Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:40:17 (16061): wrapper (7.7.26015): starting
00:40:17 (16061): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:40:17] Arguments: --nthreads 8
[2025-11-26 00:40:17] Threads: 8
[2025-11-26 00:40:17] Checking for CVMFS
[2025-11-26 00:40:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:40:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:40:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:40:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:40:19] 2.11.2.0 31060 221699 142536 153302 3 181 22147984 25165825 4147 130560 11 115408563 99.900 46077812 2653 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 00:40:19] CVMFS is ok
[2025-11-26 00:40:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:40:19] Checking for apptainer binary...
[2025-11-26 00:40:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:40:19] Running /usr/bin/apptainer --version
[2025-11-26 00:40:19] apptainer version 1.3.2-1.el7
[2025-11-26 00:40:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:40:20] cg-vwn357.simple-grid.lan
[2025-11-26 00:40:20] apptainer works
[2025-11-26 00:40:20] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:40:20] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:40:20] Starting ATLAS job with PandaID=6895350258
[2025-11-26 00:40:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 00:45:24]  *** The last 200 lines of the pilot log: ***
[2025-11-27 00:45:24] 2025-11-26 23:44:33,474 | INFO     | time since job start (86630s) is within the limit (172800.0s)
[2025-11-27 00:45:24] 2025-11-26 23:44:35,153 | INFO     | monitor loop #5756: job 0:6895350258 is in state 'finished'
[2025-11-27 00:45:24] 2025-11-26 23:44:35,154 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:45:24] 2025-11-26 23:44:35,493 | INFO     | time since job start (86632s) is within the limit (172800.0s)
[2025-11-27 00:45:24] 2025-11-26 23:44:37,501 | INFO     | time since job start (86634s) is within the limit (172800.0s)
[2025-11-27 00:45:24] 2025-11-26 23:44:37,664 | INFO     | monitor loop #5757: job 0:6895350258 is in state 'finished'
[2025-11-27 00:45:24] 2025-11-26 23:44:37,665 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:45:24] 2025-11-26 23:44:39,508 | INFO     | time since job start (86636s) is within the limit (172800.0s)
[2025-11-27 00:45:24] 2025-11-26 23:44:40,169 | INFO     | monitor loop #5758: job 0:6895350258 is in state 'finished'
[2025-11-27 00:45:24] 2025-11-26 23:44:40,170 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:45:24] 2025-11-26 23:44:41,514 | INFO     | time since job start (86638s) is within the limit (172800.0s)
[2025-11-27 00:45:24] 2025-11-26 23:44:42,677 | INFO     | monitor loop #5759: job 0:6895350258 is in state 'finished'
[2025-11-27 00:45:24] 2025-11-26 23:44:42,678 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:45:24] 2025-11-26 23:44:43,521 | INFO     | time since job start (86640s) is within the limit (172800.0s)
[2025-11-27 00:45:24] 2025-11-26 23:44:44,428 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 00:45:24] 2025-11-26 23:44:44,429 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 00:45:24] 2025-11-26 23:44:44,431 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6895350258/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 00:45:24] 2025-11-26 23:44:44,431 | INFO     | extracted standard info from prmon json
[2025-11-27 00:45:24] 2025-11-26 23:44:44,431 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 00:45:24] 2025-11-26 23:44:44,431 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 00:45:24] 2025-11-26 23:44:44,469 | INFO     | fitting pss+swap vs Time
[2025-11-27 00:45:24] 2025-11-26 23:44:44,471 | INFO     | sum of square deviations: 884106649604.2059
[2025-11-27 00:45:24] 2025-11-26 23:44:44,552 | INFO     | sum of deviations: 2195426414631.3967
[2025-11-27 00:45:24] 2025-11-26 23:44:44,552 | INFO     | mean x: 1764157332.6071932
[2025-11-27 00:45:24] 2025-11-26 23:44:44,552 | INFO     | mean y: 2852633.901974612
[2025-11-27 00:45:24] 2025-11-26 23:44:44,552 | INFO     | intersect: -4377928360.4558735
[2025-11-27 00:45:24] 2025-11-26 23:44:44,554 | INFO     | chi2: 16.11751650159823
[2025-11-27 00:45:24] 2025-11-26 23:44:44,556 | INFO     | sum of square deviations: 874787688595.556
[2025-11-27 00:45:24] 2025-11-26 23:44:44,627 | INFO     | sum of deviations: 2664026704625.8887
[2025-11-27 00:45:24] 2025-11-26 23:44:44,627 | INFO     | mean x: 1764157180.1111112
[2025-11-27 00:45:24] 2025-11-26 23:44:44,627 | INFO     | mean y: 2860301.3446567585
[2025-11-27 00:45:24] 2025-11-26 23:44:44,627 | INFO     | intersect: -5369599668.363905
[2025-11-27 00:45:24] 2025-11-26 23:44:44,630 | INFO     | chi2: 12.900731753592597
[2025-11-27 00:45:24] 2025-11-26 23:44:44,630 | INFO     | current chi2=12.900731753592597 (change=19.958315213678578 %)
[2025-11-27 00:45:24] 2025-11-26 23:44:44,630 | INFO     | right removable region: 1412
[2025-11-27 00:45:24] 2025-11-26 23:44:44,632 | INFO     | sum of square deviations: 874786730895.5563
[2025-11-27 00:45:24] 2025-11-26 23:44:44,716 | INFO     | sum of deviations: 1737867080826.9949
[2025-11-27 00:45:24] 2025-11-26 23:44:44,717 | INFO     | mean x: 1764157485.1111112
[2025-11-27 00:45:24] 2025-11-26 23:44:44,717 | INFO     | mean y: 2860118.050955414
[2025-11-27 00:45:24] 2025-11-26 23:44:44,717 | INFO     | intersect: -3501846927.094182
[2025-11-27 00:45:24] 2025-11-26 23:44:44,718 | INFO     | chi2: 13.398292763656281
[2025-11-27 00:45:24] 2025-11-26 23:44:44,719 | INFO     | current chi2=13.398292763656281 (change=16.87123284578185 %)
[2025-11-27 00:45:24] 2025-11-26 23:44:44,719 | INFO     | left removable region: 10
[2025-11-27 00:45:24] 2025-11-26 23:44:44,721 | INFO     | sum of square deviations: 854515502435.5476
[2025-11-27 00:45:24] 2025-11-26 23:44:44,856 | INFO     | sum of deviations: 2174278658610.7244
[2025-11-27 00:45:24] 2025-11-26 23:44:44,857 | INFO     | mean x: 1764157454.6162624
[2025-11-27 00:45:24] 2025-11-26 23:44:44,857 | INFO     | mean y: 2871892.4679029956
[2025-11-27 00:45:24] 2025-11-26 23:44:44,857 | INFO     | intersect: -4485952351.291761
[2025-11-27 00:45:24] 2025-11-26 23:44:44,858 | INFO     | chi2: 9.113663298433368
[2025-11-27 00:45:24] 2025-11-26 23:44:44,859 | INFO     | current memory leak: 2.54 B/s (using 1402 data points, chi2=9.11)
[2025-11-27 00:45:24] 2025-11-26 23:44:44,860 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-11-27 00:45:24] 2025-11-26 23:44:44,860 | INFO     | ..............................
[2025-11-27 00:45:24] 2025-11-26 23:44:44,860 | INFO     | . Timing measurements:
[2025-11-27 00:45:24] 2025-11-26 23:44:44,860 | INFO     | . get job = 0 s
[2025-11-27 00:45:24] 2025-11-26 23:44:44,860 | INFO     | . initial setup = 2 s
[2025-11-27 00:45:24] 2025-11-26 23:44:44,861 | INFO     | . payload setup = 14 s
[2025-11-27 00:45:24] 2025-11-26 23:44:44,861 | INFO     | . stage-in = 0 s
[2025-11-27 00:45:24] 2025-11-26 23:44:44,861 | INFO     | . payload execution = 86500 s
[2025-11-27 00:45:24] 2025-11-26 23:44:44,861 | INFO     | . stage-out = 5 s
[2025-11-27 00:45:24] 2025-11-26 23:44:44,861 | INFO     | . log creation = 2 s
[2025-11-27 00:45:24] 2025-11-26 23:44:44,861 | INFO     | ..............................
[2025-11-27 00:45:24] 2025-11-26 23:44:44,920 | INFO     | PID=19763 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 00:45:24] 2025-11-26 23:44:44,920 | INFO     | .. there are 9 such processes running
[2025-11-27 00:45:24] 2025-11-26 23:44:45,021 | INFO     | 
[2025-11-27 00:45:24] 2025-11-26 23:44:45,022 | INFO     | job summary report
[2025-11-27 00:45:24] 2025-11-26 23:44:45,022 | INFO     | --------------------------------------------------
[2025-11-27 00:45:24] 2025-11-26 23:44:45,022 | INFO     | PanDA job id: 6895350258
[2025-11-27 00:45:24] 2025-11-26 23:44:45,022 | INFO     | task id: 47556137
[2025-11-27 00:45:24] 2025-11-26 23:44:45,023 | INFO     | errors: (none)
[2025-11-27 00:45:24] 2025-11-26 23:44:45,023 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 00:45:24] 2025-11-26 23:44:45,023 | INFO     | pilot state: finished 
[2025-11-27 00:45:24] 2025-11-26 23:44:45,023 | INFO     | transexitcode: 0
[2025-11-27 00:45:24] 2025-11-26 23:44:45,023 | INFO     | exeerrorcode: 0
[2025-11-27 00:45:24] 2025-11-26 23:44:45,023 | INFO     | exeerrordiag: 
[2025-11-27 00:45:24] 2025-11-26 23:44:45,023 | INFO     | exitcode: 0
[2025-11-27 00:45:24] 2025-11-26 23:44:45,024 | INFO     | exitmsg: OK
[2025-11-27 00:45:24] 2025-11-26 23:44:45,024 | INFO     | cpuconsumptiontime: 327852 s
[2025-11-27 00:45:24] 2025-11-26 23:44:45,024 | INFO     | nevents: 1000
[2025-11-27 00:45:24] 2025-11-26 23:44:45,024 | INFO     | neventsw: 0
[2025-11-27 00:45:24] 2025-11-26 23:44:45,024 | INFO     | pid: 26277
[2025-11-27 00:45:24] 2025-11-26 23:44:45,024 | INFO     | pgrp: 26277
[2025-11-27 00:45:24] 2025-11-26 23:44:45,024 | INFO     | corecount: 8
[2025-11-27 00:45:24] 2025-11-26 23:44:45,024 | INFO     | event service: False
[2025-11-27 00:45:24] 2025-11-26 23:44:45,024 | INFO     | sizes: {0: 2284088, 1: 2284287, 9: 2284549, 12: 2284577, 86520: 2345927, 86525: 2354923, 86527: 2355107, 86621: 2355353}
[2025-11-27 00:45:24] 2025-11-26 23:44:45,025 | INFO     | --------------------------------------------------
[2025-11-27 00:45:24] 2025-11-26 23:44:45,025 | INFO     | 
[2025-11-27 00:45:24] 2025-11-26 23:44:45,025 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-11-27 00:45:24] 2025-11-26 23:44:45,634 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 00:45:24] 2025-11-26 23:44:45,634 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 00:45:24] 2025-11-26 23:44:45,634 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 00:45:24] 2025-11-26 23:44:45,635 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 00:45:24] 2025-11-26 23:44:45,635 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 00:45:24] 2025-11-26 23:44:45,635 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 00:45:24] 2025-11-26 23:44:45,635 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 00:45:24] 2025-11-26 23:44:45,635 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 00:45:24] 2025-11-26 23:44:45,635 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 00:45:24] 2025-11-26 23:44:45,635 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 00:45:24] 2025-11-26 23:44:45,635 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 00:45:24] 2025-11-26 23:44:45,635 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 00:45:24] 2025-11-26 23:44:45,635 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 00:45:24] 2025-11-26 23:44:45,635 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 00:45:24] 2025-11-26 23:44:45,636 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 00:45:24] 2025-11-26 23:44:45,636 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 00:45:24] 2025-11-26 23:44:45,636 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 00:45:24] 2025-11-26 23:44:45,636 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 00:45:24] 2025-11-26 23:44:45,636 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 00:45:24] 2025-11-26 23:44:45,636 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 00:45:24] 2025-11-26 23:44:45,636 | INFO     | job 6895350258 has completed (purged errors)
[2025-11-27 00:45:24] 2025-11-26 23:44:45,636 | INFO     | overall cleanup function is called
[2025-11-27 00:45:24] 2025-11-26 23:44:46,655 | INFO     | --- collectZombieJob: --- 10, [26277]
[2025-11-27 00:45:24] 2025-11-26 23:44:46,656 | INFO     | zombie collector waiting for pid 26277
[2025-11-27 00:45:24] 2025-11-26 23:44:46,656 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 00:45:24] 2025-11-26 23:44:46,656 | INFO     | collected zombie processes
[2025-11-27 00:45:24] 2025-11-26 23:44:46,656 | INFO     | will attempt to kill all subprocesses of pid=26277
[2025-11-27 00:45:24] 2025-11-26 23:44:46,768 | INFO     | process IDs to be killed: [26277] (in reverse order)
[2025-11-27 00:45:24] 2025-11-26 23:44:47,698 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 00:45:24] 2025-11-26 23:44:47,698 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 00:45:24] 2025-11-26 23:44:47,701 | INFO     | did not find any defunct processes belonging to 26277
[2025-11-27 00:45:24] 2025-11-26 23:44:47,704 | INFO     | did not find any defunct processes belonging to 26277
[2025-11-27 00:45:24] 2025-11-26 23:44:47,762 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 00:45:24] 2025-11-26 23:44:47,762 | INFO     | ready for new job
[2025-11-27 00:45:24] 2025-11-26 23:44:47,762 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 00:45:24] 2025-11-26 23:44:47,767 | INFO     | ***************************************
[2025-11-27 00:45:24] 2025-11-26 23:44:47,767 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 00:45:24] 2025-11-26 23:44:47,767 | INFO     | ***************************************
[2025-11-27 00:45:24] 2025-11-26 23:44:47,767 | INFO     | 
[2025-11-27 00:45:24] 2025-11-26 23:44:47,768 | INFO     | pilot is running in a VM
[2025-11-27 00:45:24] 2025-11-26 23:44:47,768 | INFO     | architecture information:
[2025-11-27 00:45:24] 2025-11-26 23:44:47,776 | INFO     | executing command: cat /etc/os-release
[2025-11-27 00:45:24] 2025-11-26 23:44:47,915 | INFO     | cat /etc/os-release:
[2025-11-27 00:45:24] NAME="CentOS Linux"
[2025-11-27 00:45:24] VERSION="7 (Core)"
[2025-11-27 00:45:24] ID="centos"
[2025-11-27 00:45:24] ID_LIKE="rhel fedora"
[2025-11-27 00:45:24] VERSION_ID="7"
[2025-11-27 00:45:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 00:45:24] ANSI_COLOR="0;31"
[2025-11-27 00:45:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 00:45:24] HOME_URL="https://www.centos.org/"
[2025-11-27 00:45:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 00:45:24] 
[2025-11-27 00:45:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 00:45:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 00:45:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 00:45:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 00:45:24] 
[2025-11-27 00:45:24] 2025-11-26 23:44:47,916 | INFO     | ***************************************
[2025-11-27 00:45:24] 2025-11-26 23:44:48,420 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-11-27 00:45:24] 2025-11-26 23:44:48,696 | INFO     | sufficient remaining disk space (495205744640 B)
[2025-11-27 00:45:24] 2025-11-26 23:44:48,696 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 00:45:24] 2025-11-26 23:44:48,697 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 00:45:24] 2025-11-26 23:44:48,697 | INFO     | update_server=False
[2025-11-27 00:45:24] 2025-11-26 23:44:48,697 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 00:45:24] 2025-11-26 23:44:48,697 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 00:45:24] 2025-11-26 23:44:48,702 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:45:24] 2025-11-26 23:44:48,702 | INFO     | aborting loop
[2025-11-27 00:45:24] 2025-11-26 23:44:49,365 | INFO     | all data control threads have been joined
[2025-11-27 00:45:24] 2025-11-26 23:44:49,494 | INFO     | all payload control threads have been joined
[2025-11-27 00:45:24] 2025-11-26 23:44:49,702 | INFO     | [job] retrieve thread has finished
[2025-11-27 00:45:24] 2025-11-26 23:44:49,708 | INFO     | [job] job monitor thread has finished
[2025-11-27 00:45:24] 2025-11-26 23:44:49,745 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 00:45:24] 2025-11-26 23:44:49,858 | INFO     | all job control threads have been joined
[2025-11-27 00:45:24] 2025-11-26 23:44:50,035 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:45:24] 2025-11-26 23:44:50,046 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 00:45:24] 2025-11-26 23:44:50,275 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 00:45:24] 2025-11-26 23:44:50,282 | INFO     | [payload] failed_post thread has finished
[2025-11-27 00:45:24] 2025-11-26 23:44:50,290 | INFO     | [job] validate thread has finished
[2025-11-27 00:45:24] 2025-11-26 23:44:50,371 | INFO     | [data] control thread has finished
[2025-11-27 00:45:24] 2025-11-26 23:44:50,500 | INFO     | [payload] control thread has finished
[2025-11-27 00:45:24] 2025-11-26 23:44:50,505 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 00:45:24] 2025-11-26 23:44:50,619 | INFO     | [data] copytool_in thread has finished
[2025-11-27 00:45:24] 2025-11-26 23:44:50,704 | INFO     | [data] copytool_out thread has finished
[2025-11-27 00:45:24] 2025-11-26 23:44:50,864 | INFO     | [job] control thread has finished
[2025-11-27 00:45:24] 2025-11-26 23:44:51,041 | INFO     | [job] queue monitor thread has finished
[2025-11-27 00:45:24] 2025-11-26 23:44:51,219 | INFO     | [payload] validate_post thread has finished
[2025-11-27 00:45:24] 2025-11-26 23:44:52,124 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 00:45:24] 2025-11-26 23:44:56,133 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 00:45:24] 2025-11-26 23:45:14,165 | INFO     | [monitor] cgroup control has ended
[2025-11-27 00:45:24] 2025-11-26 23:45:15,748 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140224031209280)>', '<ExcThread(monitor, started 140223300237056)>']
[2025-11-27 00:45:24] 2025-11-26 23:45:17,070 | INFO     | PID=19763 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 00:45:24] 2025-11-26 23:45:17,070 | INFO     | .. there are 9 such processes running
[2025-11-27 00:45:24] 2025-11-26 23:45:17,070 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 00:45:24] 2025-11-26 23:45:17,070 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 00:45:24] 2025-11-26 23:45:17,070 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 00:45:24] 2025-11-26 23:45:17,070 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 00:45:24] 2025-11-26 23:45:17,071 | INFO     | [monitor] control thread has ended
[2025-11-27 00:45:24] 2025-11-26 23:45:20,774 | INFO     | all workflow threads have been joined
[2025-11-27 00:45:24] 2025-11-26 23:45:20,775 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 00:45:24] 2025-11-26 23:45:20,775 | INFO     | traces error code: 0
[2025-11-27 00:45:24] 2025-11-26 23:45:20,775 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 00:45:24] 2025-11-26 23:45:21,006 [wrapper] ==== pilot stdout END ====
[2025-11-27 00:45:24] 2025-11-26 23:45:21,035 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 00:45:24] 2025-11-26 23:45:21,060 [wrapper] pilotpid: 19763
[2025-11-27 00:45:24] 2025-11-26 23:45:21,069 [wrapper] Pilot exit status: 0
[2025-11-27 00:45:24] 2025-11-26 23:45:21,452 [wrapper] pandaids: 6895350258
[2025-11-27 00:45:24] 2025-11-26 23:45:22,134 [wrapper] cleanup supervisor_pilot 24644 19764
[2025-11-27 00:45:24] 2025-11-26 23:45:22,148 [wrapper] Test setup, not cleaning
[2025-11-27 00:45:24] 2025-11-26 23:45:22,151 [wrapper] apfmon messages muted
[2025-11-27 00:45:24] 2025-11-26 23:45:22,165 [wrapper] ==== wrapper stdout END ====
[2025-11-27 00:45:24] 2025-11-26 23:45:22,183 [wrapper] ==== wrapper stderr END ====
[2025-11-27 00:45:24]  *** Error codes and diagnostics ***
[2025-11-27 00:45:24]     "exeErrorCode": 0,
[2025-11-27 00:45:24]     "exeErrorDiag": "",
[2025-11-27 00:45:24]     "pilotErrorCode": 0,
[2025-11-27 00:45:24]     "pilotErrorDiag": "",
[2025-11-27 00:45:24]  *** Listing of results directory ***
[2025-11-27 00:45:24] total 1318388
[2025-11-27 00:45:24] -rw-r--r--. 1 boinc boinc    576529 Nov 22 21:41 pilot3.tar.gz
[2025-11-27 00:45:24] -rwx------. 1 boinc boinc     36292 Nov 22 21:47 runpilot2-wrapper.sh
[2025-11-27 00:45:24] -rw-r--r--. 1 boinc boinc      5112 Nov 22 21:47 queuedata.json
[2025-11-27 00:45:24] -rw-r--r--. 1 boinc boinc       100 Nov 26 00:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 00:45:24] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 00:40 run_atlas
[2025-11-27 00:45:24] -rw-r--r--. 1 boinc boinc       105 Nov 26 00:40 job.xml
[2025-11-27 00:45:24] -rw-r--r--. 1 boinc boinc      6393 Nov 26 00:40 init_data.xml
[2025-11-27 00:45:24] -rw-r--r--. 2 boinc boinc 408834607 Nov 26 00:40 EVNT.47483658._000502.pool.root.1
[2025-11-27 00:45:24] -rw-r--r--. 2 boinc boinc     15847 Nov 26 00:40 start_atlas.sh
[2025-11-27 00:45:24] drwxrwx--x. 2 boinc boinc        68 Nov 26 00:40 shared
[2025-11-27 00:45:24] -rw-r--r--. 2 boinc boinc    590103 Nov 26 00:40 input.tar.gz
[2025-11-27 00:45:24] -rw-r--r--. 1 boinc boinc         0 Nov 26 00:40 boinc_lockfile
[2025-11-27 00:45:24] -rw-r--r--. 1 boinc boinc      2782 Nov 26 00:40 pandaJob.out
[2025-11-27 00:45:24] -rw-------. 1 boinc boinc    991877 Nov 26 00:40 agis_schedconf.cvmfs.json
[2025-11-27 00:45:24] drwx------. 5 boinc boinc      4096 Nov 26 00:40 pilot3
[2025-11-27 00:45:24] -rw-r--r--. 1 boinc boinc       533 Nov 27 00:17 boinc_task_state.xml
[2025-11-27 00:45:24] -rw-------. 1 boinc boinc 909274728 Nov 27 00:41 HITS.47556137._004971.pool.root.1
[2025-11-27 00:45:24] -rw-------. 1 boinc boinc      1031 Nov 27 00:43 memory_monitor_summary.json
[2025-11-27 00:45:24] -rw-------. 1 boinc boinc   1516240 Nov 27 00:43 agis_ddmendpoints.agis.ALL.json
[2025-11-27 00:45:24] -rw-------. 1 boinc boinc   2479767 Nov 27 00:43 log.47556137._004971.job.log.tgz.1
[2025-11-27 00:45:24] -rw-------. 1 boinc boinc        95 Nov 27 00:44 pilot_heartbeat.json
[2025-11-27 00:45:24] -rw-------. 1 boinc boinc      8617 Nov 27 00:44 heartbeat.json
[2025-11-27 00:45:24] -rw-r--r--. 1 boinc boinc        29 Nov 27 00:45 wrapper_checkpoint.txt
[2025-11-27 00:45:24] -rw-r--r--. 1 boinc boinc      8192 Nov 27 00:45 boinc_mmap_file
[2025-11-27 00:45:24] -rw-------. 1 boinc boinc      4885 Nov 27 00:45 pilotlog.txt
[2025-11-27 00:45:24] -rw-------. 1 boinc boinc  11524847 Nov 27 00:45 log.47556137._004971.job.log.1
[2025-11-27 00:45:24] -rw-------. 1 boinc boinc       353 Nov 27 00:45 output.list
[2025-11-27 00:45:24] -rw-r--r--. 1 boinc boinc       620 Nov 27 00:45 runtime_log
[2025-11-27 00:45:24] -rw-------. 1 boinc boinc  14028800 Nov 27 00:45 result.tar.gz
[2025-11-27 00:45:24] -rw-r--r--. 1 boinc boinc      8833 Nov 27 00:45 runtime_log.err
[2025-11-27 00:45:24] -rw-------. 1 boinc boinc       662 Nov 27 00:45 o5YMDmqg9g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmsOKKDmQKhXPn.diag
[2025-11-27 00:45:24] -rw-r--r--. 1 boinc boinc     21467 Nov 27 00:45 stderr.txt
[2025-11-27 00:45:24] HITS file was successfully produced:
[2025-11-27 00:45:25] -rw-------. 1 boinc boinc 909274728 Nov 27 00:41 shared/HITS.pool.root.1
[2025-11-27 00:45:25]  *** Contents of shared directory: ***
[2025-11-27 00:45:25] total 1301516
[2025-11-27 00:45:25] -rw-r--r--. 2 boinc boinc 408834607 Nov 26 00:40 ATLAS.root_0
[2025-11-27 00:45:25] -rw-r--r--. 2 boinc boinc     15847 Nov 26 00:40 start_atlas.sh
[2025-11-27 00:45:25] -rw-r--r--. 2 boinc boinc    590103 Nov 26 00:40 input.tar.gz
[2025-11-27 00:45:25] -rw-------. 1 boinc boinc 909274728 Nov 27 00:41 HITS.pool.root.1
[2025-11-27 00:45:25] -rw-------. 1 boinc boinc  14028800 Nov 27 00:45 result.tar.gz
00:45:26 (16061): run_atlas exited; CPU time 328490.953553
00:45:26 (16061): called boinc_finish(0)

</stderr_txt>
]]>

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