24:16,097 | INFO     | exitmsg: OK
[2025-11-24 15:25:17] 2025-11-24 06:24:16,097 | INFO     | cpuconsumptiontime: 135642 s
[2025-11-24 15:25:17] 2025-11-24 06:24:16,097 | INFO     | nevents: 1000
[2025-11-24 15:25:17] 2025-11-24 06:24:16,097 | INFO     | neventsw: 0
[2025-11-24 15:25:17] 2025-11-24 06:24:16,097 | INFO     | pid: 2756224
[2025-11-24 15:25:17] 2025-11-24 06:24:16,097 | INFO     | pgrp: 2756224
[2025-11-24 15:25:17] 2025-11-24 06:24:16,097 | INFO     | corecount: 6
[2025-11-24 15:25:17] 2025-11-24 06:24:16,097 | INFO     | event service: False
[2025-11-24 15:25:17] 2025-11-24 06:24:16,098 | INFO     | sizes: {0: 2298807, 1: 2299069, 10: 2299097, 23603: 2335073, 23610: 2344095, 23611: 2344151, 23671: 2344525}
[2025-11-24 15:25:17] 2025-11-24 06:24:16,098 | INFO     | --------------------------------------------------
[2025-11-24 15:25:17] 2025-11-24 06:24:16,098 | INFO     | 
[2025-11-24 15:25:17] 2025-11-24 06:24:16,098 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-11-24 15:25:17] 2025-11-24 06:24:16,111 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 15:25:17] 2025-11-24 06:24:16,111 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 15:25:17] 2025-11-24 06:24:16,111 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 15:25:17] 2025-11-24 06:24:16,111 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 15:25:17] 2025-11-24 06:24:16,111 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 15:25:17] 2025-11-24 06:24:16,111 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 15:25:17] 2025-11-24 06:24:16,111 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 15:25:17] 2025-11-24 06:24:16,111 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 15:25:17] 2025-11-24 06:24:16,111 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 15:25:17] 2025-11-24 06:24:16,111 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 15:25:17] 2025-11-24 06:24:16,112 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 15:25:17] 2025-11-24 06:24:16,112 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 15:25:17] 2025-11-24 06:24:16,112 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 15:25:17] 2025-11-24 06:24:16,112 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 15:25:17] 2025-11-24 06:24:16,112 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 15:25:17] 2025-11-24 06:24:16,112 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 15:25:17] 2025-11-24 06:24:16,112 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 15:25:17] 2025-11-24 06:24:16,112 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 15:25:17] 2025-11-24 06:24:16,112 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 15:25:17] 2025-11-24 06:24:16,112 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 15:25:17] 2025-11-24 06:24:16,112 | INFO     | job 6895330482 has completed (purged errors)
[2025-11-24 15:25:17] 2025-11-24 06:24:16,112 | INFO     | overall cleanup function is called
[2025-11-24 15:25:17] 2025-11-24 06:24:17,125 | INFO     | --- collectZombieJob: --- 10, [2756224]
[2025-11-24 15:25:17] 2025-11-24 06:24:17,125 | INFO     | zombie collector waiting for pid 2756224
[2025-11-24 15:25:17] 2025-11-24 06:24:17,125 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 15:25:17] 2025-11-24 06:24:17,125 | INFO     | collected zombie processes
[2025-11-24 15:25:17] 2025-11-24 06:24:17,125 | INFO     | will attempt to kill all subprocesses of pid=2756224
[2025-11-24 15:25:17] 2025-11-24 06:24:17,194 | INFO     | process IDs to be killed: [2756224] (in reverse order)
[2025-11-24 15:25:17] 2025-11-24 06:24:17,212 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 15:25:17] 2025-11-24 06:24:17,213 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 15:25:17] 2025-11-24 06:24:17,214 | INFO     | did not find any defunct processes belonging to 2756224
[2025-11-24 15:25:17] 2025-11-24 06:24:17,216 | INFO     | did not find any defunct processes belonging to 2756224
[2025-11-24 15:25:17] 2025-11-24 06:24:17,216 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 15:25:17] 2025-11-24 06:24:17,216 | INFO     | ready for new job
[2025-11-24 15:25:17] 2025-11-24 06:24:17,216 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 15:25:17] 2025-11-24 06:24:17,217 | INFO     | ***************************************
[2025-11-24 15:25:17] 2025-11-24 06:24:17,217 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 15:25:17] 2025-11-24 06:24:17,217 | INFO     | ***************************************
[2025-11-24 15:25:17] 2025-11-24 06:24:17,217 | INFO     | 
[2025-11-24 15:25:17] 2025-11-24 06:24:17,218 | INFO     | architecture information:
[2025-11-24 15:25:17] 2025-11-24 06:24:17,218 | INFO     | executing command: cat /etc/os-release
[2025-11-24 15:25:17] 2025-11-24 06:24:17,224 | INFO     | cat /etc/os-release:
[2025-11-24 15:25:17] NAME="CentOS Linux"
[2025-11-24 15:25:17] VERSION="7 (Core)"
[2025-11-24 15:25:17] ID="centos"
[2025-11-24 15:25:17] ID_LIKE="rhel fedora"
[2025-11-24 15:25:17] VERSION_ID="7"
[2025-11-24 15:25:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 15:25:17] ANSI_COLOR="0;31"
[2025-11-24 15:25:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 15:25:17] HOME_URL="https://www.centos.org/"
[2025-11-24 15:25:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 15:25:17] 
[2025-11-24 15:25:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 15:25:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 15:25:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 15:25:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 15:25:17] 
[2025-11-24 15:25:17] 2025-11-24 06:24:17,224 | INFO     | ***************************************
[2025-11-24 15:25:17] 2025-11-24 06:24:17,727 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-11-24 15:25:17] 2025-11-24 06:24:17,733 | INFO     | sufficient remaining disk space (289518125056 B)
[2025-11-24 15:25:17] 2025-11-24 06:24:17,733 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 15:25:17] 2025-11-24 06:24:17,734 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 15:25:17] 2025-11-24 06:24:17,734 | INFO     | update_server=False
[2025-11-24 15:25:17] 2025-11-24 06:24:17,734 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 15:25:17] 2025-11-24 06:24:17,734 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 15:25:17] 2025-11-24 06:24:17,734 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 15:25:17] 2025-11-24 06:24:17,734 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 15:25:17] 2025-11-24 06:24:17,734 | INFO     | aborting loop
[2025-11-24 15:25:17] 2025-11-24 06:24:18,094 | INFO     | all data control threads have been joined
[2025-11-24 15:25:17] 2025-11-24 06:24:18,604 | INFO     | all job control threads have been joined
[2025-11-24 15:25:17] 2025-11-24 06:24:18,739 | INFO     | [job] queue monitor thread has finished
[2025-11-24 15:25:17] 2025-11-24 06:24:18,739 | INFO     | [job] retrieve thread has finished
[2025-11-24 15:25:17] 2025-11-24 06:24:18,739 | INFO     | [job] job monitor thread has finished
[2025-11-24 15:25:17] 2025-11-24 06:24:18,806 | INFO     | [payload] validate_post thread has finished
[2025-11-24 15:25:17] 2025-11-24 06:24:18,892 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 15:25:17] 2025-11-24 06:24:18,931 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 15:25:17] 2025-11-24 06:24:19,100 | INFO     | [data] control thread has finished
[2025-11-24 15:25:17] 2025-11-24 06:24:19,113 | INFO     | all payload control threads have been joined
[2025-11-24 15:25:17] 2025-11-24 06:24:19,292 | INFO     | [job] validate thread has finished
[2025-11-24 15:25:17] 2025-11-24 06:24:19,304 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 15:25:17] 2025-11-24 06:24:19,428 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 15:25:17] 2025-11-24 06:24:19,609 | INFO     | [job] control thread has finished
[2025-11-24 15:25:17] 2025-11-24 06:24:19,617 | INFO     | [payload] failed_post thread has finished
[2025-11-24 15:25:17] 2025-11-24 06:24:19,988 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 15:25:17] 2025-11-24 06:24:20,118 | INFO     | [payload] control thread has finished
[2025-11-24 15:25:17] 2025-11-24 06:24:20,166 | INFO     | [data] copytool_in thread has finished
[2025-11-24 15:25:17] 2025-11-24 06:24:20,937 | INFO     | [data] copytool_out thread has finished
[2025-11-24 15:25:17] 2025-11-24 06:24:21,739 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 15:25:17] 2025-11-24 06:24:48,708 | INFO     | PID=2749438 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 15:25:17] 2025-11-24 06:24:48,708 | INFO     | .. there are 3 such processes running
[2025-11-24 15:25:17] 2025-11-24 06:24:48,708 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 15:25:17] 2025-11-24 06:24:48,709 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 15:25:17] 2025-11-24 06:24:48,709 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 15:25:17] 2025-11-24 06:25:11,825 | INFO     | [monitor] cgroup control has ended
[2025-11-24 15:25:17] 2025-11-24 06:25:12,729 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139719002539840)>', '<ExcThread(monitor, started 139718721242880)>']
[2025-11-24 15:25:17] 2025-11-24 06:25:12,829 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 15:25:17] 2025-11-24 06:25:12,829 | INFO     | [monitor] control thread has ended
[2025-11-24 15:25:17] 2025-11-24 06:25:17,754 | INFO     | all workflow threads have been joined
[2025-11-24 15:25:17] 2025-11-24 06:25:17,754 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 15:25:17] 2025-11-24 06:25:17,754 | INFO     | traces error code: 0
[2025-11-24 15:25:17] 2025-11-24 06:25:17,754 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 15:25:17] 2025-11-24 06:25:17,808 [wrapper] ==== pilot stdout END ====
[2025-11-24 15:25:17] 2025-11-24 06:25:17,809 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 15:25:17] 2025-11-24 06:25:17,810 [wrapper] pilotpid: 2749438
[2025-11-24 15:25:17] 2025-11-24 06:25:17,811 [wrapper] Pilot exit status: 0
[2025-11-24 15:25:17] 2025-11-24 06:25:17,814 [wrapper] pandaids: 6895330482
[2025-11-24 15:25:17] 2025-11-24 06:25:17,825 [wrapper] cleanup supervisor_pilot 2889881 2749439
[2025-11-24 15:25:17] 2025-11-24 06:25:17,826 [wrapper] Test setup, not cleaning
[2025-11-24 15:25:17] 2025-11-24 06:25:17,827 [wrapper] apfmon messages muted
[2025-11-24 15:25:17] 2025-11-24 06:25:17,828 [wrapper] ==== wrapper stdout END ====
[2025-11-24 15:25:17] 2025-11-24 06:25:17,829 [wrapper] ==== wrapper stderr END ====
[2025-11-24 15:25:17]  *** Error codes and diagnostics ***
[2025-11-24 15:25:17]     "exeErrorCode": 0,
[2025-11-24 15:25:17]     "exeErrorDiag": "",
[2025-11-24 15:25:17]     "pilotErrorCode": 0,
[2025-11-24 15:25:17]     "pilotErrorDiag": "",
[2025-11-24 15:25:17]  *** Listing of results directory ***
[2025-11-24 15:25:17] total 1308456
[2025-11-24 15:25:17] -rw-r--r--. 1 boinc boinc    576529 Nov 22 06:26 pilot3.tar.gz
[2025-11-24 15:25:17] -rwx------. 1 boinc boinc     36292 Nov 22 06:30 runpilot2-wrapper.sh
[2025-11-24 15:25:17] -rw-r--r--. 1 boinc boinc      5112 Nov 22 06:30 queuedata.json
[2025-11-24 15:25:17] -rw-r--r--. 1 boinc boinc       100 Nov 24 08:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 15:25:17] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 08:49 run_atlas
[2025-11-24 15:25:17] -rw-r--r--. 1 boinc boinc       105 Nov 24 08:49 job.xml
[2025-11-24 15:25:17] -rw-r--r--. 2 boinc boinc     15847 Nov 24 08:49 start_atlas.sh
[2025-11-24 15:25:17] drwxrwx--x. 2 boinc boinc        68 Nov 24 08:49 shared
[2025-11-24 15:25:17] -rw-r--r--. 2 boinc boinc    590090 Nov 24 08:49 input.tar.gz
[2025-11-24 15:25:17] -rw-r--r--. 1 boinc boinc      9515 Nov 24 08:49 init_data.xml
[2025-11-24 15:25:17] -rw-r--r--. 2 boinc boinc 408904772 Nov 24 08:49 EVNT.47483658._000141.pool.root.1
[2025-11-24 15:25:17] -rw-r--r--. 1 boinc boinc         0 Nov 24 08:49 boinc_lockfile
[2025-11-24 15:25:17] -rw-r--r--. 1 boinc boinc      2786 Nov 24 08:49 pandaJob.out
[2025-11-24 15:25:17] -rw-------. 1 boinc boinc    989786 Nov 24 08:49 agis_schedconf.cvmfs.json
[2025-11-24 15:25:17] drwx------. 5 boinc boinc      4096 Nov 24 08:49 pilot3
[2025-11-24 15:25:17] -rw-r--r--. 1 boinc boinc       532 Nov 24 15:14 boinc_task_state.xml
[2025-11-24 15:25:17] -rw-------. 1 boinc boinc 917359619 Nov 24 15:22 HITS.47556137._001402.pool.root.1
[2025-11-24 15:25:17] -rw-------. 1 boinc boinc      1034 Nov 24 15:23 memory_monitor_summary.json
[2025-11-24 15:25:17] -rw-------. 1 boinc boinc   1526164 Nov 24 15:23 agis_ddmendpoints.agis.ALL.json
[2025-11-24 15:25:17] -rw-------. 1 boinc boinc   1445832 Nov 24 15:23 log.47556137._001402.job.log.tgz.1
[2025-11-24 15:25:17] -rw-------. 1 boinc boinc        95 Nov 24 15:24 pilot_heartbeat.json
[2025-11-24 15:25:17] -rw-------. 1 boinc boinc      8585 Nov 24 15:24 heartbeat.json
[2025-11-24 15:25:17] -rw-r--r--. 1 boinc boinc      8192 Nov 24 15:25 boinc_mmap_file
[2025-11-24 15:25:17] -rw-r--r--. 1 boinc boinc        29 Nov 24 15:25 wrapper_checkpoint.txt
[2025-11-24 15:25:17] -rw-------. 1 boinc boinc      4824 Nov 24 15:25 pilotlog.txt
[2025-11-24 15:25:17] -rw-------. 1 boinc boinc   3394878 Nov 24 15:25 log.47556137._001402.job.log.1
[2025-11-24 15:25:17] -rw-------. 1 boinc boinc       353 Nov 24 15:25 output.list
[2025-11-24 15:25:17] -rw-r--r--. 1 boinc boinc       620 Nov 24 15:25 runtime_log
[2025-11-24 15:25:17] -rw-------. 1 boinc boinc   4864000 Nov 24 15:25 result.tar.gz
[2025-11-24 15:25:17] -rw-------. 1 boinc boinc       650 Nov 24 15:25 ucPNDmxsng8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmoiJKDmOIu8Nn.diag
[2025-11-24 15:25:17] -rw-r--r--. 1 boinc boinc      8776 Nov 24 15:25 runtime_log.err
[2025-11-24 15:25:17] -rw-r--r--. 1 boinc boinc     20795 Nov 24 15:25 stderr.txt
[2025-11-24 15:25:17] HITS file was successfully produced:
[2025-11-24 15:25:17] -rw-------. 1 boinc boinc 917359619 Nov 24 15:22 shared/HITS.pool.root.1
[2025-11-24 15:25:17]  *** Contents of shared directory: ***
[2025-11-24 15:25:17] total 1300532
[2025-11-24 15:25:17] -rw-r--r--. 2 boinc boinc     15847 Nov 24 08:49 start_atlas.sh
[2025-11-24 15:25:17] -rw-r--r--. 2 boinc boinc    590090 Nov 24 08:49 input.tar.gz
[2025-11-24 15:25:17] -rw-r--r--. 2 boinc boinc 408904772 Nov 24 08:49 ATLAS.root_0
[2025-11-24 15:25:17] -rw-------. 1 boinc boinc 917359619 Nov 24 15:22 HITS.pool.root.1
[2025-11-24 15:25:17] -rw-------. 1 boinc boinc   4864000 Nov 24 15:25 result.tar.gz
15:25:19 (2745628): run_atlas exited; CPU time 135678.337467
15:25:19 (2745628): called boinc_finish(0)

</stderr_txt>
]]>

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