Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:55:11 (16608): wrapper (7.7.26015): starting
23:55:11 (16608): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 23:55:11] Arguments: --nthreads 8
[2025-11-25 23:55:11] Threads: 8
[2025-11-25 23:55:11] Checking for CVMFS
[2025-11-25 23:55:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 23:55:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 23:55:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 23:55:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 23:55:14] 2.11.2.0 22894 80753 111012 153300 1 85 20712469 25165825 4632 130560 10 23927736 99.847 14991568 1751 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 23:55:14] CVMFS is ok
[2025-11-25 23:55:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 23:55:14] Checking for apptainer binary...
[2025-11-25 23:55:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 23:55:14] Running /usr/bin/apptainer --version
[2025-11-25 23:55:14] apptainer version 1.3.2-1.el7
[2025-11-25 23:55:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 23:55:40] cg-vwn425.simple-grid.lan
[2025-11-25 23:55:40] apptainer works
[2025-11-25 23:55:40] Set ATHENA_PROC_NUMBER=8
[2025-11-25 23:55:40] Set ATHENA_CORE_NUMBER=8
[2025-11-25 23:55:40] Starting ATLAS job with PandaID=6895338534
[2025-11-25 23:55:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 23:24:23]  *** The last 200 lines of the pilot log: ***
[2025-11-26 23:24:23] 2025-11-26 22:23:05,377 | INFO     | time since job start (84198s) is within the limit (172800.0s)
[2025-11-26 23:24:23] 2025-11-26 22:23:06,705 | INFO     | monitor loop #5685: job 0:6895338534 is in state 'finished'
[2025-11-26 23:24:23] 2025-11-26 22:23:06,705 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:24:23] 2025-11-26 22:23:07,387 | INFO     | time since job start (84200s) is within the limit (172800.0s)
[2025-11-26 23:24:23] 2025-11-26 22:23:09,214 | INFO     | monitor loop #5686: job 0:6895338534 is in state 'finished'
[2025-11-26 23:24:23] 2025-11-26 22:23:09,214 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:24:23] 2025-11-26 22:23:09,394 | INFO     | time since job start (84202s) is within the limit (172800.0s)
[2025-11-26 23:24:23] 2025-11-26 22:23:11,404 | INFO     | time since job start (84204s) is within the limit (172800.0s)
[2025-11-26 23:24:23] 2025-11-26 22:23:11,718 | INFO     | monitor loop #5687: job 0:6895338534 is in state 'finished'
[2025-11-26 23:24:23] 2025-11-26 22:23:11,718 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:24:23] 2025-11-26 22:23:13,411 | INFO     | time since job start (84206s) is within the limit (172800.0s)
[2025-11-26 23:24:23] 2025-11-26 22:23:14,225 | INFO     | monitor loop #5688: job 0:6895338534 is in state 'finished'
[2025-11-26 23:24:23] 2025-11-26 22:23:14,225 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:24:23] 2025-11-26 22:23:15,240 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 23:24:23] 2025-11-26 22:23:15,242 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 23:24:23] 2025-11-26 22:23:15,243 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-6895338534/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 23:24:23] 2025-11-26 22:23:15,244 | INFO     | extracted standard info from prmon json
[2025-11-26 23:24:23] 2025-11-26 22:23:15,244 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 23:24:23] 2025-11-26 22:23:15,244 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 23:24:23] 2025-11-26 22:23:15,269 | INFO     | fitting pss+swap vs Time
[2025-11-26 23:24:23] 2025-11-26 22:23:15,271 | INFO     | sum of square deviations: 799078713968.4832
[2025-11-26 23:24:23] 2025-11-26 22:23:15,337 | INFO     | sum of deviations: 3419491662106.8477
[2025-11-26 23:24:23] 2025-11-26 22:23:15,337 | INFO     | mean x: 1764153912.0955508
[2025-11-26 23:24:23] 2025-11-26 22:23:15,337 | INFO     | mean y: 2837197.5660102116
[2025-11-26 23:24:23] 2025-11-26 22:23:15,338 | INFO     | intersect: -7546493660.121989
[2025-11-26 23:24:23] 2025-11-26 22:23:15,339 | INFO     | chi2: 22.20300451633004
[2025-11-26 23:24:23] 2025-11-26 22:23:15,341 | INFO     | sum of square deviations: 790368338979.9603
[2025-11-26 23:24:23] 2025-11-26 22:23:15,429 | INFO     | time since job start (84208s) is within the limit (172800.0s)
[2025-11-26 23:24:23] 2025-11-26 22:23:15,434 | INFO     | sum of deviations: 3871019060418.066
[2025-11-26 23:24:23] 2025-11-26 22:23:15,434 | INFO     | mean x: 1764153759.5995607
[2025-11-26 23:24:23] 2025-11-26 22:23:15,434 | INFO     | mean y: 2845101.760614934
[2025-11-26 23:24:23] 2025-11-26 22:23:15,435 | INFO     | intersect: -8637522296.725525
[2025-11-26 23:24:23] 2025-11-26 22:23:15,436 | INFO     | chi2: 19.05688933644117
[2025-11-26 23:24:23] 2025-11-26 22:23:15,437 | INFO     | current chi2=19.05688933644117 (change=14.16977228273291 %)
[2025-11-26 23:24:23] 2025-11-26 22:23:15,437 | INFO     | right removable region: 1365
[2025-11-26 23:24:23] 2025-11-26 22:23:15,439 | INFO     | sum of square deviations: 790367422759.9602
[2025-11-26 23:24:23] 2025-11-26 22:23:15,514 | INFO     | sum of deviations: 2841937835604.3545
[2025-11-26 23:24:23] 2025-11-26 22:23:15,514 | INFO     | mean x: 1764154064.5995607
[2025-11-26 23:24:23] 2025-11-26 22:23:15,515 | INFO     | mean y: 2847307.9275256223
[2025-11-26 23:24:23] 2025-11-26 22:23:15,515 | INFO     | intersect: -6340552027.173067
[2025-11-26 23:24:23] 2025-11-26 22:23:15,517 | INFO     | chi2: 17.379889902159334
[2025-11-26 23:24:23] 2025-11-26 22:23:15,517 | INFO     | current chi2=17.379889902159334 (change=21.722801572297858 %)
[2025-11-26 23:24:23] 2025-11-26 22:23:15,517 | INFO     | left removable region: 10
[2025-11-26 23:24:23] 2025-11-26 22:23:15,519 | INFO     | sum of square deviations: 771427001101.0525
[2025-11-26 23:24:23] 2025-11-26 22:23:15,590 | INFO     | sum of deviations: 2887376747401.118
[2025-11-26 23:24:23] 2025-11-26 22:23:15,590 | INFO     | mean x: 1764154034.1084871
[2025-11-26 23:24:23] 2025-11-26 22:23:15,591 | INFO     | mean y: 2866087.9719557194
[2025-11-26 23:24:23] 2025-11-26 22:23:15,591 | INFO     | intersect: -6600192049.283302
[2025-11-26 23:24:23] 2025-11-26 22:23:15,593 | INFO     | chi2: 9.81154249382589
[2025-11-26 23:24:23] 2025-11-26 22:23:15,593 | INFO     | current memory leak: 3.74 B/s (using 1355 data points, chi2=9.81)
[2025-11-26 23:24:23] 2025-11-26 22:23:15,594 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-26 23:24:23] 2025-11-26 22:23:15,594 | INFO     | ..............................
[2025-11-26 23:24:23] 2025-11-26 22:23:15,595 | INFO     | . Timing measurements:
[2025-11-26 23:24:23] 2025-11-26 22:23:15,595 | INFO     | . get job = 0 s
[2025-11-26 23:24:23] 2025-11-26 22:23:15,595 | INFO     | . initial setup = 16 s
[2025-11-26 23:24:23] 2025-11-26 22:23:15,595 | INFO     | . payload setup = 171 s
[2025-11-26 23:24:23] 2025-11-26 22:23:15,595 | INFO     | . stage-in = 0 s
[2025-11-26 23:24:23] 2025-11-26 22:23:15,595 | INFO     | . payload execution = 83743 s
[2025-11-26 23:24:23] 2025-11-26 22:23:15,595 | INFO     | . stage-out = 5 s
[2025-11-26 23:24:23] 2025-11-26 22:23:15,595 | INFO     | . log creation = 2 s
[2025-11-26 23:24:23] 2025-11-26 22:23:15,595 | INFO     | ..............................
[2025-11-26 23:24:23] 2025-11-26 22:23:15,746 | INFO     | 
[2025-11-26 23:24:23] 2025-11-26 22:23:15,746 | INFO     | job summary report
[2025-11-26 23:24:23] 2025-11-26 22:23:15,746 | INFO     | --------------------------------------------------
[2025-11-26 23:24:23] 2025-11-26 22:23:15,746 | INFO     | PanDA job id: 6895338534
[2025-11-26 23:24:23] 2025-11-26 22:23:15,746 | INFO     | task id: 47556137
[2025-11-26 23:24:23] 2025-11-26 22:23:15,747 | INFO     | errors: (none)
[2025-11-26 23:24:23] 2025-11-26 22:23:15,747 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 23:24:23] 2025-11-26 22:23:15,747 | INFO     | pilot state: finished 
[2025-11-26 23:24:23] 2025-11-26 22:23:15,747 | INFO     | transexitcode: 0
[2025-11-26 23:24:23] 2025-11-26 22:23:15,747 | INFO     | exeerrorcode: 0
[2025-11-26 23:24:23] 2025-11-26 22:23:15,747 | INFO     | exeerrordiag: 
[2025-11-26 23:24:23] 2025-11-26 22:23:15,747 | INFO     | exitcode: 0
[2025-11-26 23:24:23] 2025-11-26 22:23:15,747 | INFO     | exitmsg: OK
[2025-11-26 23:24:23] 2025-11-26 22:23:15,747 | INFO     | cpuconsumptiontime: 315060 s
[2025-11-26 23:24:23] 2025-11-26 22:23:15,748 | INFO     | nevents: 1000
[2025-11-26 23:24:23] 2025-11-26 22:23:15,748 | INFO     | neventsw: 0
[2025-11-26 23:24:23] 2025-11-26 22:23:15,748 | INFO     | pid: 27090
[2025-11-26 23:24:23] 2025-11-26 22:23:15,748 | INFO     | pgrp: 27090
[2025-11-26 23:24:23] 2025-11-26 22:23:15,748 | INFO     | corecount: 8
[2025-11-26 23:24:23] 2025-11-26 22:23:15,748 | INFO     | event service: False
[2025-11-26 23:24:23] 2025-11-26 22:23:15,748 | INFO     | sizes: {0: 2283435, 1: 2284121, 2: 2284320, 13: 2284320, 24: 2284376, 34: 2284404, 45: 2284560, 56: 2284588, 67: 2284616, 77: 2284644, 88: 2284700, 99: 2285008, 10
[2025-11-26 23:24:23] 2025-11-26 22:23:15,748 | INFO     | --------------------------------------------------
[2025-11-26 23:24:23] 2025-11-26 22:23:15,748 | INFO     | 
[2025-11-26 23:24:23] 2025-11-26 22:23:15,749 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-11-26 23:24:23] 2025-11-26 22:23:16,199 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 23:24:23] 2025-11-26 22:23:16,199 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 23:24:23] 2025-11-26 22:23:16,199 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 23:24:23] 2025-11-26 22:23:16,199 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 23:24:23] 2025-11-26 22:23:16,199 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 23:24:23] 2025-11-26 22:23:16,199 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 23:24:23] 2025-11-26 22:23:16,200 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 23:24:23] 2025-11-26 22:23:16,200 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 23:24:23] 2025-11-26 22:23:16,200 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 23:24:23] 2025-11-26 22:23:16,200 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 23:24:23] 2025-11-26 22:23:16,200 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 23:24:23] 2025-11-26 22:23:16,200 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 23:24:23] 2025-11-26 22:23:16,200 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 23:24:23] 2025-11-26 22:23:16,200 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 23:24:23] 2025-11-26 22:23:16,200 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 23:24:23] 2025-11-26 22:23:16,200 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 23:24:23] 2025-11-26 22:23:16,201 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 23:24:23] 2025-11-26 22:23:16,201 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 23:24:23] 2025-11-26 22:23:16,201 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 23:24:23] 2025-11-26 22:23:16,201 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 23:24:23] 2025-11-26 22:23:16,201 | INFO     | job 6895338534 has completed (purged errors)
[2025-11-26 23:24:23] 2025-11-26 22:23:16,201 | INFO     | overall cleanup function is called
[2025-11-26 23:24:23] 2025-11-26 22:23:17,219 | INFO     | --- collectZombieJob: --- 10, [27090]
[2025-11-26 23:24:23] 2025-11-26 22:23:17,219 | INFO     | zombie collector waiting for pid 27090
[2025-11-26 23:24:23] 2025-11-26 22:23:17,219 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 23:24:23] 2025-11-26 22:23:17,219 | INFO     | collected zombie processes
[2025-11-26 23:24:23] 2025-11-26 22:23:17,219 | INFO     | will attempt to kill all subprocesses of pid=27090
[2025-11-26 23:24:23] 2025-11-26 22:23:17,356 | INFO     | process IDs to be killed: [27090] (in reverse order)
[2025-11-26 23:24:23] 2025-11-26 22:23:17,791 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 23:24:23] 2025-11-26 22:23:17,792 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 23:24:23] 2025-11-26 22:23:17,795 | INFO     | did not find any defunct processes belonging to 27090
[2025-11-26 23:24:23] 2025-11-26 22:23:17,797 | INFO     | did not find any defunct processes belonging to 27090
[2025-11-26 23:24:23] 2025-11-26 22:23:17,834 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 23:24:23] 2025-11-26 22:23:17,834 | INFO     | ready for new job
[2025-11-26 23:24:23] 2025-11-26 22:23:17,834 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 23:24:23] 2025-11-26 22:23:17,839 | INFO     | ***************************************
[2025-11-26 23:24:23] 2025-11-26 22:23:17,840 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 23:24:23] 2025-11-26 22:23:17,840 | INFO     | ***************************************
[2025-11-26 23:24:23] 2025-11-26 22:23:17,840 | INFO     | 
[2025-11-26 23:24:23] 2025-11-26 22:23:17,840 | INFO     | pilot is running in a VM
[2025-11-26 23:24:23] 2025-11-26 22:23:17,841 | INFO     | architecture information:
[2025-11-26 23:24:23] 2025-11-26 22:23:17,847 | INFO     | executing command: cat /etc/os-release
[2025-11-26 23:24:23] 2025-11-26 22:23:18,105 | INFO     | cat /etc/os-release:
[2025-11-26 23:24:23] NAME="CentOS Linux"
[2025-11-26 23:24:23] VERSION="7 (Core)"
[2025-11-26 23:24:23] ID="centos"
[2025-11-26 23:24:23] ID_LIKE="rhel fedora"
[2025-11-26 23:24:23] VERSION_ID="7"
[2025-11-26 23:24:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 23:24:23] ANSI_COLOR="0;31"
[2025-11-26 23:24:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 23:24:23] HOME_URL="https://www.centos.org/"
[2025-11-26 23:24:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 23:24:23] 
[2025-11-26 23:24:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 23:24:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 23:24:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 23:24:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 23:24:23] 
[2025-11-26 23:24:23] 2025-11-26 22:23:18,106 | INFO     | ***************************************
[2025-11-26 23:24:23] 2025-11-26 22:23:18,613 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-11-26 23:24:23] 2025-11-26 22:23:18,902 | INFO     | sufficient remaining disk space (495223570432 B)
[2025-11-26 23:24:23] 2025-11-26 22:23:18,902 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 23:24:23] 2025-11-26 22:23:18,903 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 23:24:23] 2025-11-26 22:23:18,903 | INFO     | update_server=False
[2025-11-26 23:24:23] 2025-11-26 22:23:18,903 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 23:24:23] 2025-11-26 22:23:19,242 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 23:24:23] 2025-11-26 22:23:19,242 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 23:24:23] 2025-11-26 22:23:19,242 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:24:23] 2025-11-26 22:23:19,242 | INFO     | will abort loop
[2025-11-26 23:24:23] 2025-11-26 22:23:19,387 | INFO     | all data control threads have been joined
[2025-11-26 23:24:23] 2025-11-26 22:23:19,581 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 23:24:23] 2025-11-26 22:23:19,909 | INFO     | [job] retrieve thread has finished
[2025-11-26 23:24:23] 2025-11-26 22:23:19,923 | INFO     | [payload] failed_post thread has finished
[2025-11-26 23:24:23] 2025-11-26 22:23:20,027 | INFO     | all payload control threads have been joined
[2025-11-26 23:24:23] 2025-11-26 22:23:20,132 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 23:24:23] 2025-11-26 22:23:20,155 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 23:24:23] 2025-11-26 22:23:20,212 | INFO     | [payload] validate_post thread has finished
[2025-11-26 23:24:23] 2025-11-26 22:23:20,228 | INFO     | all job control threads have been joined
[2025-11-26 23:24:23] 2025-11-26 22:23:20,248 | INFO     | [job] job monitor thread has finished
[2025-11-26 23:24:23] 2025-11-26 22:23:20,312 | INFO     | [data] copytool_in thread has finished
[2025-11-26 23:24:23] 2025-11-26 22:23:20,393 | INFO     | [data] control thread has finished
[2025-11-26 23:24:23] 2025-11-26 22:23:20,405 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 23:24:23] 2025-11-26 22:23:20,673 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 23:24:23] 2025-11-26 22:23:20,700 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 23:24:23] 2025-11-26 22:23:20,761 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:24:23] 2025-11-26 22:23:20,826 | INFO     | [job] validate thread has finished
[2025-11-26 23:24:23] 2025-11-26 22:23:21,033 | INFO     | [payload] control thread has finished
[2025-11-26 23:24:23] 2025-11-26 22:23:21,234 | INFO     | [job] control thread has finished
[2025-11-26 23:24:23] 2025-11-26 22:23:21,588 | INFO     | [data] copytool_out thread has finished
[2025-11-26 23:24:23] 2025-11-26 22:23:21,767 | INFO     | [job] queue monitor thread has finished
[2025-11-26 23:24:23] 2025-11-26 22:23:24,141 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 23:24:23] 2025-11-26 22:23:48,627 | INFO     | PID=20409 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 23:24:23] 2025-11-26 22:23:48,627 | INFO     | .. there are 9 such processes running
[2025-11-26 23:24:23] 2025-11-26 22:23:48,628 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 23:24:23] 2025-11-26 22:23:48,629 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 23:24:23] 2025-11-26 22:23:48,629 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 23:24:23] 2025-11-26 22:24:13,160 | INFO     | [monitor] cgroup control has ended
[2025-11-26 23:24:23] 2025-11-26 22:24:14,257 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139684403533632)>', '<ExcThread(monitor, started 139683677861632)>']
[2025-11-26 23:24:23] 2025-11-26 22:24:14,782 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 23:24:23] 2025-11-26 22:24:14,782 | INFO     | [monitor] control thread has ended
[2025-11-26 23:24:23] 2025-11-26 22:24:19,283 | INFO     | all workflow threads have been joined
[2025-11-26 23:24:23] 2025-11-26 22:24:19,283 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 23:24:23] 2025-11-26 22:24:19,283 | INFO     | traces error code: 0
[2025-11-26 23:24:23] 2025-11-26 22:24:19,283 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 23:24:23] 2025-11-26 22:24:19,654 [wrapper] ==== pilot stdout END ====
[2025-11-26 23:24:23] 2025-11-26 22:24:19,786 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 23:24:23] 2025-11-26 22:24:19,882 [wrapper] pilotpid: 20409
[2025-11-26 23:24:23] 2025-11-26 22:24:19,981 [wrapper] Pilot exit status: 0
[2025-11-26 23:24:23] 2025-11-26 22:24:20,330 [wrapper] pandaids: 6895338534
[2025-11-26 23:24:23] 2025-11-26 22:24:21,140 [wrapper] cleanup supervisor_pilot 14006 20410
[2025-11-26 23:24:23] 2025-11-26 22:24:21,151 [wrapper] Test setup, not cleaning
[2025-11-26 23:24:23] 2025-11-26 22:24:21,158 [wrapper] apfmon messages muted
[2025-11-26 23:24:23] 2025-11-26 22:24:21,166 [wrapper] ==== wrapper stdout END ====
[2025-11-26 23:24:23] 2025-11-26 22:24:21,176 [wrapper] ==== wrapper stderr END ====
[2025-11-26 23:24:23]  *** Error codes and diagnostics ***
[2025-11-26 23:24:23]     "exeErrorCode": 0,
[2025-11-26 23:24:23]     "exeErrorDiag": "",
[2025-11-26 23:24:23]     "pilotErrorCode": 0,
[2025-11-26 23:24:23]     "pilotErrorDiag": "",
[2025-11-26 23:24:23]  *** Listing of results directory ***
[2025-11-26 23:24:23] total 1331844
[2025-11-26 23:24:23] -rwx------. 1 boinc boinc     36292 Nov 22 10:26 runpilot2-wrapper.sh
[2025-11-26 23:24:23] -rw-r--r--. 1 boinc boinc      5112 Nov 22 10:26 queuedata.json
[2025-11-26 23:24:23] -rw-r--r--. 1 boinc boinc    576529 Nov 22 10:26 pilot3.tar.gz
[2025-11-26 23:24:23] -rw-r--r--. 1 boinc boinc       100 Nov 25 23:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 23:24:23] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 23:55 run_atlas
[2025-11-26 23:24:23] -rw-r--r--. 1 boinc boinc       105 Nov 25 23:55 job.xml
[2025-11-26 23:24:23] -rw-r--r--. 2 boinc boinc 410526224 Nov 25 23:55 EVNT.47483658._000328.pool.root.1
[2025-11-26 23:24:23] -rw-r--r--. 1 boinc boinc      6393 Nov 25 23:55 init_data.xml
[2025-11-26 23:24:23] -rw-r--r--. 2 boinc boinc     15847 Nov 25 23:55 start_atlas.sh
[2025-11-26 23:24:23] drwxrwx--x. 2 boinc boinc        68 Nov 25 23:55 shared
[2025-11-26 23:24:23] -rw-r--r--. 2 boinc boinc    590095 Nov 25 23:55 input.tar.gz
[2025-11-26 23:24:23] -rw-r--r--. 1 boinc boinc         0 Nov 25 23:55 boinc_lockfile
[2025-11-26 23:24:23] -rw-r--r--. 1 boinc boinc      2784 Nov 25 23:55 pandaJob.out
[2025-11-26 23:24:23] -rw-------. 1 boinc boinc    991877 Nov 25 23:59 agis_schedconf.cvmfs.json
[2025-11-26 23:24:23] drwx------. 5 boinc boinc      4096 Nov 25 23:59 pilot3
[2025-11-26 23:24:23] -rw-r--r--. 1 boinc boinc       533 Nov 26 23:02 boinc_task_state.xml
[2025-11-26 23:24:23] -rw-------. 1 boinc boinc 921905997 Nov 26 23:20 HITS.47556137._003248.pool.root.1
[2025-11-26 23:24:23] -rw-------. 1 boinc boinc      1031 Nov 26 23:21 memory_monitor_summary.json
[2025-11-26 23:24:23] -rw-------. 1 boinc boinc   1516240 Nov 26 23:21 agis_ddmendpoints.agis.ALL.json
[2025-11-26 23:24:23] -rw-------. 1 boinc boinc   2468088 Nov 26 23:21 log.47556137._003248.job.log.tgz.1
[2025-11-26 23:24:23] -rw-------. 1 boinc boinc      8630 Nov 26 23:23 heartbeat.json
[2025-11-26 23:24:23] -rw-------. 1 boinc boinc        95 Nov 26 23:23 pilot_heartbeat.json
[2025-11-26 23:24:23] -rw-r--r--. 1 boinc boinc      8192 Nov 26 23:24 boinc_mmap_file
[2025-11-26 23:24:23] -rw-r--r--. 1 boinc boinc        29 Nov 26 23:24 wrapper_checkpoint.txt
[2025-11-26 23:24:23] -rw-------. 1 boinc boinc      5071 Nov 26 23:24 pilotlog.txt
[2025-11-26 23:24:23] -rw-------. 1 boinc boinc  11265241 Nov 26 23:24 log.47556137._003248.job.log.1
[2025-11-26 23:24:23] -rw-------. 1 boinc boinc       353 Nov 26 23:24 output.list
[2025-11-26 23:24:23] -rw-r--r--. 1 boinc boinc       620 Nov 26 23:24 runtime_log
[2025-11-26 23:24:23] -rw-------. 1 boinc boinc  13752320 Nov 26 23:24 result.tar.gz
[2025-11-26 23:24:23] -rw-r--r--. 1 boinc boinc      8833 Nov 26 23:24 runtime_log.err
[2025-11-26 23:24:23] -rw-------. 1 boinc boinc       662 Nov 26 23:24 k6VKDmt3yg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm32HKDmOyonXo.diag
[2025-11-26 23:24:23] -rw-r--r--. 1 boinc boinc     21415 Nov 26 23:24 stderr.txt
[2025-11-26 23:24:23] HITS file was successfully produced:
[2025-11-26 23:24:23] -rw-------. 1 boinc boinc 921905997 Nov 26 23:20 shared/HITS.pool.root.1
[2025-11-26 23:24:23]  *** Contents of shared directory: ***
[2025-11-26 23:24:23] total 1315236
[2025-11-26 23:24:23] -rw-r--r--. 2 boinc boinc 410526224 Nov 25 23:55 ATLAS.root_0
[2025-11-26 23:24:23] -rw-r--r--. 2 boinc boinc     15847 Nov 25 23:55 start_atlas.sh
[2025-11-26 23:24:23] -rw-r--r--. 2 boinc boinc    590095 Nov 25 23:55 input.tar.gz
[2025-11-26 23:24:23] -rw-------. 1 boinc boinc 921905997 Nov 26 23:20 HITS.pool.root.1
[2025-11-26 23:24:23] -rw-------. 1 boinc boinc  13752320 Nov 26 23:24 result.tar.gz
23:24:24 (16608): run_atlas exited; CPU time 315622.291388
23:24:24 (16608): called boinc_finish(0)

</stderr_txt>
]]>

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