Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:59:34 (12004): wrapper (7.7.26015): starting
02:59:34 (12004): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 02:59:34] Arguments: --nthreads 8
[2025-11-26 02:59:34] Threads: 8
[2025-11-26 02:59:34] Checking for CVMFS
[2025-11-26 02:59:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 02:59:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 02:59:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 02:59:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 02:59:35] 2.11.2.0 10419 84635 117940 153304 0 181 17366744 25165824 4151 130560 14 27576300 99.877 14133493 1477 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 02:59:35] CVMFS is ok
[2025-11-26 02:59:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 02:59:35] Checking for apptainer binary...
[2025-11-26 02:59:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 02:59:35] Running /usr/bin/apptainer --version
[2025-11-26 02:59:35] apptainer version 1.3.2-1.el7
[2025-11-26 02:59:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 02:59:36] cg-vwn422.simple-grid.lan
[2025-11-26 02:59:36] apptainer works
[2025-11-26 02:59:36] Set ATHENA_PROC_NUMBER=8
[2025-11-26 02:59:36] Set ATHENA_CORE_NUMBER=8
[2025-11-26 02:59:36] Starting ATLAS job with PandaID=6895337551
[2025-11-26 02:59:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 02:19:41]  *** The last 200 lines of the pilot log: ***
[2025-11-27 02:19:41] 2025-11-27 01:18:53,463 | INFO     | 83931s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-27 02:19:41] 2025-11-27 01:18:55,477 | INFO     | time since job start (83931s) is within the limit (172800.0s)
[2025-11-27 02:19:41] 2025-11-27 01:18:55,925 | INFO     | monitor loop #5603: job 0:6895337551 is in state 'finished'
[2025-11-27 02:19:41] 2025-11-27 01:18:55,925 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:19:41] 2025-11-27 01:18:57,486 | INFO     | time since job start (83933s) is within the limit (172800.0s)
[2025-11-27 02:19:41] 2025-11-27 01:18:58,433 | INFO     | monitor loop #5604: job 0:6895337551 is in state 'finished'
[2025-11-27 02:19:41] 2025-11-27 01:18:58,433 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:19:41] 2025-11-27 01:18:59,493 | INFO     | time since job start (83935s) is within the limit (172800.0s)
[2025-11-27 02:19:41] 2025-11-27 01:19:00,693 | INFO     | PID=15764 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 02:19:41] 2025-11-27 01:19:00,693 | INFO     | .. there are 9 such processes running
[2025-11-27 02:19:41] 2025-11-27 01:19:00,938 | INFO     | monitor loop #5605: job 0:6895337551 is in state 'finished'
[2025-11-27 02:19:41] 2025-11-27 01:19:00,938 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:19:41] 2025-11-27 01:19:01,694 | INFO     | time since job start (83937s) is within the limit (172800.0s)
[2025-11-27 02:19:41] 2025-11-27 01:19:03,452 | INFO     | monitor loop #5606: job 0:6895337551 is in state 'finished'
[2025-11-27 02:19:41] 2025-11-27 01:19:03,452 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:19:41] 2025-11-27 01:19:03,702 | INFO     | time since job start (83939s) is within the limit (172800.0s)
[2025-11-27 02:19:41] 2025-11-27 01:19:04,686 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 02:19:41] 2025-11-27 01:19:04,687 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 02:19:41] 2025-11-27 01:19:04,689 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6895337551/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 02:19:41] 2025-11-27 01:19:04,689 | INFO     | extracted standard info from prmon json
[2025-11-27 02:19:41] 2025-11-27 01:19:04,690 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 02:19:41] 2025-11-27 01:19:04,690 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 02:19:41] 2025-11-27 01:19:04,738 | INFO     | fitting pss+swap vs Time
[2025-11-27 02:19:41] 2025-11-27 01:19:04,740 | INFO     | sum of square deviations: 802579695252.1165
[2025-11-27 02:19:41] 2025-11-27 01:19:04,825 | INFO     | sum of deviations: 1935734092655.7546
[2025-11-27 02:19:41] 2025-11-27 01:19:04,825 | INFO     | mean x: 1764164336.0968683
[2025-11-27 02:19:41] 2025-11-27 01:19:04,825 | INFO     | mean y: 2855149.708667152
[2025-11-27 02:19:41] 2025-11-27 01:19:04,825 | INFO     | intersect: -4252115503.837913
[2025-11-27 02:19:41] 2025-11-27 01:19:04,827 | INFO     | chi2: 16.4486790277313
[2025-11-27 02:19:41] 2025-11-27 01:19:04,829 | INFO     | sum of square deviations: 793843841936.0781
[2025-11-27 02:19:41] 2025-11-27 01:19:04,921 | INFO     | sum of deviations: 2396464444192.357
[2025-11-27 02:19:41] 2025-11-27 01:19:04,921 | INFO     | mean x: 1764164183.6008773
[2025-11-27 02:19:41] 2025-11-27 01:19:04,922 | INFO     | mean y: 2863191.8633040935
[2025-11-27 02:19:41] 2025-11-27 01:19:04,922 | INFO     | intersect: -5322814877.775947
[2025-11-27 02:19:41] 2025-11-27 01:19:04,923 | INFO     | chi2: 13.121203556741662
[2025-11-27 02:19:41] 2025-11-27 01:19:04,924 | INFO     | current chi2=13.121203556741662 (change=20.229438883084473 %)
[2025-11-27 02:19:41] 2025-11-27 01:19:04,924 | INFO     | right removable region: 1367
[2025-11-27 02:19:41] 2025-11-27 01:19:04,926 | INFO     | sum of square deviations: 793842923276.0786
[2025-11-27 02:19:41] 2025-11-27 01:19:04,992 | INFO     | sum of deviations: 1516421658664.5427
[2025-11-27 02:19:41] 2025-11-27 01:19:04,992 | INFO     | mean x: 1764164488.6008773
[2025-11-27 02:19:41] 2025-11-27 01:19:04,992 | INFO     | mean y: 2862465.38377193
[2025-11-27 02:19:41] 2025-11-27 01:19:04,993 | INFO     | intersect: -3367095446.3413587
[2025-11-27 02:19:41] 2025-11-27 01:19:04,994 | INFO     | chi2: 13.990752648347998
[2025-11-27 02:19:41] 2025-11-27 01:19:04,994 | INFO     | current chi2=13.990752648347998 (change=14.943001655266128 %)
[2025-11-27 02:19:41] 2025-11-27 01:19:04,995 | INFO     | left removable region: 10
[2025-11-27 02:19:41] 2025-11-27 01:19:04,996 | INFO     | sum of square deviations: 774847189840.7189
[2025-11-27 02:19:41] 2025-11-27 01:19:05,071 | INFO     | sum of deviations: 1989288055232.689
[2025-11-27 02:19:41] 2025-11-27 01:19:05,071 | INFO     | mean x: 1764164458.1061165
[2025-11-27 02:19:41] 2025-11-27 01:19:05,072 | INFO     | mean y: 2874128.904937362
[2025-11-27 02:19:41] 2025-11-27 01:19:05,072 | INFO     | intersect: -4526317342.639229
[2025-11-27 02:19:41] 2025-11-27 01:19:05,073 | INFO     | chi2: 9.72233768322494
[2025-11-27 02:19:41] 2025-11-27 01:19:05,074 | INFO     | current memory leak: 2.57 B/s (using 1357 data points, chi2=9.72)
[2025-11-27 02:19:41] 2025-11-27 01:19:05,075 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-27 02:19:41] 2025-11-27 01:19:05,075 | INFO     | ..............................
[2025-11-27 02:19:41] 2025-11-27 01:19:05,076 | INFO     | . Timing measurements:
[2025-11-27 02:19:41] 2025-11-27 01:19:05,076 | INFO     | . get job = 0 s
[2025-11-27 02:19:41] 2025-11-27 01:19:05,076 | INFO     | . initial setup = 2 s
[2025-11-27 02:19:41] 2025-11-27 01:19:05,076 | INFO     | . payload setup = 28 s
[2025-11-27 02:19:41] 2025-11-27 01:19:05,076 | INFO     | . stage-in = 0 s
[2025-11-27 02:19:41] 2025-11-27 01:19:05,076 | INFO     | . payload execution = 83772 s
[2025-11-27 02:19:41] 2025-11-27 01:19:05,076 | INFO     | . stage-out = 7 s
[2025-11-27 02:19:41] 2025-11-27 01:19:05,076 | INFO     | . log creation = 2 s
[2025-11-27 02:19:41] 2025-11-27 01:19:05,076 | INFO     | ..............................
[2025-11-27 02:19:41] 2025-11-27 01:19:05,204 | INFO     | 
[2025-11-27 02:19:41] 2025-11-27 01:19:05,204 | INFO     | job summary report
[2025-11-27 02:19:41] 2025-11-27 01:19:05,204 | INFO     | --------------------------------------------------
[2025-11-27 02:19:41] 2025-11-27 01:19:05,204 | INFO     | PanDA job id: 6895337551
[2025-11-27 02:19:41] 2025-11-27 01:19:05,204 | INFO     | task id: 47556137
[2025-11-27 02:19:41] 2025-11-27 01:19:05,204 | INFO     | errors: (none)
[2025-11-27 02:19:41] 2025-11-27 01:19:05,204 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 02:19:41] 2025-11-27 01:19:05,204 | INFO     | pilot state: finished 
[2025-11-27 02:19:41] 2025-11-27 01:19:05,205 | INFO     | transexitcode: 0
[2025-11-27 02:19:41] 2025-11-27 01:19:05,205 | INFO     | exeerrorcode: 0
[2025-11-27 02:19:41] 2025-11-27 01:19:05,205 | INFO     | exeerrordiag: 
[2025-11-27 02:19:41] 2025-11-27 01:19:05,205 | INFO     | exitcode: 0
[2025-11-27 02:19:41] 2025-11-27 01:19:05,205 | INFO     | exitmsg: OK
[2025-11-27 02:19:41] 2025-11-27 01:19:05,205 | INFO     | cpuconsumptiontime: 318353 s
[2025-11-27 02:19:41] 2025-11-27 01:19:05,205 | INFO     | nevents: 1000
[2025-11-27 02:19:41] 2025-11-27 01:19:05,205 | INFO     | neventsw: 0
[2025-11-27 02:19:41] 2025-11-27 01:19:05,205 | INFO     | pid: 27290
[2025-11-27 02:19:41] 2025-11-27 01:19:05,206 | INFO     | pgrp: 27290
[2025-11-27 02:19:41] 2025-11-27 01:19:05,206 | INFO     | corecount: 8
[2025-11-27 02:19:41] 2025-11-27 01:19:05,206 | INFO     | event service: False
[2025-11-27 02:19:41] 2025-11-27 01:19:05,206 | INFO     | sizes: {0: 2283986, 1: 2284241, 2: 2284241, 11: 2284531, 12: 2284559, 83805: 2345151, 83813: 2354145, 83816: 2354201, 83917: 2354447}
[2025-11-27 02:19:41] 2025-11-27 01:19:05,206 | INFO     | --------------------------------------------------
[2025-11-27 02:19:41] 2025-11-27 01:19:05,206 | INFO     | 
[2025-11-27 02:19:41] 2025-11-27 01:19:05,206 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-27 02:19:41] 2025-11-27 01:19:05,673 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 02:19:41] 2025-11-27 01:19:05,674 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 02:19:41] 2025-11-27 01:19:05,674 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 02:19:41] 2025-11-27 01:19:05,674 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 02:19:41] 2025-11-27 01:19:05,674 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 02:19:41] 2025-11-27 01:19:05,674 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 02:19:41] 2025-11-27 01:19:05,674 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 02:19:41] 2025-11-27 01:19:05,674 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 02:19:41] 2025-11-27 01:19:05,674 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 02:19:41] 2025-11-27 01:19:05,674 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 02:19:41] 2025-11-27 01:19:05,674 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 02:19:41] 2025-11-27 01:19:05,674 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 02:19:41] 2025-11-27 01:19:05,675 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 02:19:41] 2025-11-27 01:19:05,675 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 02:19:41] 2025-11-27 01:19:05,675 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 02:19:41] 2025-11-27 01:19:05,675 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 02:19:41] 2025-11-27 01:19:05,675 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 02:19:41] 2025-11-27 01:19:05,675 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 02:19:41] 2025-11-27 01:19:05,675 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 02:19:41] 2025-11-27 01:19:05,675 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 02:19:41] 2025-11-27 01:19:05,675 | INFO     | job 6895337551 has completed (purged errors)
[2025-11-27 02:19:41] 2025-11-27 01:19:05,676 | INFO     | overall cleanup function is called
[2025-11-27 02:19:41] 2025-11-27 01:19:06,692 | INFO     | --- collectZombieJob: --- 10, [27290]
[2025-11-27 02:19:41] 2025-11-27 01:19:06,692 | INFO     | zombie collector waiting for pid 27290
[2025-11-27 02:19:41] 2025-11-27 01:19:06,692 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 02:19:41] 2025-11-27 01:19:06,692 | INFO     | collected zombie processes
[2025-11-27 02:19:41] 2025-11-27 01:19:06,692 | INFO     | will attempt to kill all subprocesses of pid=27290
[2025-11-27 02:19:41] 2025-11-27 01:19:06,810 | INFO     | process IDs to be killed: [27290] (in reverse order)
[2025-11-27 02:19:41] 2025-11-27 01:19:07,620 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 02:19:41] 2025-11-27 01:19:07,620 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 02:19:41] 2025-11-27 01:19:07,624 | INFO     | did not find any defunct processes belonging to 27290
[2025-11-27 02:19:41] 2025-11-27 01:19:07,626 | INFO     | did not find any defunct processes belonging to 27290
[2025-11-27 02:19:41] 2025-11-27 01:19:07,683 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 02:19:41] 2025-11-27 01:19:07,683 | INFO     | ready for new job
[2025-11-27 02:19:41] 2025-11-27 01:19:07,683 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 02:19:41] 2025-11-27 01:19:07,688 | INFO     | ***************************************
[2025-11-27 02:19:41] 2025-11-27 01:19:07,688 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 02:19:41] 2025-11-27 01:19:07,689 | INFO     | ***************************************
[2025-11-27 02:19:41] 2025-11-27 01:19:07,689 | INFO     | 
[2025-11-27 02:19:41] 2025-11-27 01:19:07,689 | INFO     | pilot is running in a VM
[2025-11-27 02:19:41] 2025-11-27 01:19:07,689 | INFO     | architecture information:
[2025-11-27 02:19:41] 2025-11-27 01:19:07,703 | INFO     | executing command: cat /etc/os-release
[2025-11-27 02:19:41] 2025-11-27 01:19:07,928 | INFO     | cat /etc/os-release:
[2025-11-27 02:19:41] NAME="CentOS Linux"
[2025-11-27 02:19:41] VERSION="7 (Core)"
[2025-11-27 02:19:41] ID="centos"
[2025-11-27 02:19:41] ID_LIKE="rhel fedora"
[2025-11-27 02:19:41] VERSION_ID="7"
[2025-11-27 02:19:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 02:19:41] ANSI_COLOR="0;31"
[2025-11-27 02:19:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 02:19:41] HOME_URL="https://www.centos.org/"
[2025-11-27 02:19:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 02:19:41] 
[2025-11-27 02:19:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 02:19:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 02:19:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 02:19:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 02:19:41] 
[2025-11-27 02:19:41] 2025-11-27 01:19:07,929 | INFO     | ***************************************
[2025-11-27 02:19:41] 2025-11-27 01:19:08,432 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-27 02:19:41] 2025-11-27 01:19:08,662 | INFO     | sufficient remaining disk space (495233007616 B)
[2025-11-27 02:19:41] 2025-11-27 01:19:08,663 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 02:19:41] 2025-11-27 01:19:08,663 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 02:19:41] 2025-11-27 01:19:08,663 | INFO     | update_server=False
[2025-11-27 02:19:41] 2025-11-27 01:19:08,663 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 02:19:41] 2025-11-27 01:19:08,870 | INFO     | all payload control threads have been joined
[2025-11-27 02:19:41] 2025-11-27 01:19:08,939 | INFO     | all data control threads have been joined
[2025-11-27 02:19:41] 2025-11-27 01:19:09,474 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:19:41] 2025-11-27 01:19:09,474 | INFO     | aborting loop
[2025-11-27 02:19:41] 2025-11-27 01:19:09,575 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 02:19:41] 2025-11-27 01:19:09,669 | INFO     | [job] retrieve thread has finished
[2025-11-27 02:19:41] 2025-11-27 01:19:09,865 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 02:19:41] 2025-11-27 01:19:09,867 | INFO     | all job control threads have been joined
[2025-11-27 02:19:41] 2025-11-27 01:19:09,874 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 02:19:41] 2025-11-27 01:19:09,878 | INFO     | [payload] control thread has finished
[2025-11-27 02:19:41] 2025-11-27 01:19:09,945 | INFO     | [data] control thread has finished
[2025-11-27 02:19:41] 2025-11-27 01:19:10,177 | INFO     | [data] copytool_in thread has finished
[2025-11-27 02:19:41] 2025-11-27 01:19:10,219 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:19:41] 2025-11-27 01:19:10,458 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 02:19:41] 2025-11-27 01:19:10,466 | INFO     | [payload] validate_post thread has finished
[2025-11-27 02:19:41] 2025-11-27 01:19:10,480 | INFO     | [job] job monitor thread has finished
[2025-11-27 02:19:41] 2025-11-27 01:19:10,545 | INFO     | [payload] failed_post thread has finished
[2025-11-27 02:19:41] 2025-11-27 01:19:10,740 | INFO     | [job] validate thread has finished
[2025-11-27 02:19:41] 2025-11-27 01:19:10,873 | INFO     | [job] control thread has finished
[2025-11-27 02:19:41] 2025-11-27 01:19:10,999 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 02:19:41] 2025-11-27 01:19:11,027 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 02:19:41] 2025-11-27 01:19:11,225 | INFO     | [job] queue monitor thread has finished
[2025-11-27 02:19:41] 2025-11-27 01:19:11,872 | INFO     | [data] copytool_out thread has finished
[2025-11-27 02:19:41] 2025-11-27 01:19:13,584 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 02:19:41] 2025-11-27 01:19:31,112 | INFO     | [monitor] cgroup control has ended
[2025-11-27 02:19:41] 2025-11-27 01:19:32,803 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140399852660544)>', '<ExcThread(monitor, started 140399561651968)>']
[2025-11-27 02:19:41] 2025-11-27 01:19:36,893 | INFO     | PID=15764 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 02:19:41] 2025-11-27 01:19:36,894 | INFO     | .. there are 9 such processes running
[2025-11-27 02:19:41] 2025-11-27 01:19:36,894 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 02:19:41] 2025-11-27 01:19:36,894 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 02:19:41] 2025-11-27 01:19:36,894 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 02:19:41] 2025-11-27 01:19:36,894 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 02:19:41] 2025-11-27 01:19:36,894 | INFO     | [monitor] control thread has ended
[2025-11-27 02:19:41] 2025-11-27 01:19:37,829 | INFO     | all workflow threads have been joined
[2025-11-27 02:19:41] 2025-11-27 01:19:37,829 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 02:19:41] 2025-11-27 01:19:37,829 | INFO     | traces error code: 0
[2025-11-27 02:19:41] 2025-11-27 01:19:37,830 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 02:19:41] 2025-11-27 01:19:38,210 [wrapper] ==== pilot stdout END ====
[2025-11-27 02:19:41] 2025-11-27 01:19:38,297 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 02:19:41] 2025-11-27 01:19:38,343 [wrapper] pilotpid: 15764
[2025-11-27 02:19:41] 2025-11-27 01:19:38,389 [wrapper] Pilot exit status: 0
[2025-11-27 02:19:41] 2025-11-27 01:19:38,806 [wrapper] pandaids: 6895337551
[2025-11-27 02:19:41] 2025-11-27 01:19:39,365 [wrapper] cleanup supervisor_pilot  1053 15765
[2025-11-27 02:19:41] 2025-11-27 01:19:39,398 [wrapper] Test setup, not cleaning
[2025-11-27 02:19:41] 2025-11-27 01:19:39,431 [wrapper] apfmon messages muted
[2025-11-27 02:19:41] 2025-11-27 01:19:39,485 [wrapper] ==== wrapper stdout END ====
[2025-11-27 02:19:41] 2025-11-27 01:19:39,519 [wrapper] ==== wrapper stderr END ====
[2025-11-27 02:19:41]  *** Error codes and diagnostics ***
[2025-11-27 02:19:41]     "exeErrorCode": 0,
[2025-11-27 02:19:41]     "exeErrorDiag": "",
[2025-11-27 02:19:41]     "pilotErrorCode": 0,
[2025-11-27 02:19:41]     "pilotErrorDiag": "",
[2025-11-27 02:19:41]  *** Listing of results directory ***
[2025-11-27 02:19:41] total 1321464
[2025-11-27 02:19:41] -rw-r--r--. 1 boinc boinc    576529 Nov 22 08:52 pilot3.tar.gz
[2025-11-27 02:19:41] -rw-r--r--. 1 boinc boinc      5112 Nov 22 09:21 queuedata.json
[2025-11-27 02:19:41] -rwx------. 1 boinc boinc     36292 Nov 22 09:21 runpilot2-wrapper.sh
[2025-11-27 02:19:41] -rw-r--r--. 1 boinc boinc       100 Nov 26 02:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 02:19:41] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 02:59 run_atlas
[2025-11-27 02:19:41] -rw-r--r--. 1 boinc boinc       105 Nov 26 02:59 job.xml
[2025-11-27 02:19:41] -rw-r--r--. 1 boinc boinc      6391 Nov 26 02:59 init_data.xml
[2025-11-27 02:19:41] -rw-r--r--. 2 boinc boinc 406590155 Nov 26 02:59 EVNT.47483658._000313.pool.root.1
[2025-11-27 02:19:41] -rw-r--r--. 2 boinc boinc     15847 Nov 26 02:59 start_atlas.sh
[2025-11-27 02:19:41] drwxrwx--x. 2 boinc boinc        68 Nov 26 02:59 shared
[2025-11-27 02:19:41] -rw-r--r--. 2 boinc boinc    590102 Nov 26 02:59 input.tar.gz
[2025-11-27 02:19:41] -rw-r--r--. 1 boinc boinc         0 Nov 26 02:59 boinc_lockfile
[2025-11-27 02:19:41] -rw-r--r--. 1 boinc boinc      2784 Nov 26 02:59 pandaJob.out
[2025-11-27 02:19:41] -rw-------. 1 boinc boinc    991877 Nov 26 03:00 agis_schedconf.cvmfs.json
[2025-11-27 02:19:41] drwx------. 5 boinc boinc      4096 Nov 26 03:00 pilot3
[2025-11-27 02:19:41] -rw-r--r--. 1 boinc boinc       533 Nov 27 01:52 boinc_task_state.xml
[2025-11-27 02:19:41] -rw-------. 1 boinc boinc 915481289 Nov 27 02:16 HITS.47556137._003096.pool.root.1
[2025-11-27 02:19:41] -rw-------. 1 boinc boinc      1032 Nov 27 02:17 memory_monitor_summary.json
[2025-11-27 02:19:41] -rw-------. 1 boinc boinc   1516240 Nov 27 02:17 agis_ddmendpoints.agis.ALL.json
[2025-11-27 02:19:41] -rw-------. 1 boinc boinc   2452566 Nov 27 02:17 log.47556137._003096.job.log.tgz.1
[2025-11-27 02:19:41] -rw-------. 1 boinc boinc        95 Nov 27 02:18 pilot_heartbeat.json
[2025-11-27 02:19:41] -rw-------. 1 boinc boinc      8622 Nov 27 02:19 heartbeat.json
[2025-11-27 02:19:41] -rw-r--r--. 1 boinc boinc      8192 Nov 27 02:19 boinc_mmap_file
[2025-11-27 02:19:41] -rw-r--r--. 1 boinc boinc        29 Nov 27 02:19 wrapper_checkpoint.txt
[2025-11-27 02:19:41] -rw-------. 1 boinc boinc      4884 Nov 27 02:19 pilotlog.txt
[2025-11-27 02:19:41] -rw-------. 1 boinc boinc  11151704 Nov 27 02:19 log.47556137._003096.job.log.1
[2025-11-27 02:19:41] -rw-------. 1 boinc boinc       353 Nov 27 02:19 output.list
[2025-11-27 02:19:41] -rw-r--r--. 1 boinc boinc       620 Nov 27 02:19 runtime_log
[2025-11-27 02:19:41] -rw-------. 1 boinc boinc  13619200 Nov 27 02:19 result.tar.gz
[2025-11-27 02:19:41] -rw-r--r--. 1 boinc boinc      8817 Nov 27 02:19 runtime_log.err
[2025-11-27 02:19:41] -rw-------. 1 boinc boinc       662 Nov 27 02:19 IelKDmc3xg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmg3JKDmNnPlWn.diag
[2025-11-27 02:19:41] -rw-r--r--. 1 boinc boinc     21487 Nov 27 02:19 stderr.txt
[2025-11-27 02:19:41] HITS file was successfully produced:
[2025-11-27 02:19:41] -rw-------. 1 boinc boinc 915481289 Nov 27 02:16 shared/HITS.pool.root.1
[2025-11-27 02:19:41]  *** Contents of shared directory: ***
[2025-11-27 02:19:41] total 1304988
[2025-11-27 02:19:41] -rw-r--r--. 2 boinc boinc 406590155 Nov 26 02:59 ATLAS.root_0
[2025-11-27 02:19:41] -rw-r--r--. 2 boinc boinc     15847 Nov 26 02:59 start_atlas.sh
[2025-11-27 02:19:41] -rw-r--r--. 2 boinc boinc    590102 Nov 26 02:59 input.tar.gz
[2025-11-27 02:19:41] -rw-------. 1 boinc boinc 915481289 Nov 27 02:16 HITS.pool.root.1
[2025-11-27 02:19:41] -rw-------. 1 boinc boinc  13619200 Nov 27 02:19 result.tar.gz
02:19:43 (12004): run_atlas exited; CPU time 318896.825135
02:19:43 (12004): called boinc_finish(0)

</stderr_txt>
]]>

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