Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:22:08 (7938): wrapper (7.7.26015): starting
23:22:08 (7938): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 23:22:08] Arguments: --nthreads 8
[2025-11-25 23:22:08] Threads: 8
[2025-11-25 23:22:08] Checking for CVMFS
[2025-11-25 23:22:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 23:22:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 23:22:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 23:22:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 23:22:11] 2.11.2.0 2602 78969 97032 153300 2 75 15441646 25165825 4632 130560 11 23587889 99.880 13841030 2002 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 23:22:11] CVMFS is ok
[2025-11-25 23:22:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 23:22:11] Checking for apptainer binary...
[2025-11-25 23:22:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 23:22:11] Running /usr/bin/apptainer --version
[2025-11-25 23:22:11] apptainer version 1.3.2-1.el7
[2025-11-25 23:22:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 23:22:15] cg-vwn253.simple-grid.lan
[2025-11-25 23:22:15] apptainer works
[2025-11-25 23:22:15] Set ATHENA_PROC_NUMBER=8
[2025-11-25 23:22:15] Set ATHENA_CORE_NUMBER=8
[2025-11-25 23:22:16] Starting ATLAS job with PandaID=6895350160
[2025-11-25 23:22:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 23:32:24]  *** The last 200 lines of the pilot log: ***
[2025-11-26 23:32:24] 2025-11-26 22:31:01,757 | INFO     | time since job start (86719s) is within the limit (172800.0s)
[2025-11-26 23:32:24] 2025-11-26 22:31:02,993 | INFO     | PID=11696 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 23:32:24] 2025-11-26 22:31:02,993 | INFO     | .. there are 9 such processes running
[2025-11-26 23:32:24] 2025-11-26 22:31:03,214 | INFO     | monitor loop #5845: job 0:6895350160 is in state 'finished'
[2025-11-26 23:32:24] 2025-11-26 22:31:03,215 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:32:24] 2025-11-26 22:31:03,993 | INFO     | time since job start (86721s) is within the limit (172800.0s)
[2025-11-26 23:32:24] 2025-11-26 22:31:05,719 | INFO     | monitor loop #5846: job 0:6895350160 is in state 'finished'
[2025-11-26 23:32:24] 2025-11-26 22:31:05,720 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:32:24] 2025-11-26 22:31:06,000 | INFO     | time since job start (86724s) is within the limit (172800.0s)
[2025-11-26 23:32:24] 2025-11-26 22:31:08,014 | INFO     | time since job start (86726s) is within the limit (172800.0s)
[2025-11-26 23:32:24] 2025-11-26 22:31:08,225 | INFO     | monitor loop #5847: job 0:6895350160 is in state 'finished'
[2025-11-26 23:32:24] 2025-11-26 22:31:08,226 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:32:24] 2025-11-26 22:31:10,021 | INFO     | time since job start (86728s) is within the limit (172800.0s)
[2025-11-26 23:32:24] 2025-11-26 22:31:10,735 | INFO     | monitor loop #5848: job 0:6895350160 is in state 'finished'
[2025-11-26 23:32:24] 2025-11-26 22:31:10,736 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:32:24] 2025-11-26 22:31:11,899 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 23:32:24] 2025-11-26 22:31:11,900 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 23:32:24] 2025-11-26 22:31:11,902 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6895350160/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 23:32:24] 2025-11-26 22:31:11,902 | INFO     | extracted standard info from prmon json
[2025-11-26 23:32:24] 2025-11-26 22:31:11,902 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 23:32:24] 2025-11-26 22:31:11,903 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 23:32:24] 2025-11-26 22:31:11,940 | INFO     | fitting pss+swap vs Time
[2025-11-26 23:32:24] 2025-11-26 22:31:11,942 | INFO     | sum of square deviations: 872933329548.7195
[2025-11-26 23:32:24] 2025-11-26 22:31:12,024 | INFO     | sum of deviations: 3509981903602.635
[2025-11-26 23:32:24] 2025-11-26 22:31:12,024 | INFO     | mean x: 1764153108.6005666
[2025-11-26 23:32:24] 2025-11-26 22:31:12,024 | INFO     | mean y: 2844053.6997167137
[2025-11-26 23:32:24] 2025-11-26 22:31:12,024 | INFO     | intersect: -7090647827.94659
[2025-11-26 23:32:24] 2025-11-26 22:31:12,026 | INFO     | chi2: 21.305327797084296
[2025-11-26 23:32:24] 2025-11-26 22:31:12,028 | INFO     | sum of square deviations: 863693202347.642
[2025-11-26 23:32:24] 2025-11-26 22:31:12,050 | INFO     | time since job start (86730s) is within the limit (172800.0s)
[2025-11-26 23:32:24] 2025-11-26 22:31:12,102 | INFO     | sum of deviations: 3979627554669.555
[2025-11-26 23:32:24] 2025-11-26 22:31:12,102 | INFO     | mean x: 1764152956.1044776
[2025-11-26 23:32:24] 2025-11-26 22:31:12,102 | INFO     | mean y: 2851803.4520255863
[2025-11-26 23:32:24] 2025-11-26 22:31:12,102 | INFO     | intersect: -8125812050.427959
[2025-11-26 23:32:24] 2025-11-26 22:31:12,104 | INFO     | chi2: 18.089378708556243
[2025-11-26 23:32:24] 2025-11-26 22:31:12,104 | INFO     | current chi2=18.089378708556243 (change=15.094576901877875 %)
[2025-11-26 23:32:24] 2025-11-26 22:31:12,104 | INFO     | right removable region: 1406
[2025-11-26 23:32:24] 2025-11-26 22:31:12,106 | INFO     | sum of square deviations: 863692254407.6411
[2025-11-26 23:32:24] 2025-11-26 22:31:12,160 | INFO     | sum of deviations: 2927765300740.9004
[2025-11-26 23:32:24] 2025-11-26 22:31:12,161 | INFO     | mean x: 1764153261.1044776
[2025-11-26 23:32:24] 2025-11-26 22:31:12,161 | INFO     | mean y: 2853661.04832978
[2025-11-26 23:32:24] 2025-11-26 22:31:12,161 | INFO     | intersect: -5977316563.579885
[2025-11-26 23:32:24] 2025-11-26 22:31:12,163 | INFO     | chi2: 16.76814913032294
[2025-11-26 23:32:24] 2025-11-26 22:31:12,163 | INFO     | current chi2=16.76814913032294 (change=21.29598150272198 %)
[2025-11-26 23:32:24] 2025-11-26 22:31:12,163 | INFO     | left removable region: 10
[2025-11-26 23:32:24] 2025-11-26 22:31:12,165 | INFO     | sum of square deviations: 843593058845.1173
[2025-11-26 23:32:24] 2025-11-26 22:31:12,234 | INFO     | sum of deviations: 2987322004224.1416
[2025-11-26 23:32:24] 2025-11-26 22:31:12,234 | INFO     | mean x: 1764153230.6131804
[2025-11-26 23:32:24] 2025-11-26 22:31:12,235 | INFO     | mean y: 2871829.3187679085
[2025-11-26 23:32:24] 2025-11-26 22:31:12,235 | INFO     | intersect: -6244327231.148423
[2025-11-26 23:32:24] 2025-11-26 22:31:12,236 | INFO     | chi2: 9.302029207202091
[2025-11-26 23:32:24] 2025-11-26 22:31:12,237 | INFO     | current memory leak: 3.54 B/s (using 1396 data points, chi2=9.30)
[2025-11-26 23:32:24] 2025-11-26 22:31:12,238 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-11-26 23:32:24] 2025-11-26 22:31:12,238 | INFO     | ..............................
[2025-11-26 23:32:24] 2025-11-26 22:31:12,238 | INFO     | . Timing measurements:
[2025-11-26 23:32:24] 2025-11-26 22:31:12,238 | INFO     | . get job = 0 s
[2025-11-26 23:32:24] 2025-11-26 22:31:12,238 | INFO     | . initial setup = 7 s
[2025-11-26 23:32:24] 2025-11-26 22:31:12,238 | INFO     | . payload setup = 169 s
[2025-11-26 23:32:24] 2025-11-26 22:31:12,238 | INFO     | . stage-in = 0 s
[2025-11-26 23:32:24] 2025-11-26 22:31:12,238 | INFO     | . payload execution = 86247 s
[2025-11-26 23:32:24] 2025-11-26 22:31:12,239 | INFO     | . stage-out = 5 s
[2025-11-26 23:32:24] 2025-11-26 22:31:12,239 | INFO     | . log creation = 2 s
[2025-11-26 23:32:24] 2025-11-26 22:31:12,239 | INFO     | ..............................
[2025-11-26 23:32:24] 2025-11-26 22:31:12,370 | INFO     | 
[2025-11-26 23:32:24] 2025-11-26 22:31:12,371 | INFO     | job summary report
[2025-11-26 23:32:24] 2025-11-26 22:31:12,371 | INFO     | --------------------------------------------------
[2025-11-26 23:32:24] 2025-11-26 22:31:12,371 | INFO     | PanDA job id: 6895350160
[2025-11-26 23:32:24] 2025-11-26 22:31:12,371 | INFO     | task id: 47556137
[2025-11-26 23:32:24] 2025-11-26 22:31:12,371 | INFO     | errors: (none)
[2025-11-26 23:32:24] 2025-11-26 22:31:12,371 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 23:32:24] 2025-11-26 22:31:12,371 | INFO     | pilot state: finished 
[2025-11-26 23:32:24] 2025-11-26 22:31:12,371 | INFO     | transexitcode: 0
[2025-11-26 23:32:24] 2025-11-26 22:31:12,371 | INFO     | exeerrorcode: 0
[2025-11-26 23:32:24] 2025-11-26 22:31:12,371 | INFO     | exeerrordiag: 
[2025-11-26 23:32:24] 2025-11-26 22:31:12,372 | INFO     | exitcode: 0
[2025-11-26 23:32:24] 2025-11-26 22:31:12,372 | INFO     | exitmsg: OK
[2025-11-26 23:32:24] 2025-11-26 22:31:12,372 | INFO     | cpuconsumptiontime: 324761 s
[2025-11-26 23:32:24] 2025-11-26 22:31:12,372 | INFO     | nevents: 1000
[2025-11-26 23:32:24] 2025-11-26 22:31:12,372 | INFO     | neventsw: 0
[2025-11-26 23:32:24] 2025-11-26 22:31:12,372 | INFO     | pid: 18292
[2025-11-26 23:32:24] 2025-11-26 22:31:12,372 | INFO     | pgrp: 18292
[2025-11-26 23:32:24] 2025-11-26 22:31:12,372 | INFO     | corecount: 8
[2025-11-26 23:32:24] 2025-11-26 22:31:12,373 | INFO     | event service: False
[2025-11-26 23:32:24] 2025-11-26 22:31:12,373 | INFO     | sizes: {0: 2284093, 1: 2284292, 11: 2284292, 22: 2284320, 33: 2284348, 44: 2284404, 54: 2284560, 65: 2284588, 76: 2284616, 87: 2284672, 97: 2284700, 99: 2285270, 1
[2025-11-26 23:32:24] 2025-11-26 22:31:12,373 | INFO     | --------------------------------------------------
[2025-11-26 23:32:24] 2025-11-26 22:31:12,373 | INFO     | 
[2025-11-26 23:32:24] 2025-11-26 22:31:12,373 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-26 23:32:24] 2025-11-26 22:31:12,789 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 23:32:24] 2025-11-26 22:31:12,789 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 23:32:24] 2025-11-26 22:31:12,796 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 23:32:24] 2025-11-26 22:31:12,796 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 23:32:24] 2025-11-26 22:31:12,796 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 23:32:24] 2025-11-26 22:31:12,797 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 23:32:24] 2025-11-26 22:31:12,797 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 23:32:24] 2025-11-26 22:31:12,797 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 23:32:24] 2025-11-26 22:31:12,797 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 23:32:24] 2025-11-26 22:31:12,797 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 23:32:24] 2025-11-26 22:31:12,797 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 23:32:24] 2025-11-26 22:31:12,797 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 23:32:24] 2025-11-26 22:31:12,797 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 23:32:24] 2025-11-26 22:31:12,797 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 23:32:24] 2025-11-26 22:31:12,797 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 23:32:24] 2025-11-26 22:31:12,798 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 23:32:24] 2025-11-26 22:31:12,798 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 23:32:24] 2025-11-26 22:31:12,798 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 23:32:24] 2025-11-26 22:31:12,798 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 23:32:24] 2025-11-26 22:31:12,798 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 23:32:24] 2025-11-26 22:31:12,798 | INFO     | job 6895350160 has completed (purged errors)
[2025-11-26 23:32:24] 2025-11-26 22:31:12,798 | INFO     | overall cleanup function is called
[2025-11-26 23:32:24] 2025-11-26 22:31:13,814 | INFO     | --- collectZombieJob: --- 10, [18292]
[2025-11-26 23:32:24] 2025-11-26 22:31:13,814 | INFO     | zombie collector waiting for pid 18292
[2025-11-26 23:32:24] 2025-11-26 22:31:13,815 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 23:32:24] 2025-11-26 22:31:13,815 | INFO     | collected zombie processes
[2025-11-26 23:32:24] 2025-11-26 22:31:13,815 | INFO     | will attempt to kill all subprocesses of pid=18292
[2025-11-26 23:32:24] 2025-11-26 22:31:13,936 | INFO     | process IDs to be killed: [18292] (in reverse order)
[2025-11-26 23:32:24] 2025-11-26 22:31:14,639 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 23:32:24] 2025-11-26 22:31:14,639 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 23:32:24] 2025-11-26 22:31:14,642 | INFO     | did not find any defunct processes belonging to 18292
[2025-11-26 23:32:24] 2025-11-26 22:31:14,644 | INFO     | did not find any defunct processes belonging to 18292
[2025-11-26 23:32:24] 2025-11-26 22:31:14,698 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 23:32:24] 2025-11-26 22:31:14,699 | INFO     | ready for new job
[2025-11-26 23:32:24] 2025-11-26 22:31:14,699 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 23:32:24] 2025-11-26 22:31:14,704 | INFO     | ***************************************
[2025-11-26 23:32:24] 2025-11-26 22:31:14,704 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 23:32:24] 2025-11-26 22:31:14,704 | INFO     | ***************************************
[2025-11-26 23:32:24] 2025-11-26 22:31:14,704 | INFO     | 
[2025-11-26 23:32:24] 2025-11-26 22:31:14,705 | INFO     | pilot is running in a VM
[2025-11-26 23:32:24] 2025-11-26 22:31:14,705 | INFO     | architecture information:
[2025-11-26 23:32:24] 2025-11-26 22:31:14,717 | INFO     | executing command: cat /etc/os-release
[2025-11-26 23:32:24] 2025-11-26 22:31:15,003 | INFO     | cat /etc/os-release:
[2025-11-26 23:32:24] NAME="CentOS Linux"
[2025-11-26 23:32:24] VERSION="7 (Core)"
[2025-11-26 23:32:24] ID="centos"
[2025-11-26 23:32:24] ID_LIKE="rhel fedora"
[2025-11-26 23:32:24] VERSION_ID="7"
[2025-11-26 23:32:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 23:32:24] ANSI_COLOR="0;31"
[2025-11-26 23:32:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 23:32:24] HOME_URL="https://www.centos.org/"
[2025-11-26 23:32:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 23:32:24] 
[2025-11-26 23:32:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 23:32:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 23:32:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 23:32:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 23:32:24] 
[2025-11-26 23:32:24] 2025-11-26 22:31:15,003 | INFO     | ***************************************
[2025-11-26 23:32:24] 2025-11-26 22:31:15,507 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-26 23:32:24] 2025-11-26 22:31:15,805 | INFO     | sufficient remaining disk space (495393439744 B)
[2025-11-26 23:32:24] 2025-11-26 22:31:15,805 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 23:32:24] 2025-11-26 22:31:15,805 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 23:32:24] 2025-11-26 22:31:15,806 | INFO     | update_server=False
[2025-11-26 23:32:24] 2025-11-26 22:31:15,806 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 23:32:24] 2025-11-26 22:31:15,807 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 23:32:24] 2025-11-26 22:31:16,220 | INFO     | all data control threads have been joined
[2025-11-26 23:32:24] 2025-11-26 22:31:16,760 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:32:24] 2025-11-26 22:31:16,761 | INFO     | aborting loop
[2025-11-26 23:32:24] 2025-11-26 22:31:16,812 | INFO     | [job] retrieve thread has finished
[2025-11-26 23:32:24] 2025-11-26 22:31:16,869 | INFO     | all job control threads have been joined
[2025-11-26 23:32:24] 2025-11-26 22:31:17,013 | INFO     | all payload control threads have been joined
[2025-11-26 23:32:24] 2025-11-26 22:31:17,107 | INFO     | [payload] validate_post thread has finished
[2025-11-26 23:32:24] 2025-11-26 22:31:17,226 | INFO     | [data] control thread has finished
[2025-11-26 23:32:24] 2025-11-26 22:31:17,283 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 23:32:24] 2025-11-26 22:31:17,295 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 23:32:24] 2025-11-26 22:31:17,309 | INFO     | [job] validate thread has finished
[2025-11-26 23:32:24] 2025-11-26 22:31:17,387 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:32:24] 2025-11-26 22:31:17,399 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 23:32:24] 2025-11-26 22:31:17,536 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 23:32:24] 2025-11-26 22:31:17,766 | INFO     | [job] job monitor thread has finished
[2025-11-26 23:32:24] 2025-11-26 22:31:17,787 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 23:32:24] 2025-11-26 22:31:17,814 | INFO     | [data] copytool_out thread has finished
[2025-11-26 23:32:24] 2025-11-26 22:31:17,875 | INFO     | [job] control thread has finished
[2025-11-26 23:32:24] 2025-11-26 22:31:18,019 | INFO     | [payload] control thread has finished
[2025-11-26 23:32:24] 2025-11-26 22:31:18,199 | INFO     | [payload] failed_post thread has finished
[2025-11-26 23:32:24] 2025-11-26 22:31:18,267 | INFO     | [data] copytool_in thread has finished
[2025-11-26 23:32:24] 2025-11-26 22:31:18,393 | INFO     | [job] queue monitor thread has finished
[2025-11-26 23:32:24] 2025-11-26 22:31:21,796 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 23:32:24] 2025-11-26 22:31:45,265 | INFO     | PID=11696 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 23:32:24] 2025-11-26 22:31:45,265 | INFO     | .. there are 9 such processes running
[2025-11-26 23:32:24] 2025-11-26 22:31:45,267 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 23:32:24] 2025-11-26 22:31:45,267 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 23:32:24] 2025-11-26 22:31:45,267 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 23:32:24] 2025-11-26 22:32:12,947 | INFO     | [monitor] cgroup control has ended
[2025-11-26 23:32:24] 2025-11-26 22:32:14,753 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139687632787264)>', '<ExcThread(monitor, started 139686831978240)>']
[2025-11-26 23:32:24] 2025-11-26 22:32:15,443 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 23:32:24] 2025-11-26 22:32:15,443 | INFO     | [monitor] control thread has ended
[2025-11-26 23:32:24] 2025-11-26 22:32:19,779 | INFO     | all workflow threads have been joined
[2025-11-26 23:32:24] 2025-11-26 22:32:19,780 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 23:32:24] 2025-11-26 22:32:19,780 | INFO     | traces error code: 0
[2025-11-26 23:32:24] 2025-11-26 22:32:19,780 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 23:32:24] 2025-11-26 22:32:20,078 [wrapper] ==== pilot stdout END ====
[2025-11-26 23:32:24] 2025-11-26 22:32:20,176 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 23:32:24] 2025-11-26 22:32:20,259 [wrapper] pilotpid: 11696
[2025-11-26 23:32:24] 2025-11-26 22:32:20,309 [wrapper] Pilot exit status: 0
[2025-11-26 23:32:24] 2025-11-26 22:32:20,717 [wrapper] pandaids: 6895350160
[2025-11-26 23:32:24] 2025-11-26 22:32:21,721 [wrapper] cleanup supervisor_pilot 16736 11697
[2025-11-26 23:32:24] 2025-11-26 22:32:21,840 [wrapper] Test setup, not cleaning
[2025-11-26 23:32:24] 2025-11-26 22:32:21,904 [wrapper] apfmon messages muted
[2025-11-26 23:32:24] 2025-11-26 22:32:22,008 [wrapper] ==== wrapper stdout END ====
[2025-11-26 23:32:24] 2025-11-26 22:32:22,117 [wrapper] ==== wrapper stderr END ====
[2025-11-26 23:32:24]  *** Error codes and diagnostics ***
[2025-11-26 23:32:24]     "exeErrorCode": 0,
[2025-11-26 23:32:24]     "exeErrorDiag": "",
[2025-11-26 23:32:24]     "pilotErrorCode": 0,
[2025-11-26 23:32:24]     "pilotErrorDiag": "",
[2025-11-26 23:32:25]  *** Listing of results directory ***
[2025-11-26 23:32:25] total 1337900
[2025-11-26 23:32:25] -rw-r--r--. 1 boinc boinc    576529 Nov 22 21:26 pilot3.tar.gz
[2025-11-26 23:32:25] -rwx------. 1 boinc boinc     36292 Nov 22 21:39 runpilot2-wrapper.sh
[2025-11-26 23:32:25] -rw-r--r--. 1 boinc boinc      5112 Nov 22 21:39 queuedata.json
[2025-11-26 23:32:25] -rw-r--r--. 1 boinc boinc       100 Nov 25 23:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 23:32:25] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 23:22 run_atlas
[2025-11-26 23:32:25] -rw-r--r--. 1 boinc boinc       105 Nov 25 23:22 job.xml
[2025-11-26 23:32:25] -rw-r--r--. 2 boinc boinc 409987501 Nov 25 23:22 EVNT.47483658._000497.pool.root.1
[2025-11-26 23:32:25] -rw-r--r--. 1 boinc boinc      6389 Nov 25 23:22 init_data.xml
[2025-11-26 23:32:25] -rw-r--r--. 2 boinc boinc     15847 Nov 25 23:22 start_atlas.sh
[2025-11-26 23:32:25] drwxrwx--x. 2 boinc boinc        68 Nov 25 23:22 shared
[2025-11-26 23:32:25] -rw-r--r--. 2 boinc boinc    590102 Nov 25 23:22 input.tar.gz
[2025-11-26 23:32:25] -rw-r--r--. 1 boinc boinc         0 Nov 25 23:22 boinc_lockfile
[2025-11-26 23:32:25] -rw-r--r--. 1 boinc boinc      2785 Nov 25 23:22 pandaJob.out
[2025-11-26 23:32:25] -rw-------. 1 boinc boinc    991877 Nov 25 23:25 agis_schedconf.cvmfs.json
[2025-11-26 23:32:25] drwx------. 5 boinc boinc      4096 Nov 25 23:25 pilot3
[2025-11-26 23:32:25] -rw-r--r--. 1 boinc boinc       533 Nov 26 23:07 boinc_task_state.xml
[2025-11-26 23:32:25] -rw-------. 1 boinc boinc 928041021 Nov 26 23:27 HITS.47556137._004928.pool.root.1
[2025-11-26 23:32:25] -rw-------. 1 boinc boinc      1031 Nov 26 23:29 memory_monitor_summary.json
[2025-11-26 23:32:25] -rw-------. 1 boinc boinc   1516240 Nov 26 23:29 agis_ddmendpoints.agis.ALL.json
[2025-11-26 23:32:25] -rw-------. 1 boinc boinc   2492766 Nov 26 23:29 log.47556137._004928.job.log.tgz.1
[2025-11-26 23:32:25] -rw-------. 1 boinc boinc      8640 Nov 26 23:31 heartbeat.json
[2025-11-26 23:32:25] -rw-------. 1 boinc boinc        95 Nov 26 23:31 pilot_heartbeat.json
[2025-11-26 23:32:25] -rw-r--r--. 1 boinc boinc      8192 Nov 26 23:32 boinc_mmap_file
[2025-11-26 23:32:25] -rw-r--r--. 1 boinc boinc        29 Nov 26 23:32 wrapper_checkpoint.txt
[2025-11-26 23:32:25] -rw-------. 1 boinc boinc      4884 Nov 26 23:32 pilotlog.txt
[2025-11-26 23:32:25] -rw-------. 1 boinc boinc  11543599 Nov 26 23:32 log.47556137._004928.job.log.1
[2025-11-26 23:32:25] -rw-------. 1 boinc boinc       353 Nov 26 23:32 output.list
[2025-11-26 23:32:25] -rw-r--r--. 1 boinc boinc       620 Nov 26 23:32 runtime_log
[2025-11-26 23:32:25] -rw-------. 1 boinc boinc  14059520 Nov 26 23:32 result.tar.gz
[2025-11-26 23:32:25] -rw-r--r--. 1 boinc boinc      8817 Nov 26 23:32 runtime_log.err
[2025-11-26 23:32:25] -rw-------. 1 boinc boinc       662 Nov 26 23:32 Jw8MDmtZ9g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCOKKDmZZ0AKm.diag
[2025-11-26 23:32:25] -rw-r--r--. 1 boinc boinc     21495 Nov 26 23:32 stderr.txt
[2025-11-26 23:32:25] HITS file was successfully produced:
[2025-11-26 23:32:25] -rw-------. 1 boinc boinc 928041021 Nov 26 23:27 shared/HITS.pool.root.1
[2025-11-26 23:32:25]  *** Contents of shared directory: ***
[2025-11-26 23:32:25] total 1321000
[2025-11-26 23:32:25] -rw-r--r--. 2 boinc boinc 409987501 Nov 25 23:22 ATLAS.root_0
[2025-11-26 23:32:25] -rw-r--r--. 2 boinc boinc     15847 Nov 25 23:22 start_atlas.sh
[2025-11-26 23:32:25] -rw-r--r--. 2 boinc boinc    590102 Nov 25 23:22 input.tar.gz
[2025-11-26 23:32:25] -rw-------. 1 boinc boinc 928041021 Nov 26 23:27 HITS.pool.root.1
[2025-11-26 23:32:25] -rw-------. 1 boinc boinc  14059520 Nov 26 23:32 result.tar.gz
23:32:26 (7938): run_atlas exited; CPU time 325346.006204
23:32:26 (7938): called boinc_finish(0)

</stderr_txt>
]]>

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