Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:38:56 (32080): wrapper (7.7.26015): starting
01:38:56 (32080): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 01:38:56] Arguments: --nthreads 8
[2025-11-26 01:38:56] Threads: 8
[2025-11-26 01:38:56] Checking for CVMFS
[2025-11-26 01:38:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 01:38:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 01:38:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 01:38:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 01:38:57] 2.11.2.0 10662 82386 92508 153303 0 277 13992634 25165825 3729 130560 15 26437843 99.885 16898909 1840 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 01:38:57] CVMFS is ok
[2025-11-26 01:38:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 01:38:57] Checking for apptainer binary...
[2025-11-26 01:38:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 01:38:57] Running /usr/bin/apptainer --version
[2025-11-26 01:38:57] apptainer version 1.3.2-1.el7
[2025-11-26 01:38:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 01:38:58] cg-vwn346.simple-grid.lan
[2025-11-26 01:38:58] apptainer works
[2025-11-26 01:38:58] Set ATHENA_PROC_NUMBER=8
[2025-11-26 01:38:58] Set ATHENA_CORE_NUMBER=8
[2025-11-26 01:38:58] Starting ATLAS job with PandaID=6895338356
[2025-11-26 01:38:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 01:40:57]  *** The last 200 lines of the pilot log: ***
[2025-11-27 01:40:57] 2025-11-27 00:39:57,755 | INFO     | monitor loop #5753: job 0:6895338356 is in state 'finished'
[2025-11-27 01:40:57] 2025-11-27 00:39:57,755 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:40:57] 2025-11-27 00:39:58,737 | INFO     | time since job start (86440s) is within the limit (172800.0s)
[2025-11-27 01:40:57] 2025-11-27 00:40:00,269 | INFO     | monitor loop #5754: job 0:6895338356 is in state 'finished'
[2025-11-27 01:40:57] 2025-11-27 00:40:00,269 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:40:57] 2025-11-27 00:40:00,744 | INFO     | time since job start (86442s) is within the limit (172800.0s)
[2025-11-27 01:40:57] 2025-11-27 00:40:02,751 | INFO     | time since job start (86444s) is within the limit (172800.0s)
[2025-11-27 01:40:57] 2025-11-27 00:40:02,778 | INFO     | monitor loop #5755: job 0:6895338356 is in state 'finished'
[2025-11-27 01:40:57] 2025-11-27 00:40:02,778 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:40:57] 2025-11-27 00:40:03,973 | INFO     | PID=3433 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 01:40:57] 2025-11-27 00:40:03,973 | INFO     | .. there are 9 such processes running
[2025-11-27 01:40:57] 2025-11-27 00:40:04,975 | INFO     | time since job start (86446s) is within the limit (172800.0s)
[2025-11-27 01:40:57] 2025-11-27 00:40:05,285 | INFO     | monitor loop #5756: job 0:6895338356 is in state 'finished'
[2025-11-27 01:40:57] 2025-11-27 00:40:05,285 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:40:57] 2025-11-27 00:40:06,679 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 01:40:57] 2025-11-27 00:40:06,680 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 01:40:57] 2025-11-27 00:40:06,682 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6895338356/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 01:40:57] 2025-11-27 00:40:06,682 | INFO     | extracted standard info from prmon json
[2025-11-27 01:40:57] 2025-11-27 00:40:06,683 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 01:40:57] 2025-11-27 00:40:06,683 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 01:40:57] 2025-11-27 00:40:06,709 | INFO     | fitting pss+swap vs Time
[2025-11-27 01:40:57] 2025-11-27 00:40:06,712 | INFO     | sum of square deviations: 878509480147.3464
[2025-11-27 01:40:57] 2025-11-27 00:40:06,772 | INFO     | sum of deviations: 2292589422100.4155
[2025-11-27 01:40:57] 2025-11-27 00:40:06,772 | INFO     | mean x: 1764160764.0982332
[2025-11-27 01:40:57] 2025-11-27 00:40:06,773 | INFO     | mean y: 2853855.7236749115
[2025-11-27 01:40:57] 2025-11-27 00:40:06,773 | INFO     | intersect: -4600962492.368369
[2025-11-27 01:40:57] 2025-11-27 00:40:06,774 | INFO     | chi2: 16.79691280942747
[2025-11-27 01:40:57] 2025-11-27 00:40:06,776 | INFO     | sum of square deviations: 869229975463.7949
[2025-11-27 01:40:57] 2025-11-27 00:40:06,838 | INFO     | sum of deviations: 2771470189249.1074
[2025-11-27 01:40:57] 2025-11-27 00:40:06,838 | INFO     | mean x: 1764160611.6021276
[2025-11-27 01:40:57] 2025-11-27 00:40:06,838 | INFO     | mean y: 2861724.429787234
[2025-11-27 01:40:57] 2025-11-27 00:40:06,838 | INFO     | intersect: -5622023153.1240225
[2025-11-27 01:40:57] 2025-11-27 00:40:06,840 | INFO     | chi2: 13.42563771202692
[2025-11-27 01:40:57] 2025-11-27 00:40:06,841 | INFO     | current chi2=13.42563771202692 (change=20.07080191252992 %)
[2025-11-27 01:40:57] 2025-11-27 00:40:06,841 | INFO     | right removable region: 1409
[2025-11-27 01:40:57] 2025-11-27 00:40:06,843 | INFO     | sum of square deviations: 869229027523.7927
[2025-11-27 01:40:57] 2025-11-27 00:40:06,910 | INFO     | sum of deviations: 1833324226671.9453
[2025-11-27 01:40:57] 2025-11-27 00:40:06,911 | INFO     | mean x: 1764160916.6021276
[2025-11-27 01:40:57] 2025-11-27 00:40:06,911 | INFO     | mean y: 2861400.35106383
[2025-11-27 01:40:57] 2025-11-27 00:40:06,911 | INFO     | intersect: -3717997942.517506
[2025-11-27 01:40:57] 2025-11-27 00:40:06,913 | INFO     | chi2: 14.083822492611006
[2025-11-27 01:40:57] 2025-11-27 00:40:06,913 | INFO     | current chi2=14.083822492611006 (change=16.152315295068455 %)
[2025-11-27 01:40:57] 2025-11-27 00:40:06,913 | INFO     | left removable region: 10
[2025-11-27 01:40:57] 2025-11-27 00:40:06,915 | INFO     | sum of square deviations: 849043949241.485
[2025-11-27 01:40:57] 2025-11-27 00:40:06,973 | INFO     | sum of deviations: 2243007282697.357
[2025-11-27 01:40:57] 2025-11-27 00:40:06,973 | INFO     | mean x: 1764160886.108649
[2025-11-27 01:40:57] 2025-11-27 00:40:06,973 | INFO     | mean y: 2873863.4910650463
[2025-11-27 01:40:57] 2025-11-27 00:40:06,974 | INFO     | intersect: -4657692552.330674
[2025-11-27 01:40:57] 2025-11-27 00:40:06,975 | INFO     | chi2: 9.554821378481584
[2025-11-27 01:40:57] 2025-11-27 00:40:06,975 | INFO     | current memory leak: 2.64 B/s (using 1399 data points, chi2=9.55)
[2025-11-27 01:40:57] 2025-11-27 00:40:06,977 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-11-27 01:40:57] 2025-11-27 00:40:06,977 | INFO     | ..............................
[2025-11-27 01:40:57] 2025-11-27 00:40:06,977 | INFO     | . Timing measurements:
[2025-11-27 01:40:57] 2025-11-27 00:40:06,977 | INFO     | . get job = 0 s
[2025-11-27 01:40:57] 2025-11-27 00:40:06,978 | INFO     | . initial setup = 2 s
[2025-11-27 01:40:57] 2025-11-27 00:40:06,978 | INFO     | . payload setup = 25 s
[2025-11-27 01:40:57] 2025-11-27 00:40:06,978 | INFO     | . stage-in = 0 s
[2025-11-27 01:40:57] 2025-11-27 00:40:06,978 | INFO     | . payload execution = 86299 s
[2025-11-27 01:40:57] 2025-11-27 00:40:06,978 | INFO     | . stage-out = 7 s
[2025-11-27 01:40:57] 2025-11-27 00:40:06,978 | INFO     | . log creation = 2 s
[2025-11-27 01:40:57] 2025-11-27 00:40:06,978 | INFO     | ..............................
[2025-11-27 01:40:57] 2025-11-27 00:40:07,004 | INFO     | time since job start (86449s) is within the limit (172800.0s)
[2025-11-27 01:40:57] 2025-11-27 00:40:07,444 | INFO     | 
[2025-11-27 01:40:57] 2025-11-27 00:40:07,444 | INFO     | job summary report
[2025-11-27 01:40:57] 2025-11-27 00:40:07,444 | INFO     | --------------------------------------------------
[2025-11-27 01:40:57] 2025-11-27 00:40:07,444 | INFO     | PanDA job id: 6895338356
[2025-11-27 01:40:57] 2025-11-27 00:40:07,444 | INFO     | task id: 47556137
[2025-11-27 01:40:57] 2025-11-27 00:40:07,444 | INFO     | errors: (none)
[2025-11-27 01:40:57] 2025-11-27 00:40:07,444 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 01:40:57] 2025-11-27 00:40:07,444 | INFO     | pilot state: finished 
[2025-11-27 01:40:57] 2025-11-27 00:40:07,445 | INFO     | transexitcode: 0
[2025-11-27 01:40:57] 2025-11-27 00:40:07,445 | INFO     | exeerrorcode: 0
[2025-11-27 01:40:57] 2025-11-27 00:40:07,445 | INFO     | exeerrordiag: 
[2025-11-27 01:40:57] 2025-11-27 00:40:07,445 | INFO     | exitcode: 0
[2025-11-27 01:40:57] 2025-11-27 00:40:07,445 | INFO     | exitmsg: OK
[2025-11-27 01:40:57] 2025-11-27 00:40:07,445 | INFO     | cpuconsumptiontime: 328029 s
[2025-11-27 01:40:57] 2025-11-27 00:40:07,445 | INFO     | nevents: 1000
[2025-11-27 01:40:57] 2025-11-27 00:40:07,445 | INFO     | neventsw: 0
[2025-11-27 01:40:57] 2025-11-27 00:40:07,445 | INFO     | pid: 14912
[2025-11-27 01:40:57] 2025-11-27 00:40:07,445 | INFO     | pgrp: 14912
[2025-11-27 01:40:57] 2025-11-27 00:40:07,445 | INFO     | corecount: 8
[2025-11-27 01:40:57] 2025-11-27 00:40:07,445 | INFO     | event service: False
[2025-11-27 01:40:57] 2025-11-27 00:40:07,446 | INFO     | sizes: {0: 2284037, 1: 2284236, 10: 2284498, 12: 2284526, 86326: 2344706, 86334: 2353886, 86425: 2353854}
[2025-11-27 01:40:57] 2025-11-27 00:40:07,446 | INFO     | --------------------------------------------------
[2025-11-27 01:40:57] 2025-11-27 00:40:07,446 | INFO     | 
[2025-11-27 01:40:57] 2025-11-27 00:40:07,446 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-11-27 01:40:57] 2025-11-27 00:40:07,654 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 01:40:57] 2025-11-27 00:40:07,654 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 01:40:57] 2025-11-27 00:40:07,655 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 01:40:57] 2025-11-27 00:40:07,655 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 01:40:57] 2025-11-27 00:40:07,655 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 01:40:57] 2025-11-27 00:40:07,655 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 01:40:57] 2025-11-27 00:40:07,655 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 01:40:57] 2025-11-27 00:40:07,655 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 01:40:57] 2025-11-27 00:40:07,655 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 01:40:57] 2025-11-27 00:40:07,655 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 01:40:57] 2025-11-27 00:40:07,655 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 01:40:57] 2025-11-27 00:40:07,655 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 01:40:57] 2025-11-27 00:40:07,655 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 01:40:57] 2025-11-27 00:40:07,656 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 01:40:57] 2025-11-27 00:40:07,656 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 01:40:57] 2025-11-27 00:40:07,656 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 01:40:57] 2025-11-27 00:40:07,656 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 01:40:57] 2025-11-27 00:40:07,656 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 01:40:57] 2025-11-27 00:40:07,656 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 01:40:57] 2025-11-27 00:40:07,656 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 01:40:57] 2025-11-27 00:40:07,656 | INFO     | job 6895338356 has completed (purged errors)
[2025-11-27 01:40:57] 2025-11-27 00:40:07,656 | INFO     | overall cleanup function is called
[2025-11-27 01:40:57] 2025-11-27 00:40:08,672 | INFO     | --- collectZombieJob: --- 10, [14912]
[2025-11-27 01:40:57] 2025-11-27 00:40:08,672 | INFO     | zombie collector waiting for pid 14912
[2025-11-27 01:40:57] 2025-11-27 00:40:08,672 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 01:40:57] 2025-11-27 00:40:08,672 | INFO     | collected zombie processes
[2025-11-27 01:40:57] 2025-11-27 00:40:08,672 | INFO     | will attempt to kill all subprocesses of pid=14912
[2025-11-27 01:40:57] 2025-11-27 00:40:08,768 | INFO     | process IDs to be killed: [14912] (in reverse order)
[2025-11-27 01:40:57] 2025-11-27 00:40:09,362 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 01:40:57] 2025-11-27 00:40:09,362 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 01:40:57] 2025-11-27 00:40:09,365 | INFO     | did not find any defunct processes belonging to 14912
[2025-11-27 01:40:57] 2025-11-27 00:40:09,368 | INFO     | did not find any defunct processes belonging to 14912
[2025-11-27 01:40:57] 2025-11-27 00:40:09,397 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 01:40:57] 2025-11-27 00:40:09,397 | INFO     | ready for new job
[2025-11-27 01:40:57] 2025-11-27 00:40:09,397 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 01:40:57] 2025-11-27 00:40:09,402 | INFO     | ***************************************
[2025-11-27 01:40:57] 2025-11-27 00:40:09,403 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 01:40:57] 2025-11-27 00:40:09,403 | INFO     | ***************************************
[2025-11-27 01:40:57] 2025-11-27 00:40:09,403 | INFO     | 
[2025-11-27 01:40:57] 2025-11-27 00:40:09,403 | INFO     | pilot is running in a VM
[2025-11-27 01:40:57] 2025-11-27 00:40:09,403 | INFO     | architecture information:
[2025-11-27 01:40:57] 2025-11-27 00:40:09,412 | INFO     | executing command: cat /etc/os-release
[2025-11-27 01:40:57] 2025-11-27 00:40:09,557 | INFO     | cat /etc/os-release:
[2025-11-27 01:40:57] NAME="CentOS Linux"
[2025-11-27 01:40:57] VERSION="7 (Core)"
[2025-11-27 01:40:57] ID="centos"
[2025-11-27 01:40:57] ID_LIKE="rhel fedora"
[2025-11-27 01:40:57] VERSION_ID="7"
[2025-11-27 01:40:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 01:40:57] ANSI_COLOR="0;31"
[2025-11-27 01:40:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 01:40:57] HOME_URL="https://www.centos.org/"
[2025-11-27 01:40:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 01:40:57] 
[2025-11-27 01:40:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 01:40:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 01:40:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 01:40:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 01:40:57] 
[2025-11-27 01:40:57] 2025-11-27 00:40:09,557 | INFO     | ***************************************
[2025-11-27 01:40:57] 2025-11-27 00:40:10,061 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-11-27 01:40:57] 2025-11-27 00:40:10,343 | INFO     | sufficient remaining disk space (495120809984 B)
[2025-11-27 01:40:57] 2025-11-27 00:40:10,344 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 01:40:57] 2025-11-27 00:40:10,344 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 01:40:57] 2025-11-27 00:40:10,344 | INFO     | update_server=False
[2025-11-27 01:40:57] 2025-11-27 00:40:10,344 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 01:40:57] 2025-11-27 00:40:10,489 | INFO     | all payload control threads have been joined
[2025-11-27 01:40:57] 2025-11-27 00:40:11,000 | INFO     | all data control threads have been joined
[2025-11-27 01:40:57] 2025-11-27 00:40:11,013 | INFO     | all job control threads have been joined
[2025-11-27 01:40:57] 2025-11-27 00:40:11,306 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:40:57] 2025-11-27 00:40:11,306 | INFO     | aborting loop
[2025-11-27 01:40:57] 2025-11-27 00:40:11,350 | INFO     | [job] retrieve thread has finished
[2025-11-27 01:40:57] 2025-11-27 00:40:11,495 | INFO     | [payload] control thread has finished
[2025-11-27 01:40:57] 2025-11-27 00:40:11,536 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 01:40:57] 2025-11-27 00:40:11,740 | INFO     | [data] copytool_in thread has finished
[2025-11-27 01:40:57] 2025-11-27 00:40:11,897 | INFO     | [payload] validate_post thread has finished
[2025-11-27 01:40:57] 2025-11-27 00:40:12,006 | INFO     | [data] control thread has finished
[2025-11-27 01:40:57] 2025-11-27 00:40:12,019 | INFO     | [job] control thread has finished
[2025-11-27 01:40:57] 2025-11-27 00:40:12,103 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 01:40:57] 2025-11-27 00:40:12,111 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:40:57] 2025-11-27 00:40:12,281 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 01:40:57] 2025-11-27 00:40:12,281 | INFO     | [job] validate thread has finished
[2025-11-27 01:40:57] 2025-11-27 00:40:12,312 | INFO     | [job] job monitor thread has finished
[2025-11-27 01:40:57] 2025-11-27 00:40:12,400 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 01:40:57] 2025-11-27 00:40:12,480 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 01:40:57] 2025-11-27 00:40:12,639 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 01:40:57] 2025-11-27 00:40:12,728 | INFO     | [payload] failed_post thread has finished
[2025-11-27 01:40:57] 2025-11-27 00:40:13,117 | INFO     | [job] queue monitor thread has finished
[2025-11-27 01:40:57] 2025-11-27 00:40:13,543 | INFO     | [data] copytool_out thread has finished
[2025-11-27 01:40:57] 2025-11-27 00:40:16,112 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 01:40:57] 2025-11-27 00:40:22,037 [wrapper] supervise_pilot (15 min periods counter: 97)
[2025-11-27 01:40:57] 2025-11-27 00:40:40,196 | INFO     | PID=3433 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 01:40:57] 2025-11-27 00:40:40,196 | INFO     | .. there are 9 such processes running
[2025-11-27 01:40:57] 2025-11-27 00:40:40,197 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 01:40:57] 2025-11-27 00:40:40,197 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 01:40:57] 2025-11-27 00:40:40,197 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 01:40:57] 2025-11-27 00:40:49,035 | INFO     | [monitor] cgroup control has ended
[2025-11-27 01:40:57] 2025-11-27 00:40:50,347 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140694618605376)>', '<ExcThread(monitor, started 140693582370560)>']
[2025-11-27 01:40:57] 2025-11-27 00:40:51,260 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 01:40:57] 2025-11-27 00:40:51,260 | INFO     | [monitor] control thread has ended
[2025-11-27 01:40:57] 2025-11-27 00:40:55,373 | INFO     | all workflow threads have been joined
[2025-11-27 01:40:57] 2025-11-27 00:40:55,373 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 01:40:57] 2025-11-27 00:40:55,373 | INFO     | traces error code: 0
[2025-11-27 01:40:57] 2025-11-27 00:40:55,373 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 01:40:57] 2025-11-27 00:40:55,596 [wrapper] ==== pilot stdout END ====
[2025-11-27 01:40:57] 2025-11-27 00:40:55,644 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 01:40:57] 2025-11-27 00:40:55,703 [wrapper] pilotpid: 3433
[2025-11-27 01:40:57] 2025-11-27 00:40:55,733 [wrapper] Pilot exit status: 0
[2025-11-27 01:40:57] 2025-11-27 00:40:56,138 [wrapper] pandaids: 6895338356
[2025-11-27 01:40:57] 2025-11-27 00:40:56,580 [wrapper] cleanup supervisor_pilot  2954 3434
[2025-11-27 01:40:57] 2025-11-27 00:40:56,602 [wrapper] Test setup, not cleaning
[2025-11-27 01:40:57] 2025-11-27 00:40:56,646 [wrapper] apfmon messages muted
[2025-11-27 01:40:57] 2025-11-27 00:40:56,657 [wrapper] ==== wrapper stdout END ====
[2025-11-27 01:40:57] 2025-11-27 00:40:56,661 [wrapper] ==== wrapper stderr END ====
[2025-11-27 01:40:57]  *** Error codes and diagnostics ***
[2025-11-27 01:40:57]     "exeErrorCode": 0,
[2025-11-27 01:40:57]     "exeErrorDiag": "",
[2025-11-27 01:40:57]     "pilotErrorCode": 0,
[2025-11-27 01:40:57]     "pilotErrorDiag": "",
[2025-11-27 01:40:57]  *** Listing of results directory ***
[2025-11-27 01:40:57] total 1356676
[2025-11-27 01:40:57] -rw-r--r--. 1 boinc boinc    576529 Nov 22 09:29 pilot3.tar.gz
[2025-11-27 01:40:57] -rw-r--r--. 1 boinc boinc      5112 Nov 22 09:38 queuedata.json
[2025-11-27 01:40:57] -rwx------. 1 boinc boinc     36292 Nov 22 09:39 runpilot2-wrapper.sh
[2025-11-27 01:40:57] -rw-r--r--. 1 boinc boinc       100 Nov 26 01:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 01:40:57] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 01:38 run_atlas
[2025-11-27 01:40:57] -rw-r--r--. 1 boinc boinc       105 Nov 26 01:38 job.xml
[2025-11-27 01:40:57] -rw-r--r--. 1 boinc boinc      6392 Nov 26 01:38 init_data.xml
[2025-11-27 01:40:57] -rw-r--r--. 2 boinc boinc 413097382 Nov 26 01:38 EVNT.47483658._000320.pool.root.1
[2025-11-27 01:40:57] -rw-r--r--. 2 boinc boinc     15847 Nov 26 01:38 start_atlas.sh
[2025-11-27 01:40:57] drwxrwx--x. 2 boinc boinc        68 Nov 26 01:38 shared
[2025-11-27 01:40:57] -rw-r--r--. 2 boinc boinc    590108 Nov 26 01:38 input.tar.gz
[2025-11-27 01:40:57] -rw-r--r--. 1 boinc boinc         0 Nov 26 01:38 boinc_lockfile
[2025-11-27 01:40:57] -rw-r--r--. 1 boinc boinc      2781 Nov 26 01:38 pandaJob.out
[2025-11-27 01:40:57] -rw-------. 1 boinc boinc    991877 Nov 26 01:39 agis_schedconf.cvmfs.json
[2025-11-27 01:40:57] drwx------. 5 boinc boinc      4096 Nov 26 01:39 pilot3
[2025-11-27 01:40:57] -rw-r--r--. 1 boinc boinc       533 Nov 27 01:14 boinc_task_state.xml
[2025-11-27 01:40:57] -rw-------. 1 boinc boinc 944238964 Nov 27 01:37 HITS.47556137._003161.pool.root.1
[2025-11-27 01:40:57] -rw-------. 1 boinc boinc      1032 Nov 27 01:38 memory_monitor_summary.json
[2025-11-27 01:40:57] -rw-------. 1 boinc boinc   1516240 Nov 27 01:38 agis_ddmendpoints.agis.ALL.json
[2025-11-27 01:40:57] -rw-------. 1 boinc boinc   2492041 Nov 27 01:38 log.47556137._003161.job.log.tgz.1
[2025-11-27 01:40:57] -rw-------. 1 boinc boinc        95 Nov 27 01:39 pilot_heartbeat.json
[2025-11-27 01:40:57] -rw-------. 1 boinc boinc      7939 Nov 27 01:40 heartbeat.json
[2025-11-27 01:40:57] -rw-r--r--. 1 boinc boinc        29 Nov 27 01:40 wrapper_checkpoint.txt
[2025-11-27 01:40:57] -rw-r--r--. 1 boinc boinc      8192 Nov 27 01:40 boinc_mmap_file
[2025-11-27 01:40:57] -rw-------. 1 boinc boinc      4884 Nov 27 01:40 pilotlog.txt
[2025-11-27 01:40:57] -rw-------. 1 boinc boinc  11502689 Nov 27 01:40 log.47556137._003161.job.log.1
[2025-11-27 01:40:57] -rw-------. 1 boinc boinc       353 Nov 27 01:40 output.list
[2025-11-27 01:40:57] -rw-r--r--. 1 boinc boinc       620 Nov 27 01:40 runtime_log
[2025-11-27 01:40:57] -rw-------. 1 boinc boinc  14018560 Nov 27 01:40 result.tar.gz
[2025-11-27 01:40:57] -rw-r--r--. 1 boinc boinc      8833 Nov 27 01:40 runtime_log.err
[2025-11-27 01:40:57] -rw-------. 1 boinc boinc       662 Nov 27 01:40 BPdNDmRKyg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmU4JKDmguHOkm.diag
[2025-11-27 01:40:57] -rw-r--r--. 1 boinc boinc     21422 Nov 27 01:40 stderr.txt
[2025-11-27 01:40:57] HITS file was successfully produced:
[2025-11-27 01:40:57] -rw-------. 1 boinc boinc 944238964 Nov 27 01:37 shared/HITS.pool.root.1
[2025-11-27 01:40:57]  *** Contents of shared directory: ***
[2025-11-27 01:40:57] total 1339816
[2025-11-27 01:40:57] -rw-r--r--. 2 boinc boinc 413097382 Nov 26 01:38 ATLAS.root_0
[2025-11-27 01:40:57] -rw-r--r--. 2 boinc boinc     15847 Nov 26 01:38 start_atlas.sh
[2025-11-27 01:40:57] -rw-r--r--. 2 boinc boinc    590108 Nov 26 01:38 input.tar.gz
[2025-11-27 01:40:57] -rw-------. 1 boinc boinc 944238964 Nov 27 01:37 HITS.pool.root.1
[2025-11-27 01:40:57] -rw-------. 1 boinc boinc  14018560 Nov 27 01:40 result.tar.gz
01:40:59 (32080): run_atlas exited; CPU time 328618.455099
01:40:59 (32080): called boinc_finish(0)

</stderr_txt>
]]>

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