Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:20:28 (3239366): wrapper (7.7.26015): starting
05:20:28 (3239366): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 05:20:28] Arguments: --nthreads 12
[2025-11-24 05:20:28] Threads: 12
[2025-11-24 05:20:28] Checking for CVMFS
[2025-11-24 05:20:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 05:20:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 05:20:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 05:20:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 05:20:28] 2.13.3.0 9330 23856 305708 153233 3 81 38423473 46080001 7301 130560 0 141845461 99.896 42057176 27539 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-11-24 05:20:28] CVMFS is ok
[2025-11-24 05:20:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 05:20:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 05:20:28] Further information can be found at the LHC@home message board.
[2025-11-24 05:20:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 05:20:28] Checking for apptainer binary...
[2025-11-24 05:20:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 05:20:28] Running /usr/bin/apptainer --version
[2025-11-24 05:20:28] apptainer version 1.4.3-1.el9
[2025-11-24 05:20:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 05:20:28] mff2102.farm.particle.cz
[2025-11-24 05:20:28] apptainer works
[2025-11-24 05:20:28] Set ATHENA_PROC_NUMBER=12
[2025-11-24 05:20:28] Set ATHENA_CORE_NUMBER=12
[2025-11-24 05:20:28] Starting ATLAS job with PandaID=6894052046
[2025-11-24 05:20:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 07:30:59]  *** The last 200 lines of the pilot log: ***
[2025-11-24 07:30:59] 2025-11-24 06:30:14,732 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 07:30:59] 2025-11-24 06:30:14,748 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2748.4047708333333
[2025-11-24 07:30:59] 2025-11-24 06:30:14,766 | INFO     | using path: /scratch/.boinc/slots/0/PanDA_Pilot-6894052046/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 07:30:59] 2025-11-24 06:30:14,767 | INFO     | extracted standard info from prmon json
[2025-11-24 07:30:59] 2025-11-24 06:30:14,767 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 07:30:59] 2025-11-24 06:30:14,767 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 07:30:59] 2025-11-24 06:30:14,767 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-24 07:30:59] 2025-11-24 06:30:14,767 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-24 07:30:59] 2025-11-24 06:30:14,770 | INFO     | fitting pss+swap vs Time
[2025-11-24 07:30:59] 2025-11-24 06:30:14,770 | INFO     | sum of square deviations: 635130048.0
[2025-11-24 07:30:59] 2025-11-24 06:30:14,771 | INFO     | sum of deviations: -12465527143.999994
[2025-11-24 07:30:59] 2025-11-24 06:30:14,771 | INFO     | mean x: 1763961914.0
[2025-11-24 07:30:59] 2025-11-24 06:30:14,771 | INFO     | mean y: 2917358.181102362
[2025-11-24 07:30:59] 2025-11-24 06:30:14,771 | INFO     | intersect: 34623724843.49973
[2025-11-24 07:30:59] 2025-11-24 06:30:14,771 | INFO     | chi2: 1.695682362750803
[2025-11-24 07:30:59] 2025-11-24 06:30:14,772 | INFO     | sum of square deviations: 563026370.5
[2025-11-24 07:30:59] 2025-11-24 06:30:14,772 | INFO     | sum of deviations: -10788109402.5
[2025-11-24 07:30:59] 2025-11-24 06:30:14,772 | INFO     | mean x: 1763961761.5
[2025-11-24 07:30:59] 2025-11-24 06:30:14,773 | INFO     | mean y: 2920909.5
[2025-11-24 07:30:59] 2025-11-24 06:30:14,773 | INFO     | intersect: 33802070402.247627
[2025-11-24 07:30:59] 2025-11-24 06:30:14,773 | INFO     | chi2: 1.6966705828795787
[2025-11-24 07:30:59] 2025-11-24 06:30:14,773 | INFO     | current chi2=1.6966705828795787 (change=-0.058278611046735845 %)
[2025-11-24 07:30:59] 2025-11-24 06:30:14,773 | INFO     | right removable region: 121
[2025-11-24 07:30:59] 2025-11-24 06:30:14,773 | INFO     | sum of square deviations: 563026370.5
[2025-11-24 07:30:59] 2025-11-24 06:30:14,774 | INFO     | sum of deviations: -34104152883.50002
[2025-11-24 07:30:59] 2025-11-24 06:30:14,774 | INFO     | mean x: 1763962066.5
[2025-11-24 07:30:59] 2025-11-24 06:30:14,774 | INFO     | mean y: 2962342.7622950817
[2025-11-24 07:30:59] 2025-11-24 06:30:14,774 | INFO     | intersect: 106851300446.68886
[2025-11-24 07:30:59] 2025-11-24 06:30:14,775 | INFO     | chi2: 0.23224966580573958
[2025-11-24 07:30:59] 2025-11-24 06:30:14,775 | INFO     | current chi2=0.23224966580573958 (change=86.3034686856697 %)
[2025-11-24 07:30:59] 2025-11-24 06:30:14,775 | INFO     | sum of square deviations: 496597218.0
[2025-11-24 07:30:59] 2025-11-24 06:30:14,776 | INFO     | sum of deviations: -35220929446.00001
[2025-11-24 07:30:59] 2025-11-24 06:30:14,776 | INFO     | mean x: 1763962219.0
[2025-11-24 07:30:59] 2025-11-24 06:30:14,776 | INFO     | mean y: 2964691.2393162395
[2025-11-24 07:30:59] 2025-11-24 06:30:14,776 | INFO     | intersect: 125111174340.55035
[2025-11-24 07:30:59] 2025-11-24 06:30:14,776 | INFO     | chi2: 0.15959026037594795
[2025-11-24 07:30:59] 2025-11-24 06:30:14,776 | INFO     | current chi2=0.15959026037594795 (change=31.2850419731351 %)
[2025-11-24 07:30:59] 2025-11-24 06:30:14,776 | INFO     | sum of square deviations: 435610028.0
[2025-11-24 07:30:59] 2025-11-24 06:30:14,777 | INFO     | sum of deviations: -31600326418.000008
[2025-11-24 07:30:59] 2025-11-24 06:30:14,777 | INFO     | mean x: 1763962371.5
[2025-11-24 07:30:59] 2025-11-24 06:30:14,777 | INFO     | mean y: 2955617.6964285714
[2025-11-24 07:30:59] 2025-11-24 06:30:14,777 | INFO     | intersect: 127965544046.60513
[2025-11-24 07:30:59] 2025-11-24 06:30:14,778 | INFO     | chi2: 0.15870204152093154
[2025-11-24 07:30:59] 2025-11-24 06:30:14,778 | INFO     | current chi2=0.15870204152093154 (change=0.5565620689658826 %)
[2025-11-24 07:30:59] 2025-11-24 06:30:14,778 | INFO     | left removable region: 30
[2025-11-24 07:30:59] 2025-11-24 06:30:14,778 | INFO     | sum of square deviations: 233641590.0
[2025-11-24 07:30:59] 2025-11-24 06:30:14,779 | INFO     | sum of deviations: -16964907823.0
[2025-11-24 07:30:59] 2025-11-24 06:30:14,779 | INFO     | mean x: 1763962646.0
[2025-11-24 07:30:59] 2025-11-24 06:30:14,779 | INFO     | mean y: 2921608.0659340657
[2025-11-24 07:30:59] 2025-11-24 06:30:14,779 | INFO     | intersect: 128085698705.26503
[2025-11-24 07:30:59] 2025-11-24 06:30:14,779 | INFO     | chi2: 0.144339550463123
[2025-11-24 07:30:59] 2025-11-24 06:30:14,779 | INFO     | current memory leak: -72.61 B/s (using 91 data points, chi2=0.14)
[2025-11-24 07:30:59] 2025-11-24 06:30:14,780 | INFO     | could have reported an average CPU frequency of 2745 MHz (8 samples)
[2025-11-24 07:30:59] 2025-11-24 06:30:14,780 | INFO     | ..............................
[2025-11-24 07:30:59] 2025-11-24 06:30:14,780 | INFO     | . Timing measurements:
[2025-11-24 07:30:59] 2025-11-24 06:30:14,780 | INFO     | . get job = 0 s
[2025-11-24 07:30:59] 2025-11-24 06:30:14,780 | INFO     | . initial setup = 1 s
[2025-11-24 07:30:59] 2025-11-24 06:30:14,780 | INFO     | . payload setup = 7 s
[2025-11-24 07:30:59] 2025-11-24 06:30:14,780 | INFO     | . stage-in = 0 s
[2025-11-24 07:30:59] 2025-11-24 06:30:14,780 | INFO     | . payload execution = 7740 s
[2025-11-24 07:30:59] 2025-11-24 06:30:14,780 | INFO     | . stage-out = 0 s
[2025-11-24 07:30:59] 2025-11-24 06:30:14,780 | INFO     | . log creation = 0 s
[2025-11-24 07:30:59] 2025-11-24 06:30:14,781 | INFO     | ..............................
[2025-11-24 07:30:59] 2025-11-24 06:30:14,876 | INFO     | 
[2025-11-24 07:30:59] 2025-11-24 06:30:14,877 | INFO     | job summary report
[2025-11-24 07:30:59] 2025-11-24 06:30:14,877 | INFO     | --------------------------------------------------
[2025-11-24 07:30:59] 2025-11-24 06:30:14,877 | INFO     | PanDA job id: 6894052046
[2025-11-24 07:30:59] 2025-11-24 06:30:14,877 | INFO     | task id: 47523659
[2025-11-24 07:30:59] 2025-11-24 06:30:14,877 | INFO     | errors: (none)
[2025-11-24 07:30:59] 2025-11-24 06:30:14,877 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 07:30:59] 2025-11-24 06:30:14,877 | INFO     | pilot state: finished 
[2025-11-24 07:30:59] 2025-11-24 06:30:14,877 | INFO     | transexitcode: 0
[2025-11-24 07:30:59] 2025-11-24 06:30:14,877 | INFO     | exeerrorcode: 0
[2025-11-24 07:30:59] 2025-11-24 06:30:14,877 | INFO     | exeerrordiag: 
[2025-11-24 07:30:59] 2025-11-24 06:30:14,877 | INFO     | exitcode: 0
[2025-11-24 07:30:59] 2025-11-24 06:30:14,878 | INFO     | exitmsg: OK
[2025-11-24 07:30:59] 2025-11-24 06:30:14,878 | INFO     | cpuconsumptiontime: 85674 s
[2025-11-24 07:30:59] 2025-11-24 06:30:14,878 | INFO     | nevents: 400
[2025-11-24 07:30:59] 2025-11-24 06:30:14,878 | INFO     | neventsw: 0
[2025-11-24 07:30:59] 2025-11-24 06:30:14,878 | INFO     | pid: 3251010
[2025-11-24 07:30:59] 2025-11-24 06:30:14,878 | INFO     | pgrp: 3251010
[2025-11-24 07:30:59] 2025-11-24 06:30:14,878 | INFO     | corecount: 12
[2025-11-24 07:30:59] 2025-11-24 06:30:14,878 | INFO     | event service: False
[2025-11-24 07:30:59] 2025-11-24 06:30:14,878 | INFO     | sizes: {0: 2298441, 6: 2298703, 11: 2298731, 7751: 2326343, 7752: 2335399, 7758: 2335537}
[2025-11-24 07:30:59] 2025-11-24 06:30:14,878 | INFO     | --------------------------------------------------
[2025-11-24 07:30:59] 2025-11-24 06:30:14,878 | INFO     | 
[2025-11-24 07:30:59] 2025-11-24 06:30:14,878 | INFO     | executing command: ls -lF /scratch/.boinc/slots/0
[2025-11-24 07:30:59] 2025-11-24 06:30:14,902 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 07:30:59] 2025-11-24 06:30:14,903 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 07:30:59] 2025-11-24 06:30:14,903 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 07:30:59] 2025-11-24 06:30:14,903 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 07:30:59] 2025-11-24 06:30:14,903 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 07:30:59] 2025-11-24 06:30:14,903 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 07:30:59] 2025-11-24 06:30:14,903 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 07:30:59] 2025-11-24 06:30:14,903 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 07:30:59] 2025-11-24 06:30:14,903 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 07:30:59] 2025-11-24 06:30:14,903 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 07:30:59] 2025-11-24 06:30:14,903 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 07:30:59] 2025-11-24 06:30:14,904 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 07:30:59] 2025-11-24 06:30:14,904 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 07:30:59] 2025-11-24 06:30:14,904 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 07:30:59] 2025-11-24 06:30:14,904 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 07:30:59] 2025-11-24 06:30:14,904 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 07:30:59] 2025-11-24 06:30:14,904 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 07:30:59] 2025-11-24 06:30:14,904 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 07:30:59] 2025-11-24 06:30:14,904 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 07:30:59] 2025-11-24 06:30:14,904 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 07:30:59] 2025-11-24 06:30:14,904 | INFO     | job 6894052046 has completed (purged errors)
[2025-11-24 07:30:59] 2025-11-24 06:30:14,905 | INFO     | overall cleanup function is called
[2025-11-24 07:30:59] 2025-11-24 06:30:15,910 | INFO     | --- collectZombieJob: --- 10, [3251010]
[2025-11-24 07:30:59] 2025-11-24 06:30:15,910 | INFO     | zombie collector waiting for pid 3251010
[2025-11-24 07:30:59] 2025-11-24 06:30:15,910 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 07:30:59] 2025-11-24 06:30:15,910 | INFO     | collected zombie processes
[2025-11-24 07:30:59] 2025-11-24 06:30:15,911 | INFO     | will attempt to kill all subprocesses of pid=3251010
[2025-11-24 07:30:59] 2025-11-24 06:30:16,288 | INFO     | process IDs to be killed: [3251010] (in reverse order)
[2025-11-24 07:30:59] 2025-11-24 06:30:16,411 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 07:30:59] 2025-11-24 06:30:16,411 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 07:30:59] 2025-11-24 06:30:16,424 | INFO     | did not find any defunct processes belonging to 3251010
[2025-11-24 07:30:59] 2025-11-24 06:30:16,435 | INFO     | did not find any defunct processes belonging to 3251010
[2025-11-24 07:30:59] 2025-11-24 06:30:16,436 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 07:30:59] 2025-11-24 06:30:16,437 | INFO     | ready for new job
[2025-11-24 07:30:59] 2025-11-24 06:30:16,437 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 07:30:59] 2025-11-24 06:30:16,439 | INFO     | ***************************************
[2025-11-24 07:30:59] 2025-11-24 06:30:16,439 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 07:30:59] 2025-11-24 06:30:16,439 | INFO     | ***************************************
[2025-11-24 07:30:59] 2025-11-24 06:30:16,439 | INFO     | 
[2025-11-24 07:30:59] 2025-11-24 06:30:16,445 | INFO     | architecture information:
[2025-11-24 07:30:59] 2025-11-24 06:30:16,445 | INFO     | executing command: cat /etc/os-release
[2025-11-24 07:30:59] 2025-11-24 06:30:16,468 | INFO     | cat /etc/os-release:
[2025-11-24 07:30:59] NAME="CentOS Linux"
[2025-11-24 07:30:59] VERSION="7 (Core)"
[2025-11-24 07:30:59] ID="centos"
[2025-11-24 07:30:59] ID_LIKE="rhel fedora"
[2025-11-24 07:30:59] VERSION_ID="7"
[2025-11-24 07:30:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 07:30:59] ANSI_COLOR="0;31"
[2025-11-24 07:30:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 07:30:59] HOME_URL="https://www.centos.org/"
[2025-11-24 07:30:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 07:30:59] 
[2025-11-24 07:30:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 07:30:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 07:30:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 07:30:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 07:30:59] 
[2025-11-24 07:30:59] 2025-11-24 06:30:16,468 | INFO     | ***************************************
[2025-11-24 07:30:59] 2025-11-24 06:30:16,971 | INFO     | executing command: df -mP /scratch/.boinc/slots/0
[2025-11-24 07:30:59] 2025-11-24 06:30:16,995 | INFO     | sufficient remaining disk space (1675185094656 B)
[2025-11-24 07:30:59] 2025-11-24 06:30:16,995 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 07:30:59] 2025-11-24 06:30:16,996 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 07:30:59] 2025-11-24 06:30:16,996 | INFO     | update_server=False
[2025-11-24 07:30:59] 2025-11-24 06:30:16,996 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 07:30:59] 2025-11-24 06:30:16,996 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 07:30:59] 2025-11-24 06:30:16,996 | INFO     | aborting loop
[2025-11-24 07:30:59] 2025-11-24 06:30:17,422 | INFO     | all data control threads have been joined
[2025-11-24 07:30:59] 2025-11-24 06:30:17,444 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 07:30:59] 2025-11-24 06:30:17,536 | INFO     | all payload control threads have been joined
[2025-11-24 07:30:59] 2025-11-24 06:30:17,858 | INFO     | all job control threads have been joined
[2025-11-24 07:30:59] 2025-11-24 06:30:18,001 | INFO     | [job] retrieve thread has finished
[2025-11-24 07:30:59] 2025-11-24 06:30:18,002 | INFO     | [job] job monitor thread has finished
[2025-11-24 07:30:59] 2025-11-24 06:30:18,355 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 07:30:59] 2025-11-24 06:30:18,427 | INFO     | [data] control thread has finished
[2025-11-24 07:30:59] 2025-11-24 06:30:18,505 | INFO     | [data] copytool_in thread has finished
[2025-11-24 07:30:59] 2025-11-24 06:30:18,539 | INFO     | [job] validate thread has finished
[2025-11-24 07:30:59] 2025-11-24 06:30:18,541 | INFO     | [payload] control thread has finished
[2025-11-24 07:30:59] 2025-11-24 06:30:18,751 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 07:30:59] 2025-11-24 06:30:18,786 | INFO     | [payload] failed_post thread has finished
[2025-11-24 07:30:59] 2025-11-24 06:30:18,863 | INFO     | [job] control thread has finished
[2025-11-24 07:30:59] 2025-11-24 06:30:19,046 | INFO     | [payload] validate_post thread has finished
[2025-11-24 07:30:59] 2025-11-24 06:30:19,076 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 07:30:59] 2025-11-24 06:30:19,449 | INFO     | [data] copytool_out thread has finished
[2025-11-24 07:30:59] 2025-11-24 06:30:19,883 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 07:30:59] 2025-11-24 06:30:20,025 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 07:30:59] 2025-11-24 06:30:20,888 | INFO     | [job] queue monitor thread has finished
[2025-11-24 07:30:59] 2025-11-24 06:30:24,033 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 07:30:59] 2025-11-24 06:30:27,848 | INFO     | job.realtimelogging is not enabled
[2025-11-24 07:30:59] 2025-11-24 06:30:28,854 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 07:30:59] 2025-11-24 06:30:46,769 | INFO     | PID=3243595 has CPU usage=7.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 07:30:59] 2025-11-24 06:30:46,769 | INFO     | .. there are 8 such processes running
[2025-11-24 07:30:59] 2025-11-24 06:30:46,769 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 07:30:59] 2025-11-24 06:30:46,769 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 07:30:59] 2025-11-24 06:30:46,769 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 07:30:59] 2025-11-24 06:30:52,953 | INFO     | [monitor] cgroup control has ended
[2025-11-24 07:30:59] 2025-11-24 06:30:53,958 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140001042134848)>', '<ExcThread(monitor, started 140000557524736)>']
[2025-11-24 07:30:59] 2025-11-24 06:30:54,810 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 07:30:59] 2025-11-24 06:30:54,810 | INFO     | [monitor] control thread has ended
[2025-11-24 07:30:59] 2025-11-24 06:30:58,960 | INFO     | all workflow threads have been joined
[2025-11-24 07:30:59] 2025-11-24 06:30:58,960 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 07:30:59] 2025-11-24 06:30:58,960 | INFO     | traces error code: 0
[2025-11-24 07:30:59] 2025-11-24 06:30:58,961 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 07:30:59] 2025-11-24 06:30:59,085 [wrapper] ==== pilot stdout END ====
[2025-11-24 07:30:59] 2025-11-24 06:30:59,088 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 07:30:59] 2025-11-24 06:30:59,092 [wrapper] pilotpid: 3243595
[2025-11-24 07:30:59] 2025-11-24 06:30:59,096 [wrapper] Pilot exit status: 0
[2025-11-24 07:30:59] 2025-11-24 06:30:59,109 [wrapper] pandaids: 6894052046
[2025-11-24 07:30:59] 2025-11-24 06:30:59,193 [wrapper] cleanup supervisor_pilot 3440294 3243596
[2025-11-24 07:30:59] 2025-11-24 06:30:59,197 [wrapper] Test setup, not cleaning
[2025-11-24 07:30:59] 2025-11-24 06:30:59,200 [wrapper] apfmon messages muted
[2025-11-24 07:30:59] 2025-11-24 06:30:59,204 [wrapper] ==== wrapper stdout END ====
[2025-11-24 07:30:59] 2025-11-24 06:30:59,207 [wrapper] ==== wrapper stderr END ====
[2025-11-24 07:30:59]  *** Error codes and diagnostics ***
[2025-11-24 07:30:59]     "exeErrorCode": 0,
[2025-11-24 07:30:59]     "exeErrorDiag": "",
[2025-11-24 07:30:59]     "pilotErrorCode": 0,
[2025-11-24 07:30:59]     "pilotErrorDiag": "",
[2025-11-24 07:30:59]  *** Listing of results directory ***
[2025-11-24 07:30:59] total 609304
[2025-11-24 07:30:59] -rw-r--r-- 1 boinc boinc    576529 Nov 21 22:26 pilot3.tar.gz
[2025-11-24 07:30:59] -rwx------ 1 boinc boinc     36292 Nov 21 22:47 runpilot2-wrapper.sh
[2025-11-24 07:30:59] -rw-r--r-- 1 boinc boinc      5112 Nov 21 22:47 queuedata.json
[2025-11-24 07:30:59] -rw-r--r-- 1 boinc boinc       100 Nov 24 05:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 07:30:59] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 05:20 run_atlas
[2025-11-24 07:30:59] -rw-r--r-- 1 boinc boinc       105 Nov 24 05:20 job.xml
[2025-11-24 07:30:59] -rw-r--r-- 2 boinc boinc 303862315 Nov 24 05:20 EVNT.47523657._000001.pool.root.1
[2025-11-24 07:30:59] -rw-r--r-- 1 boinc boinc      6665 Nov 24 05:20 init_data.xml
[2025-11-24 07:30:59] -rw-r--r-- 2 boinc boinc     15847 Nov 24 05:20 start_atlas.sh
[2025-11-24 07:30:59] drwxrwx--x 2 boinc boinc      4096 Nov 24 05:20 shared
[2025-11-24 07:30:59] -rw-r--r-- 2 boinc boinc    589941 Nov 24 05:20 input.tar.gz
[2025-11-24 07:30:59] -rw-r--r-- 1 boinc boinc         0 Nov 24 05:20 boinc_lockfile
[2025-11-24 07:30:59] -rw-r--r-- 1 boinc boinc      2612 Nov 24 05:20 pandaJob.out
[2025-11-24 07:30:59] -rw------- 1 boinc boinc    989786 Nov 24 05:20 agis_schedconf.cvmfs.json
[2025-11-24 07:30:59] -rw------- 1 boinc boinc   1526164 Nov 24 05:20 agis_ddmendpoints.agis.ALL.json
[2025-11-24 07:30:59] drwx------ 5 boinc boinc      4096 Nov 24 05:20 pilot3
[2025-11-24 07:30:59] -rw------- 1 boinc boinc 313073269 Nov 24 07:29 HITS.47523659._000020.pool.root.1
[2025-11-24 07:30:59] -rw-r--r-- 1 boinc boinc       530 Nov 24 07:29 boinc_task_state.xml
[2025-11-24 07:30:59] -rw------- 1 boinc boinc      1020 Nov 24 07:30 memory_monitor_summary.json
[2025-11-24 07:30:59] -rw------- 1 boinc boinc        95 Nov 24 07:30 pilot_heartbeat.json
[2025-11-24 07:30:59] -rw------- 1 boinc boinc    442003 Nov 24 07:30 log.47523659._000020.job.log.tgz.1
[2025-11-24 07:30:59] -rw------- 1 boinc boinc      7770 Nov 24 07:30 heartbeat.json
[2025-11-24 07:30:59] -rw-r--r-- 1 boinc boinc      8192 Nov 24 07:30 boinc_mmap_file
[2025-11-24 07:30:59] -rw-r--r-- 1 boinc boinc        27 Nov 24 07:30 wrapper_checkpoint.txt
[2025-11-24 07:30:59] -rw------- 1 boinc boinc      4898 Nov 24 07:30 pilotlog.txt
[2025-11-24 07:30:59] -rw------- 1 boinc boinc   1097553 Nov 24 07:30 log.47523659._000020.job.log.1
[2025-11-24 07:30:59] -rw------- 1 boinc boinc       357 Nov 24 07:30 output.list
[2025-11-24 07:30:59] -rw-r--r-- 1 boinc boinc       620 Nov 24 07:30 runtime_log
[2025-11-24 07:30:59] -rw------- 1 boinc boinc   1556480 Nov 24 07:30 result.tar.gz
[2025-11-24 07:30:59] -rw-r--r-- 1 boinc boinc      8880 Nov 24 07:30 runtime_log.err
[2025-11-24 07:30:59] -rw------- 1 boinc boinc       666 Nov 24 07:30 mrWLDmq9ng8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmHpHKDmEkXD1m.diag
[2025-11-24 07:30:59] -rw-r--r-- 1 boinc boinc     21167 Nov 24 07:30 stderr.txt
[2025-11-24 07:30:59] HITS file was successfully produced:
[2025-11-24 07:30:59] -rw------- 1 boinc boinc 313073269 Nov 24 07:29 shared/HITS.pool.root.1
[2025-11-24 07:30:59]  *** Contents of shared directory: ***
[2025-11-24 07:30:59] total 604604
[2025-11-24 07:30:59] -rw-r--r-- 2 boinc boinc 303862315 Nov 24 05:20 ATLAS.root_0
[2025-11-24 07:30:59] -rw-r--r-- 2 boinc boinc     15847 Nov 24 05:20 start_atlas.sh
[2025-11-24 07:30:59] -rw-r--r-- 2 boinc boinc    589941 Nov 24 05:20 input.tar.gz
[2025-11-24 07:30:59] -rw------- 1 boinc boinc 313073269 Nov 24 07:29 HITS.pool.root.1
[2025-11-24 07:30:59] -rw------- 1 boinc boinc   1556480 Nov 24 07:30 result.tar.gz
07:31:00 (3239366): run_atlas exited; CPU time 85870.592477
07:31:00 (3239366): called boinc_finish(0)

</stderr_txt>
]]>

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