Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:57:24 (2590314): wrapper (7.7.26015): starting
01:57:24 (2590314): wrapper: running run_atlas (--nthreads 6)
[2025-11-24 01:57:24] Arguments: --nthreads 6
[2025-11-24 01:57:24] Threads: 6
[2025-11-24 01:57:24] Checking for CVMFS
[2025-11-24 01:57:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 01:57:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 01:57:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 01:57:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 01:57:24] 2.13.3.0 12099 7157 103472 153215 2 81 43061654 52428800 916 130560 0 9193035 99.939 516172 24 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2025-11-24 01:57:24] CVMFS is ok
[2025-11-24 01:57:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 01:57:24] Checking for apptainer binary...
[2025-11-24 01:57:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 01:57:24] Running /usr/bin/apptainer --version
[2025-11-24 01:57:24] apptainer version 1.4.4-1.el9
[2025-11-24 01:57:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 01:57:24] testio008
[2025-11-24 01:57:24] apptainer works
[2025-11-24 01:57:24] Set ATHENA_PROC_NUMBER=6
[2025-11-24 01:57:24] Set ATHENA_CORE_NUMBER=6
[2025-11-24 01:57:24] Starting ATLAS job with PandaID=6895331138
[2025-11-24 01:57:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 08:49:19]  *** The last 200 lines of the pilot log: ***
[2025-11-24 08:49:19] 2025-11-23 23:48:42,122 | INFO     | fitting pss+swap vs Time
[2025-11-24 08:49:19] 2025-11-23 23:48:42,122 | INFO     | sum of square deviations: 20446541505.0
[2025-11-24 08:49:19] 2025-11-23 23:48:42,123 | INFO     | sum of deviations: 406630301048.99994
[2025-11-24 08:49:19] 2025-11-23 23:48:42,124 | INFO     | mean x: 1763929362.5
[2025-11-24 08:49:19] 2025-11-23 23:48:42,124 | INFO     | mean y: 2597649.702970297
[2025-11-24 08:49:19] 2025-11-23 23:48:42,124 | INFO     | intersect: -35077522258.455826
[2025-11-24 08:49:19] 2025-11-23 23:48:42,124 | INFO     | chi2: 7.346480162487879
[2025-11-24 08:49:19] 2025-11-23 23:48:42,124 | INFO     | sum of square deviations: 19696741400.0
[2025-11-24 08:49:19] 2025-11-23 23:48:42,125 | INFO     | sum of deviations: 525046202251.0001
[2025-11-24 08:49:19] 2025-11-23 23:48:42,125 | INFO     | mean x: 1763929210.0
[2025-11-24 08:49:19] 2025-11-23 23:48:42,125 | INFO     | mean y: 2621744.4511278197
[2025-11-24 08:49:19] 2025-11-23 23:48:42,125 | INFO     | intersect: -47017558596.146065
[2025-11-24 08:49:19] 2025-11-23 23:48:42,126 | INFO     | chi2: 4.395214789238431
[2025-11-24 08:49:19] 2025-11-23 23:48:42,126 | INFO     | current chi2=4.395214789238431 (change=40.17250857518145 %)
[2025-11-24 08:49:19] 2025-11-23 23:48:42,126 | INFO     | sum of square deviations: 18965499782.5
[2025-11-24 08:49:19] 2025-11-23 23:48:42,127 | INFO     | sum of deviations: 515018260391.5001
[2025-11-24 08:49:19] 2025-11-23 23:48:42,127 | INFO     | mean x: 1763929057.5
[2025-11-24 08:49:19] 2025-11-23 23:48:42,127 | INFO     | mean y: 2619647.5812182743
[2025-11-24 08:49:19] 2025-11-23 23:48:42,127 | INFO     | intersect: -47897814565.38511
[2025-11-24 08:49:19] 2025-11-23 23:48:42,127 | INFO     | chi2: 4.384887464877763
[2025-11-24 08:49:19] 2025-11-23 23:48:42,127 | INFO     | current chi2=4.384887464877763 (change=0.23496745565096122 %)
[2025-11-24 08:49:19] 2025-11-23 23:48:42,127 | INFO     | right removable region: 393
[2025-11-24 08:49:19] 2025-11-23 23:48:42,127 | INFO     | sum of square deviations: 19696741400.0
[2025-11-24 08:49:19] 2025-11-23 23:48:42,128 | INFO     | sum of deviations: 285693637066.9999
[2025-11-24 08:49:19] 2025-11-23 23:48:42,128 | INFO     | mean x: 1763929515.0
[2025-11-24 08:49:19] 2025-11-23 23:48:42,128 | INFO     | mean y: 2622225.3984962404
[2025-11-24 08:49:19] 2025-11-23 23:48:42,128 | INFO     | intersect: -25582495050.405262
[2025-11-24 08:49:19] 2025-11-23 23:48:42,128 | INFO     | chi2: 4.495188962745014
[2025-11-24 08:49:19] 2025-11-23 23:48:42,128 | INFO     | current chi2=4.495188962745014 (change=38.81166404425814 %)
[2025-11-24 08:49:19] 2025-11-23 23:48:42,128 | INFO     | sum of square deviations: 18965499782.5
[2025-11-24 08:49:19] 2025-11-23 23:48:42,129 | INFO     | sum of deviations: 200534400925.5
[2025-11-24 08:49:19] 2025-11-23 23:48:42,129 | INFO     | mean x: 1763929667.5
[2025-11-24 08:49:19] 2025-11-23 23:48:42,129 | INFO     | mean y: 2639949.6370558375
[2025-11-24 08:49:19] 2025-11-23 23:48:42,129 | INFO     | intersect: -18648520483.963764
[2025-11-24 08:49:19] 2025-11-23 23:48:42,130 | INFO     | chi2: 3.07794981940569
[2025-11-24 08:49:19] 2025-11-23 23:48:42,130 | INFO     | current chi2=3.07794981940569 (change=31.52791028553066 %)
[2025-11-24 08:49:19] 2025-11-23 23:48:42,130 | INFO     | sum of square deviations: 18252584090.0
[2025-11-24 08:49:19] 2025-11-23 23:48:42,131 | INFO     | sum of deviations: 182584536319.99988
[2025-11-24 08:49:19] 2025-11-23 23:48:42,131 | INFO     | mean x: 1763929820.0
[2025-11-24 08:49:19] 2025-11-23 23:48:42,131 | INFO     | mean y: 2643783.0437017996
[2025-11-24 08:49:19] 2025-11-23 23:48:42,131 | INFO     | intersect: -17642326742.645893
[2025-11-24 08:49:19] 2025-11-23 23:48:42,131 | INFO     | chi2: 3.059750510230322
[2025-11-24 08:49:19] 2025-11-23 23:48:42,131 | INFO     | current chi2=3.059750510230322 (change=0.5912802431224056 %)
[2025-11-24 08:49:19] 2025-11-23 23:48:42,131 | INFO     | left removable region: 30
[2025-11-24 08:49:19] 2025-11-23 23:48:42,131 | INFO     | sum of square deviations: 14831839022.0
[2025-11-24 08:49:19] 2025-11-23 23:48:42,132 | INFO     | sum of deviations: 248556619541.00003
[2025-11-24 08:49:19] 2025-11-23 23:48:42,132 | INFO     | mean x: 1763929942.0
[2025-11-24 08:49:19] 2025-11-23 23:48:42,132 | INFO     | mean y: 2677480.4325068872
[2025-11-24 08:49:19] 2025-11-23 23:48:42,132 | INFO     | intersect: -29557814838.85045
[2025-11-24 08:49:19] 2025-11-23 23:48:42,132 | INFO     | chi2: 0.016265390202677796
[2025-11-24 08:49:19] 2025-11-23 23:48:42,132 | INFO     | current memory leak: 16.76 B/s (using 363 data points, chi2=0.02)
[2025-11-24 08:49:19] 2025-11-23 23:48:42,132 | INFO     | could have reported an average CPU frequency of 3469 MHz (17 samples)
[2025-11-24 08:49:19] 2025-11-23 23:48:42,132 | INFO     | ..............................
[2025-11-24 08:49:19] 2025-11-23 23:48:42,132 | INFO     | . Timing measurements:
[2025-11-24 08:49:19] 2025-11-23 23:48:42,132 | INFO     | . get job = 0 s
[2025-11-24 08:49:19] 2025-11-23 23:48:42,132 | INFO     | . initial setup = 4 s
[2025-11-24 08:49:19] 2025-11-23 23:48:42,132 | INFO     | . payload setup = 2 s
[2025-11-24 08:49:19] 2025-11-23 23:48:42,132 | INFO     | . stage-in = 0 s
[2025-11-24 08:49:19] 2025-11-23 23:48:42,132 | INFO     | . payload execution = 24640 s
[2025-11-24 08:49:19] 2025-11-23 23:48:42,132 | INFO     | . stage-out = 4 s
[2025-11-24 08:49:19] 2025-11-23 23:48:42,132 | INFO     | . log creation = 0 s
[2025-11-24 08:49:19] 2025-11-23 23:48:42,132 | INFO     | ..............................
[2025-11-24 08:49:19] 2025-11-23 23:48:42,155 | INFO     | 
[2025-11-24 08:49:19] 2025-11-23 23:48:42,155 | INFO     | job summary report
[2025-11-24 08:49:19] 2025-11-23 23:48:42,156 | INFO     | --------------------------------------------------
[2025-11-24 08:49:19] 2025-11-23 23:48:42,156 | INFO     | PanDA job id: 6895331138
[2025-11-24 08:49:19] 2025-11-23 23:48:42,156 | INFO     | task id: 47556137
[2025-11-24 08:49:19] 2025-11-23 23:48:42,156 | INFO     | errors: (none)
[2025-11-24 08:49:19] 2025-11-23 23:48:42,156 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 08:49:19] 2025-11-23 23:48:42,156 | INFO     | pilot state: finished 
[2025-11-24 08:49:19] 2025-11-23 23:48:42,156 | INFO     | transexitcode: 0
[2025-11-24 08:49:19] 2025-11-23 23:48:42,156 | INFO     | exeerrorcode: 0
[2025-11-24 08:49:19] 2025-11-23 23:48:42,156 | INFO     | exeerrordiag: 
[2025-11-24 08:49:19] 2025-11-23 23:48:42,156 | INFO     | exitcode: 0
[2025-11-24 08:49:19] 2025-11-23 23:48:42,156 | INFO     | exitmsg: OK
[2025-11-24 08:49:19] 2025-11-23 23:48:42,156 | INFO     | cpuconsumptiontime: 141897 s
[2025-11-24 08:49:19] 2025-11-23 23:48:42,156 | INFO     | nevents: 1000
[2025-11-24 08:49:19] 2025-11-23 23:48:42,156 | INFO     | neventsw: 0
[2025-11-24 08:49:19] 2025-11-23 23:48:42,156 | INFO     | pid: 2611389
[2025-11-24 08:49:19] 2025-11-23 23:48:42,156 | INFO     | pgrp: 2611389
[2025-11-24 08:49:19] 2025-11-23 23:48:42,156 | INFO     | corecount: 6
[2025-11-24 08:49:19] 2025-11-23 23:48:42,156 | INFO     | event service: False
[2025-11-24 08:49:19] 2025-11-23 23:48:42,156 | INFO     | sizes: {0: 2298806, 2: 2299068, 11: 2299096, 24647: 2335292, 24652: 2344286, 24655: 2344342, 24657: 2344780}
[2025-11-24 08:49:19] 2025-11-23 23:48:42,156 | INFO     | --------------------------------------------------
[2025-11-24 08:49:19] 2025-11-23 23:48:42,156 | INFO     | 
[2025-11-24 08:49:19] 2025-11-23 23:48:42,156 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-11-24 08:49:19] 2025-11-23 23:48:42,163 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 08:49:19] 2025-11-23 23:48:42,163 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 08:49:19] 2025-11-23 23:48:42,163 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 08:49:19] 2025-11-23 23:48:42,163 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 08:49:19] 2025-11-23 23:48:42,163 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 08:49:19] 2025-11-23 23:48:42,163 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 08:49:19] 2025-11-23 23:48:42,163 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 08:49:19] 2025-11-23 23:48:42,163 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 08:49:19] 2025-11-23 23:48:42,163 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 08:49:19] 2025-11-23 23:48:42,164 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 08:49:19] 2025-11-23 23:48:42,164 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 08:49:19] 2025-11-23 23:48:42,164 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 08:49:19] 2025-11-23 23:48:42,164 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 08:49:19] 2025-11-23 23:48:42,164 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 08:49:19] 2025-11-23 23:48:42,164 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 08:49:19] 2025-11-23 23:48:42,164 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 08:49:19] 2025-11-23 23:48:42,164 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 08:49:19] 2025-11-23 23:48:42,164 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 08:49:19] 2025-11-23 23:48:42,164 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 08:49:19] 2025-11-23 23:48:42,164 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 08:49:19] 2025-11-23 23:48:42,164 | INFO     | job 6895331138 has completed (purged errors)
[2025-11-24 08:49:19] 2025-11-23 23:48:42,164 | INFO     | overall cleanup function is called
[2025-11-24 08:49:19] 2025-11-23 23:48:43,174 | INFO     | --- collectZombieJob: --- 10, [2611389]
[2025-11-24 08:49:19] 2025-11-23 23:48:43,174 | INFO     | zombie collector waiting for pid 2611389
[2025-11-24 08:49:19] 2025-11-23 23:48:43,174 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 08:49:19] 2025-11-23 23:48:43,174 | INFO     | collected zombie processes
[2025-11-24 08:49:19] 2025-11-23 23:48:43,174 | INFO     | will attempt to kill all subprocesses of pid=2611389
[2025-11-24 08:49:19] 2025-11-23 23:48:43,217 | INFO     | process IDs to be killed: [2611389] (in reverse order)
[2025-11-24 08:49:19] 2025-11-23 23:48:43,236 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 08:49:19] 2025-11-23 23:48:43,236 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 08:49:19] 2025-11-23 23:48:43,238 | INFO     | did not find any defunct processes belonging to 2611389
[2025-11-24 08:49:19] 2025-11-23 23:48:43,240 | INFO     | did not find any defunct processes belonging to 2611389
[2025-11-24 08:49:19] 2025-11-23 23:48:43,240 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 08:49:19] 2025-11-23 23:48:43,240 | INFO     | ready for new job
[2025-11-24 08:49:19] 2025-11-23 23:48:43,240 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 08:49:19] 2025-11-23 23:48:43,241 | INFO     | ***************************************
[2025-11-24 08:49:19] 2025-11-23 23:48:43,241 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 08:49:19] 2025-11-23 23:48:43,241 | INFO     | ***************************************
[2025-11-24 08:49:19] 2025-11-23 23:48:43,242 | INFO     | 
[2025-11-24 08:49:19] 2025-11-23 23:48:43,242 | INFO     | architecture information:
[2025-11-24 08:49:19] 2025-11-23 23:48:43,242 | INFO     | executing command: cat /etc/os-release
[2025-11-24 08:49:19] 2025-11-23 23:48:43,248 | INFO     | cat /etc/os-release:
[2025-11-24 08:49:19] NAME="CentOS Linux"
[2025-11-24 08:49:19] VERSION="7 (Core)"
[2025-11-24 08:49:19] ID="centos"
[2025-11-24 08:49:19] ID_LIKE="rhel fedora"
[2025-11-24 08:49:19] VERSION_ID="7"
[2025-11-24 08:49:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 08:49:19] ANSI_COLOR="0;31"
[2025-11-24 08:49:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 08:49:19] HOME_URL="https://www.centos.org/"
[2025-11-24 08:49:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 08:49:19] 
[2025-11-24 08:49:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 08:49:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 08:49:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 08:49:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 08:49:19] 
[2025-11-24 08:49:19] 2025-11-23 23:48:43,248 | INFO     | ***************************************
[2025-11-24 08:49:19] 2025-11-23 23:48:43,751 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-11-24 08:49:19] 2025-11-23 23:48:43,757 | INFO     | sufficient remaining disk space (289935458304 B)
[2025-11-24 08:49:19] 2025-11-23 23:48:43,757 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 08:49:19] 2025-11-23 23:48:43,757 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 08:49:19] 2025-11-23 23:48:43,757 | INFO     | update_server=False
[2025-11-24 08:49:19] 2025-11-23 23:48:43,757 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 08:49:19] 2025-11-23 23:48:43,758 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 08:49:19] 2025-11-23 23:48:43,758 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 08:49:19] 2025-11-23 23:48:43,949 | INFO     | all job control threads have been joined
[2025-11-24 08:49:19] 2025-11-23 23:48:44,021 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 08:49:19] 2025-11-23 23:48:44,021 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 08:49:19] 2025-11-23 23:48:44,021 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 08:49:19] 2025-11-23 23:48:44,021 | INFO     | will abort loop
[2025-11-24 08:49:19] 2025-11-23 23:48:44,149 | INFO     | all data control threads have been joined
[2025-11-24 08:49:19] 2025-11-23 23:48:44,661 | INFO     | all payload control threads have been joined
[2025-11-24 08:49:19] 2025-11-23 23:48:44,759 | INFO     | [job] retrieve thread has finished
[2025-11-24 08:49:19] 2025-11-23 23:48:44,763 | INFO     | [job] queue monitor thread has finished
[2025-11-24 08:49:19] 2025-11-23 23:48:44,915 | INFO     | [payload] validate_post thread has finished
[2025-11-24 08:49:19] 2025-11-23 23:48:44,946 | INFO     | [data] copytool_in thread has finished
[2025-11-24 08:49:19] 2025-11-23 23:48:44,955 | INFO     | [job] control thread has finished
[2025-11-24 08:49:19] 2025-11-23 23:48:45,027 | INFO     | [job] job monitor thread has finished
[2025-11-24 08:49:19] 2025-11-23 23:48:45,154 | INFO     | [data] control thread has finished
[2025-11-24 08:49:19] 2025-11-23 23:48:45,412 | INFO     | [job] validate thread has finished
[2025-11-24 08:49:19] 2025-11-23 23:48:45,413 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 08:49:19] 2025-11-23 23:48:45,666 | INFO     | [payload] control thread has finished
[2025-11-24 08:49:19] 2025-11-23 23:48:45,689 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 08:49:19] 2025-11-23 23:48:45,763 | INFO     | [data] copytool_out thread has finished
[2025-11-24 08:49:19] 2025-11-23 23:48:45,969 | INFO     | [payload] failed_post thread has finished
[2025-11-24 08:49:19] 2025-11-23 23:48:46,020 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 08:49:19] 2025-11-23 23:48:46,231 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 08:49:19] 2025-11-23 23:48:46,556 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 08:49:19] 2025-11-23 23:48:50,561 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 08:49:19] 2025-11-23 23:49:13,681 | INFO     | PID=2597916 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 08:49:19] 2025-11-23 23:49:13,681 | INFO     | .. there are 3 such processes running
[2025-11-24 08:49:19] 2025-11-23 23:49:13,681 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 08:49:19] 2025-11-23 23:49:13,681 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 08:49:19] 2025-11-23 23:49:13,681 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 08:49:19] 2025-11-23 23:49:14,375 | INFO     | [monitor] cgroup control has ended
[2025-11-24 08:49:19] 2025-11-23 23:49:14,389 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140339877013312)>', '<ExcThread(monitor, started 140339239175936)>']
[2025-11-24 08:49:19] 2025-11-23 23:49:14,687 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 08:49:19] 2025-11-23 23:49:14,687 | INFO     | [monitor] control thread has ended
[2025-11-24 08:49:19] 2025-11-23 23:49:19,414 | INFO     | all workflow threads have been joined
[2025-11-24 08:49:19] 2025-11-23 23:49:19,414 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 08:49:19] 2025-11-23 23:49:19,414 | INFO     | traces error code: 0
[2025-11-24 08:49:19] 2025-11-23 23:49:19,414 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 08:49:19] 2025-11-23 23:49:19,455 [wrapper] ==== pilot stdout END ====
[2025-11-24 08:49:19] 2025-11-23 23:49:19,456 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 08:49:19] 2025-11-23 23:49:19,457 [wrapper] pilotpid: 2597916
[2025-11-24 08:49:19] 2025-11-23 23:49:19,458 [wrapper] Pilot exit status: 0
[2025-11-24 08:49:19] 2025-11-23 23:49:19,462 [wrapper] pandaids: 6895331138
[2025-11-24 08:49:19] 2025-11-23 23:49:19,473 [wrapper] cleanup supervisor_pilot 2736391 2597917
[2025-11-24 08:49:19] 2025-11-23 23:49:19,475 [wrapper] Test setup, not cleaning
[2025-11-24 08:49:19] 2025-11-23 23:49:19,476 [wrapper] apfmon messages muted
[2025-11-24 08:49:19] 2025-11-23 23:49:19,477 [wrapper] ==== wrapper stdout END ====
[2025-11-24 08:49:19] 2025-11-23 23:49:19,478 [wrapper] ==== wrapper stderr END ====
[2025-11-24 08:49:19]  *** Error codes and diagnostics ***
[2025-11-24 08:49:19]     "exeErrorCode": 0,
[2025-11-24 08:49:19]     "exeErrorDiag": "",
[2025-11-24 08:49:19]     "pilotErrorCode": 0,
[2025-11-24 08:49:19]     "pilotErrorDiag": "",
[2025-11-24 08:49:19]  *** Listing of results directory ***
[2025-11-24 08:49:19] total 1328324
[2025-11-24 08:49:19] -rw-r--r--. 1 boinc boinc    576529 Nov 22 07:05 pilot3.tar.gz
[2025-11-24 08:49:19] -rwx------. 1 boinc boinc     36292 Nov 22 07:39 runpilot2-wrapper.sh
[2025-11-24 08:49:19] -rw-r--r--. 1 boinc boinc      5112 Nov 22 07:39 queuedata.json
[2025-11-24 08:49:19] -rw-r--r--. 1 boinc boinc       100 Nov 24 01:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 08:49:19] -rwxr-xr-x. 1 boinc boinc      7986 Nov 24 01:57 run_atlas
[2025-11-24 08:49:19] -rw-r--r--. 1 boinc boinc       105 Nov 24 01:57 job.xml
[2025-11-24 08:49:19] -rw-r--r--. 2 boinc boinc 410602702 Nov 24 01:57 EVNT.47483658._000160.pool.root.1
[2025-11-24 08:49:19] -rw-r--r--. 2 boinc boinc     15847 Nov 24 01:57 start_atlas.sh
[2025-11-24 08:49:19] drwxrwx--x. 2 boinc boinc        68 Nov 24 01:57 shared
[2025-11-24 08:49:19] -rw-r--r--. 2 boinc boinc    590095 Nov 24 01:57 input.tar.gz
[2025-11-24 08:49:19] -rw-r--r--. 1 boinc boinc         0 Nov 24 01:57 boinc_lockfile
[2025-11-24 08:49:19] -rw-r--r--. 1 boinc boinc      2785 Nov 24 01:57 pandaJob.out
[2025-11-24 08:49:19] -rw-------. 1 boinc boinc    989785 Nov 24 01:57 agis_schedconf.cvmfs.json
[2025-11-24 08:49:19] drwx------. 5 boinc boinc      4096 Nov 24 01:57 pilot3
[2025-11-24 08:49:19] -rw-r--r--. 1 boinc boinc      9524 Nov 24 07:05 init_data.xml
[2025-11-24 08:49:19] -rw-r--r--. 1 boinc boinc       532 Nov 24 08:42 boinc_task_state.xml
[2025-11-24 08:49:19] -rw-------. 1 boinc boinc 935752811 Nov 24 08:48 HITS.47556137._001600.pool.root.1
[2025-11-24 08:49:19] -rw-------. 1 boinc boinc      1031 Nov 24 08:48 memory_monitor_summary.json
[2025-11-24 08:49:19] -rw-------. 1 boinc boinc        95 Nov 24 08:48 pilot_heartbeat.json
[2025-11-24 08:49:19] -rw-------. 1 boinc boinc   1526164 Nov 24 08:48 agis_ddmendpoints.agis.ALL.json
[2025-11-24 08:49:19] -rw-------. 1 boinc boinc   1467462 Nov 24 08:48 log.47556137._001600.job.log.tgz.1
[2025-11-24 08:49:19] -rw-------. 1 boinc boinc      8589 Nov 24 08:48 heartbeat.json
[2025-11-24 08:49:19] -rw-r--r--. 1 boinc boinc        29 Nov 24 08:49 wrapper_checkpoint.txt
[2025-11-24 08:49:19] -rw-r--r--. 1 boinc boinc      8192 Nov 24 08:49 boinc_mmap_file
[2025-11-24 08:49:19] -rw-------. 1 boinc boinc      5010 Nov 24 08:49 pilotlog.txt
[2025-11-24 08:49:19] -rw-------. 1 boinc boinc   3499465 Nov 24 08:49 log.47556137._001600.job.log.1
[2025-11-24 08:49:19] -rw-------. 1 boinc boinc       353 Nov 24 08:49 output.list
[2025-11-24 08:49:19] -rw-r--r--. 1 boinc boinc       620 Nov 24 08:49 runtime_log
[2025-11-24 08:49:19] -rw-------. 1 boinc boinc   4986880 Nov 24 08:49 result.tar.gz
[2025-11-24 08:49:19] -rw-------. 1 boinc boinc       650 Nov 24 08:49 v1FLDmfxog8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmiqHKDmWO5Xan.diag
[2025-11-24 08:49:19] -rw-r--r--. 1 boinc boinc      8776 Nov 24 08:49 runtime_log.err
[2025-11-24 08:49:19] -rw-r--r--. 1 boinc boinc     20746 Nov 24 08:49 stderr.txt
[2025-11-24 08:49:19] HITS file was successfully produced:
[2025-11-24 08:49:19] -rw-------. 1 boinc boinc 935752811 Nov 24 08:48 shared/HITS.pool.root.1
[2025-11-24 08:49:19]  *** Contents of shared directory: ***
[2025-11-24 08:49:19] total 1320272
[2025-11-24 08:49:19] -rw-r--r--. 2 boinc boinc 410602702 Nov 24 01:57 ATLAS.root_0
[2025-11-24 08:49:19] -rw-r--r--. 2 boinc boinc     15847 Nov 24 01:57 start_atlas.sh
[2025-11-24 08:49:19] -rw-r--r--. 2 boinc boinc    590095 Nov 24 01:57 input.tar.gz
[2025-11-24 08:49:19] -rw-------. 1 boinc boinc 935752811 Nov 24 08:48 HITS.pool.root.1
[2025-11-24 08:49:19] -rw-------. 1 boinc boinc   4986880 Nov 24 08:49 result.tar.gz
08:49:21 (2590314): run_atlas exited; CPU time 141922.750243
08:49:21 (2590314): called boinc_finish(0)

</stderr_txt>
]]>

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