Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:22:34 (7194): wrapper (7.7.26015): starting
23:22:34 (7194): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 23:22:35] Arguments: --nthreads 8
[2025-11-25 23:22:35] Threads: 8
[2025-11-25 23:22:35] Checking for CVMFS
[2025-11-25 23:22:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 23:22:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 23:22:36] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 23:22:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 23:22:37] 2.11.2.0 17816 189505 135452 153300 2 75 20325985 25165825 4632 130560 13 66275300 99.876 35583238 2337 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 23:22:37] CVMFS is ok
[2025-11-25 23:22:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 23:22:37] Checking for apptainer binary...
[2025-11-25 23:22:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 23:22:37] Running /usr/bin/apptainer --version
[2025-11-25 23:22:37] apptainer version 1.3.2-1.el7
[2025-11-25 23:22:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 23:23:05] cg-vwn410.simple-grid.lan
[2025-11-25 23:23:05] apptainer works
[2025-11-25 23:23:05] Set ATHENA_PROC_NUMBER=8
[2025-11-25 23:23:05] Set ATHENA_CORE_NUMBER=8
[2025-11-25 23:23:05] Starting ATLAS job with PandaID=6894289676
[2025-11-25 23:23:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 23:33:53]  *** The last 200 lines of the pilot log: ***
[2025-11-26 23:33:53] 2025-11-26 22:32:36,656 | INFO     | monitor loop #5844: job 0:6894289676 is in state 'finished'
[2025-11-26 23:33:53] 2025-11-26 22:32:36,656 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:33:53] 2025-11-26 22:32:36,898 | INFO     | time since job start (86723s) is within the limit (172800.0s)
[2025-11-26 23:33:53] 2025-11-26 22:32:38,905 | INFO     | time since job start (86725s) is within the limit (172800.0s)
[2025-11-26 23:33:53] 2025-11-26 22:32:39,161 | INFO     | monitor loop #5845: job 0:6894289676 is in state 'finished'
[2025-11-26 23:33:53] 2025-11-26 22:32:39,161 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:33:53] 2025-11-26 22:32:40,920 | INFO     | time since job start (86727s) is within the limit (172800.0s)
[2025-11-26 23:33:53] 2025-11-26 22:32:41,667 | INFO     | monitor loop #5846: job 0:6894289676 is in state 'finished'
[2025-11-26 23:33:53] 2025-11-26 22:32:41,667 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:33:53] 2025-11-26 22:32:42,134 | INFO     | PID=10991 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 23:33:53] 2025-11-26 22:32:42,135 | INFO     | .. there are 9 such processes running
[2025-11-26 23:33:53] 2025-11-26 22:32:43,139 | INFO     | time since job start (86730s) is within the limit (172800.0s)
[2025-11-26 23:33:53] 2025-11-26 22:32:44,177 | INFO     | monitor loop #5847: job 0:6894289676 is in state 'finished'
[2025-11-26 23:33:53] 2025-11-26 22:32:44,177 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 23:33:53] 2025-11-26 22:32:45,147 | INFO     | time since job start (86732s) is within the limit (172800.0s)
[2025-11-26 23:33:53] 2025-11-26 22:32:46,203 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 23:33:53] 2025-11-26 22:32:46,204 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 23:33:53] 2025-11-26 22:32:46,205 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6894289676/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 23:33:53] 2025-11-26 22:32:46,206 | INFO     | extracted standard info from prmon json
[2025-11-26 23:33:53] 2025-11-26 22:32:46,206 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 23:33:53] 2025-11-26 22:32:46,206 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 23:33:53] 2025-11-26 22:32:46,231 | INFO     | fitting pss+swap vs Time
[2025-11-26 23:33:53] 2025-11-26 22:32:46,233 | INFO     | sum of square deviations: 872932709220.7191
[2025-11-26 23:33:53] 2025-11-26 22:32:46,299 | INFO     | sum of deviations: 3733070023426.054
[2025-11-26 23:33:53] 2025-11-26 22:32:46,299 | INFO     | mean x: 1764153203.6005666
[2025-11-26 23:33:53] 2025-11-26 22:32:46,299 | INFO     | mean y: 2830707.1756373937
[2025-11-26 23:33:53] 2025-11-26 22:32:46,299 | INFO     | intersect: -7541516493.390923
[2025-11-26 23:33:53] 2025-11-26 22:32:46,301 | INFO     | chi2: 25.31362970596532
[2025-11-26 23:33:53] 2025-11-26 22:32:46,303 | INFO     | sum of square deviations: 863692582019.6417
[2025-11-26 23:33:53] 2025-11-26 22:32:46,356 | INFO     | sum of deviations: 4200844574101.5425
[2025-11-26 23:33:53] 2025-11-26 22:32:46,357 | INFO     | mean x: 1764153051.1044776
[2025-11-26 23:33:53] 2025-11-26 22:32:46,357 | INFO     | mean y: 2838426.5813788204
[2025-11-26 23:33:53] 2025-11-26 22:32:46,357 | INFO     | intersect: -8577683077.131606
[2025-11-26 23:33:53] 2025-11-26 22:32:46,359 | INFO     | chi2: 22.08336141004685
[2025-11-26 23:33:53] 2025-11-26 22:32:46,359 | INFO     | current chi2=22.08336141004685 (change=12.760984234344052 %)
[2025-11-26 23:33:53] 2025-11-26 22:32:46,359 | INFO     | right removable region: 1406
[2025-11-26 23:33:53] 2025-11-26 22:32:46,361 | INFO     | sum of square deviations: 863691634079.6418
[2025-11-26 23:33:53] 2025-11-26 22:32:46,428 | INFO     | sum of deviations: 3139766975784.27
[2025-11-26 23:33:53] 2025-11-26 22:32:46,428 | INFO     | mean x: 1764153356.1044776
[2025-11-26 23:33:53] 2025-11-26 22:32:46,428 | INFO     | mean y: 2840497.814498934
[2025-11-26 23:33:53] 2025-11-26 22:32:46,428 | INFO     | intersect: -6410363276.722775
[2025-11-26 23:33:53] 2025-11-26 22:32:46,430 | INFO     | chi2: 20.49586626236732
[2025-11-26 23:33:53] 2025-11-26 22:32:46,430 | INFO     | current chi2=20.49586626236732 (change=19.032290112321046 %)
[2025-11-26 23:33:53] 2025-11-26 22:32:46,430 | INFO     | left removable region: 10
[2025-11-26 23:33:53] 2025-11-26 22:32:46,432 | INFO     | sum of square deviations: 843592438517.1171
[2025-11-26 23:33:53] 2025-11-26 22:32:46,491 | INFO     | sum of deviations: 3191491966510.5845
[2025-11-26 23:33:53] 2025-11-26 22:32:46,491 | INFO     | mean x: 1764153325.6131804
[2025-11-26 23:33:53] 2025-11-26 22:32:46,491 | INFO     | mean y: 2858944.9899713467
[2025-11-26 23:33:53] 2025-11-26 22:32:46,491 | INFO     | intersect: -6671313213.646743
[2025-11-26 23:33:53] 2025-11-26 22:32:46,493 | INFO     | chi2: 12.665366500617992
[2025-11-26 23:33:53] 2025-11-26 22:32:46,493 | INFO     | current memory leak: 3.78 B/s (using 1396 data points, chi2=12.67)
[2025-11-26 23:33:53] 2025-11-26 22:32:46,494 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-11-26 23:33:53] 2025-11-26 22:32:46,494 | INFO     | ..............................
[2025-11-26 23:33:53] 2025-11-26 22:32:46,494 | INFO     | . Timing measurements:
[2025-11-26 23:33:53] 2025-11-26 22:32:46,494 | INFO     | . get job = 0 s
[2025-11-26 23:33:53] 2025-11-26 22:32:46,495 | INFO     | . initial setup = 11 s
[2025-11-26 23:33:53] 2025-11-26 22:32:46,495 | INFO     | . payload setup = 165 s
[2025-11-26 23:33:53] 2025-11-26 22:32:46,495 | INFO     | . stage-in = 0 s
[2025-11-26 23:33:53] 2025-11-26 22:32:46,495 | INFO     | . payload execution = 86257 s
[2025-11-26 23:33:53] 2025-11-26 22:32:46,495 | INFO     | . stage-out = 4 s
[2025-11-26 23:33:53] 2025-11-26 22:32:46,495 | INFO     | . log creation = 1 s
[2025-11-26 23:33:53] 2025-11-26 22:32:46,495 | INFO     | ..............................
[2025-11-26 23:33:53] 2025-11-26 22:32:46,889 | INFO     | 
[2025-11-26 23:33:53] 2025-11-26 22:32:46,889 | INFO     | job summary report
[2025-11-26 23:33:53] 2025-11-26 22:32:46,889 | INFO     | --------------------------------------------------
[2025-11-26 23:33:53] 2025-11-26 22:32:46,889 | INFO     | PanDA job id: 6894289676
[2025-11-26 23:33:53] 2025-11-26 22:32:46,889 | INFO     | task id: 47533967
[2025-11-26 23:33:53] 2025-11-26 22:32:46,890 | INFO     | errors: (none)
[2025-11-26 23:33:53] 2025-11-26 22:32:46,890 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 23:33:53] 2025-11-26 22:32:46,890 | INFO     | pilot state: finished 
[2025-11-26 23:33:53] 2025-11-26 22:32:46,890 | INFO     | transexitcode: 0
[2025-11-26 23:33:53] 2025-11-26 22:32:46,890 | INFO     | exeerrorcode: 0
[2025-11-26 23:33:53] 2025-11-26 22:32:46,890 | INFO     | exeerrordiag: 
[2025-11-26 23:33:53] 2025-11-26 22:32:46,890 | INFO     | exitcode: 0
[2025-11-26 23:33:53] 2025-11-26 22:32:46,890 | INFO     | exitmsg: OK
[2025-11-26 23:33:53] 2025-11-26 22:32:46,890 | INFO     | cpuconsumptiontime: 325007 s
[2025-11-26 23:33:53] 2025-11-26 22:32:46,890 | INFO     | nevents: 1000
[2025-11-26 23:33:53] 2025-11-26 22:32:46,890 | INFO     | neventsw: 0
[2025-11-26 23:33:53] 2025-11-26 22:32:46,890 | INFO     | pid: 17527
[2025-11-26 23:33:53] 2025-11-26 22:32:46,891 | INFO     | pgrp: 17527
[2025-11-26 23:33:53] 2025-11-26 22:32:46,891 | INFO     | corecount: 8
[2025-11-26 23:33:53] 2025-11-26 22:32:46,891 | INFO     | event service: False
[2025-11-26 23:33:53] 2025-11-26 22:32:46,891 | INFO     | sizes: {0: 2283385, 1: 2284070, 2: 2284269, 13: 2284269, 24: 2284325, 35: 2284353, 45: 2284509, 56: 2284537, 67: 2284565, 78: 2284593, 88: 2284649, 99: 2284957, 10
[2025-11-26 23:33:53] 2025-11-26 22:32:46,891 | INFO     | --------------------------------------------------
[2025-11-26 23:33:53] 2025-11-26 22:32:46,891 | INFO     | 
[2025-11-26 23:33:53] 2025-11-26 22:32:46,891 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-26 23:33:53] 2025-11-26 22:32:47,153 | INFO     | time since job start (86734s) is within the limit (172800.0s)
[2025-11-26 23:33:53] 2025-11-26 22:32:47,234 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-26 22:32:47,235 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-26 22:32:47,235 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-26 22:32:47,235 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-26 22:32:47,235 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-26 22:32:47,235 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-26 22:32:47,235 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-26 22:32:47,236 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-26 22:32:47,236 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-26 22:32:47,236 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-26 22:32:47,236 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-26 22:32:47,236 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-26 22:32:47,236 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-26 22:32:47,236 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-26 22:32:47,236 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-26 22:32:47,237 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-26 22:32:47,237 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-26 22:32:47,237 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 23:33:53] 2025-11-26 22:32:47,237 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-26 22:32:47,237 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-26 22:32:47,237 | INFO     | job 6894289676 has completed (purged errors)
[2025-11-26 23:33:53] 2025-11-26 22:32:47,238 | INFO     | overall cleanup function is called
[2025-11-26 23:33:53] 2025-11-26 22:32:48,262 | INFO     | --- collectZombieJob: --- 10, [17527]
[2025-11-26 23:33:53] 2025-11-26 22:32:48,262 | INFO     | zombie collector waiting for pid 17527
[2025-11-26 23:33:53] 2025-11-26 22:32:48,262 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 23:33:53] 2025-11-26 22:32:48,262 | INFO     | collected zombie processes
[2025-11-26 23:33:53] 2025-11-26 22:32:48,262 | INFO     | will attempt to kill all subprocesses of pid=17527
[2025-11-26 23:33:53] 2025-11-26 22:32:48,369 | INFO     | process IDs to be killed: [17527] (in reverse order)
[2025-11-26 23:33:53] 2025-11-26 22:32:49,158 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 23:33:53] 2025-11-26 22:32:49,158 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 23:33:53] 2025-11-26 22:32:49,161 | INFO     | did not find any defunct processes belonging to 17527
[2025-11-26 23:33:53] 2025-11-26 22:32:49,163 | INFO     | did not find any defunct processes belonging to 17527
[2025-11-26 23:33:53] 2025-11-26 22:32:49,189 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 23:33:53] 2025-11-26 22:32:49,189 | INFO     | ready for new job
[2025-11-26 23:33:53] 2025-11-26 22:32:49,190 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 23:33:53] 2025-11-26 22:32:49,195 | INFO     | ***************************************
[2025-11-26 23:33:53] 2025-11-26 22:32:49,195 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 23:33:53] 2025-11-26 22:32:49,195 | INFO     | ***************************************
[2025-11-26 23:33:53] 2025-11-26 22:32:49,195 | INFO     | 
[2025-11-26 23:33:53] 2025-11-26 22:32:49,196 | INFO     | pilot is running in a VM
[2025-11-26 23:33:53] 2025-11-26 22:32:49,196 | INFO     | architecture information:
[2025-11-26 23:33:53] 2025-11-26 22:32:49,204 | INFO     | executing command: cat /etc/os-release
[2025-11-26 23:33:53] 2025-11-26 22:32:49,464 | INFO     | cat /etc/os-release:
[2025-11-26 23:33:53] NAME="CentOS Linux"
[2025-11-26 23:33:53] VERSION="7 (Core)"
[2025-11-26 23:33:53] ID="centos"
[2025-11-26 23:33:53] ID_LIKE="rhel fedora"
[2025-11-26 23:33:53] VERSION_ID="7"
[2025-11-26 23:33:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 23:33:53] ANSI_COLOR="0;31"
[2025-11-26 23:33:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 23:33:53] HOME_URL="https://www.centos.org/"
[2025-11-26 23:33:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 23:33:53] 
[2025-11-26 23:33:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 23:33:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 23:33:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 23:33:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 23:33:53] 
[2025-11-26 23:33:53] 2025-11-26 22:32:49,464 | INFO     | ***************************************
[2025-11-26 23:33:53] 2025-11-26 22:32:49,967 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-26 23:33:53] 2025-11-26 22:32:50,183 | INFO     | sufficient remaining disk space (495637757952 B)
[2025-11-26 23:33:53] 2025-11-26 22:32:50,184 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 23:33:53] 2025-11-26 22:32:50,184 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 23:33:53] 2025-11-26 22:32:50,184 | INFO     | update_server=False
[2025-11-26 23:33:53] 2025-11-26 22:32:50,184 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 23:33:53] 2025-11-26 22:32:50,185 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 23:33:53] 2025-11-26 22:32:50,202 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:33:53] 2025-11-26 22:32:50,202 | INFO     | aborting loop
[2025-11-26 23:33:53] 2025-11-26 22:32:50,715 | INFO     | all data control threads have been joined
[2025-11-26 23:33:53] 2025-11-26 22:32:51,180 | INFO     | all payload control threads have been joined
[2025-11-26 23:33:53] 2025-11-26 22:32:51,190 | INFO     | [job] retrieve thread has finished
[2025-11-26 23:33:53] 2025-11-26 22:32:51,208 | INFO     | [job] job monitor thread has finished
[2025-11-26 23:33:53] 2025-11-26 22:32:51,266 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 23:33:53] 2025-11-26 22:32:51,384 | INFO     | all job control threads have been joined
[2025-11-26 23:33:53] 2025-11-26 22:32:51,387 | INFO     | [payload] failed_post thread has finished
[2025-11-26 23:33:53] 2025-11-26 22:32:51,470 | INFO     | [payload] validate_post thread has finished
[2025-11-26 23:33:53] 2025-11-26 22:32:51,623 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:33:53] 2025-11-26 22:32:51,665 | INFO     | [job] validate thread has finished
[2025-11-26 23:33:53] 2025-11-26 22:32:51,721 | INFO     | [data] control thread has finished
[2025-11-26 23:33:53] 2025-11-26 22:32:51,780 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 23:33:53] 2025-11-26 22:32:51,891 | INFO     | [data] copytool_in thread has finished
[2025-11-26 23:33:53] 2025-11-26 22:32:51,901 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 23:33:53] 2025-11-26 22:32:51,906 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 23:33:53] 2025-11-26 22:32:52,186 | INFO     | [payload] control thread has finished
[2025-11-26 23:33:53] 2025-11-26 22:32:52,390 | INFO     | [job] control thread has finished
[2025-11-26 23:33:53] 2025-11-26 22:32:52,629 | INFO     | [job] queue monitor thread has finished
[2025-11-26 23:33:53] 2025-11-26 22:32:52,656 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 23:33:53] 2025-11-26 22:32:53,272 | INFO     | [data] copytool_out thread has finished
[2025-11-26 23:33:53] 2025-11-26 22:32:54,193 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 23:33:53] 2025-11-26 22:33:20,385 | INFO     | PID=10991 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 23:33:53] 2025-11-26 22:33:20,385 | INFO     | .. there are 9 such processes running
[2025-11-26 23:33:53] 2025-11-26 22:33:20,386 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 23:33:53] 2025-11-26 22:33:20,386 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 23:33:53] 2025-11-26 22:33:20,386 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 23:33:53] 2025-11-26 22:33:44,158 | INFO     | [monitor] cgroup control has ended
[2025-11-26 23:33:53] 2025-11-26 22:33:44,251 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139741772752704)>', '<ExcThread(monitor, started 139741123049216)>']
[2025-11-26 23:33:53] 2025-11-26 22:33:44,528 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 23:33:53] 2025-11-26 22:33:44,528 | INFO     | [monitor] control thread has ended
[2025-11-26 23:33:53] 2025-11-26 22:33:49,277 | INFO     | all workflow threads have been joined
[2025-11-26 23:33:53] 2025-11-26 22:33:49,277 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 23:33:53] 2025-11-26 22:33:49,277 | INFO     | traces error code: 0
[2025-11-26 23:33:53] 2025-11-26 22:33:49,278 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 23:33:53] 2025-11-26 22:33:49,404 [wrapper] ==== pilot stdout END ====
[2025-11-26 23:33:53] 2025-11-26 22:33:49,413 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 23:33:53] 2025-11-26 22:33:49,446 [wrapper] pilotpid: 10991
[2025-11-26 23:33:53] 2025-11-26 22:33:49,478 [wrapper] Pilot exit status: 0
[2025-11-26 23:33:53] 2025-11-26 22:33:49,982 [wrapper] pandaids: 6894289676
[2025-11-26 23:33:53] 2025-11-26 22:33:51,249 [wrapper] cleanup supervisor_pilot  6514 10992
[2025-11-26 23:33:53] 2025-11-26 22:33:51,355 [wrapper] Test setup, not cleaning
[2025-11-26 23:33:53] 2025-11-26 22:33:51,462 [wrapper] apfmon messages muted
[2025-11-26 23:33:53] 2025-11-26 22:33:51,539 [wrapper] ==== wrapper stdout END ====
[2025-11-26 23:33:53] 2025-11-26 22:33:51,626 [wrapper] ==== wrapper stderr END ====
[2025-11-26 23:33:53]  *** Error codes and diagnostics ***
[2025-11-26 23:33:53]     "exeErrorCode": 0,
[2025-11-26 23:33:53]     "exeErrorDiag": "",
[2025-11-26 23:33:53]     "pilotErrorCode": 0,
[2025-11-26 23:33:53]     "pilotErrorDiag": "",
[2025-11-26 23:33:53]  *** Listing of results directory ***
[2025-11-26 23:33:53] total 1336096
[2025-11-26 23:33:53] -rw-r--r--. 1 boinc boinc    576529 Nov 21 12:23 pilot3.tar.gz
[2025-11-26 23:33:53] -rw-r--r--. 1 boinc boinc      5112 Nov 21 12:31 queuedata.json
[2025-11-26 23:33:53] -rwx------. 1 boinc boinc     36292 Nov 21 12:32 runpilot2-wrapper.sh
[2025-11-26 23:33:53] -rw-r--r--. 1 boinc boinc       100 Nov 25 23:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 23:33:53] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 23:22 run_atlas
[2025-11-26 23:33:53] -rw-r--r--. 1 boinc boinc       105 Nov 25 23:22 job.xml
[2025-11-26 23:33:53] -rw-r--r--. 1 boinc boinc      6392 Nov 25 23:22 init_data.xml
[2025-11-26 23:33:53] -rw-r--r--. 2 boinc boinc 408868646 Nov 25 23:22 EVNT.47493127._002410.pool.root.1
[2025-11-26 23:33:53] -rw-r--r--. 2 boinc boinc     15847 Nov 25 23:22 start_atlas.sh
[2025-11-26 23:33:53] drwxrwx--x. 2 boinc boinc        68 Nov 25 23:22 shared
[2025-11-26 23:33:53] -rw-r--r--. 2 boinc boinc    590109 Nov 25 23:22 input.tar.gz
[2025-11-26 23:33:53] -rw-r--r--. 1 boinc boinc         0 Nov 25 23:22 boinc_lockfile
[2025-11-26 23:33:53] -rw-r--r--. 1 boinc boinc      2784 Nov 25 23:23 pandaJob.out
[2025-11-26 23:33:53] -rw-------. 1 boinc boinc    991877 Nov 25 23:27 agis_schedconf.cvmfs.json
[2025-11-26 23:33:53] drwx------. 5 boinc boinc      4096 Nov 25 23:27 pilot3
[2025-11-26 23:33:53] -rw-r--r--. 1 boinc boinc       533 Nov 26 23:07 boinc_task_state.xml
[2025-11-26 23:33:53] -rw-------. 1 boinc boinc 927257266 Nov 26 23:29 HITS.47533967._003813.pool.root.1
[2025-11-26 23:33:53] -rw-------. 1 boinc boinc      1031 Nov 26 23:30 memory_monitor_summary.json
[2025-11-26 23:33:53] -rw-------. 1 boinc boinc   1516240 Nov 26 23:31 agis_ddmendpoints.agis.ALL.json
[2025-11-26 23:33:53] -rw-------. 1 boinc boinc   2496567 Nov 26 23:31 log.47533967._003813.job.log.tgz.1
[2025-11-26 23:33:53] -rw-------. 1 boinc boinc      8629 Nov 26 23:32 heartbeat.json
[2025-11-26 23:33:53] -rw-------. 1 boinc boinc        95 Nov 26 23:33 pilot_heartbeat.json
[2025-11-26 23:33:53] -rw-r--r--. 1 boinc boinc      8192 Nov 26 23:33 boinc_mmap_file
[2025-11-26 23:33:53] -rw-r--r--. 1 boinc boinc        29 Nov 26 23:33 wrapper_checkpoint.txt
[2025-11-26 23:33:53] -rw-------. 1 boinc boinc      4884 Nov 26 23:33 pilotlog.txt
[2025-11-26 23:33:53] -rw-------. 1 boinc boinc  11567325 Nov 26 23:33 log.47533967._003813.job.log.1
[2025-11-26 23:33:53] -rw-------. 1 boinc boinc       353 Nov 26 23:33 output.list
[2025-11-26 23:33:53] -rw-r--r--. 1 boinc boinc       620 Nov 26 23:33 runtime_log
[2025-11-26 23:33:53] -rw-------. 1 boinc boinc  14080000 Nov 26 23:33 result.tar.gz
[2025-11-26 23:33:53] -rw-r--r--. 1 boinc boinc      8817 Nov 26 23:33 runtime_log.err
[2025-11-26 23:33:53] -rw-------. 1 boinc boinc       662 Nov 26 23:33 7MLNDmlYeg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmcZHKDmlpg1To.diag
[2025-11-26 23:33:53] -rw-r--r--. 1 boinc boinc     21501 Nov 26 23:33 stderr.txt
[2025-11-26 23:33:53] HITS file was successfully produced:
[2025-11-26 23:33:53] -rw-------. 1 boinc boinc 927257266 Nov 26 23:29 shared/HITS.pool.root.1
[2025-11-26 23:33:53]  *** Contents of shared directory: ***
[2025-11-26 23:33:53] total 1319164
[2025-11-26 23:33:53] -rw-r--r--. 2 boinc boinc 408868646 Nov 25 23:22 ATLAS.root_0
[2025-11-26 23:33:53] -rw-r--r--. 2 boinc boinc     15847 Nov 25 23:22 start_atlas.sh
[2025-11-26 23:33:53] -rw-r--r--. 2 boinc boinc    590109 Nov 25 23:22 input.tar.gz
[2025-11-26 23:33:53] -rw-------. 1 boinc boinc 927257266 Nov 26 23:29 HITS.pool.root.1
[2025-11-26 23:33:53] -rw-------. 1 boinc boinc  14080000 Nov 26 23:33 result.tar.gz
23:33:55 (7194): run_atlas exited; CPU time 325602.628574
23:33:55 (7194): called boinc_finish(0)

</stderr_txt>
]]>

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