Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:51:56 (2889366): wrapper (7.7.26015): starting
02:51:56 (2889366): wrapper: running run_atlas (--nthreads 9)
[2025-11-23 02:51:56] Arguments: --nthreads 9
[2025-11-23 02:51:56] Threads: 9
[2025-11-23 02:51:56] Checking for CVMFS
[2025-11-23 02:51:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 02:51:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 02:51:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 02:51:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 02:51:56] 2.13.3.0 3025293 4356 91628 153201 3 81 11979671 37030913 1932 16776704 0 4891562 99.886 614770 15680 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 02:51:56] CVMFS is ok
[2025-11-23 02:51:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 02:51:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 02:51:56] Further information can be found at the LHC@home message board.
[2025-11-23 02:51:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 02:51:56] Checking for apptainer binary...
[2025-11-23 02:51:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 02:51:56] Running /usr/bin/apptainer --version
[2025-11-23 02:51:56] apptainer version 1.4.4-1.el9
[2025-11-23 02:51:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 02:51:56] c-205-37.aglt2.org
[2025-11-23 02:51:56] apptainer works
[2025-11-23 02:51:56] Set ATHENA_PROC_NUMBER=9
[2025-11-23 02:51:56] Set ATHENA_CORE_NUMBER=9
[2025-11-23 02:51:56] Starting ATLAS job with PandaID=6895337698
[2025-11-23 02:51:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 11:41:01]  *** The last 200 lines of the pilot log: ***
[2025-11-23 11:41:01] 2025-11-23 16:39:54,461 | INFO     | time since job start (31667s) is within the limit (172800.0s)
[2025-11-23 11:41:01] 2025-11-23 16:39:55,723 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 11:41:01] 2025-11-23 16:39:55,729 | INFO     | found 16 cores (8 cores per socket, 2 sockets) HT, CPU MHz: 2712.4710625
[2025-11-23 11:41:01] 2025-11-23 16:39:55,736 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895337698/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 11:41:01] 2025-11-23 16:39:55,737 | INFO     | extracted standard info from prmon json
[2025-11-23 11:41:01] 2025-11-23 16:39:55,737 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 11:41:01] 2025-11-23 16:39:55,737 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 11:41:01] 2025-11-23 16:39:55,747 | INFO     | fitting pss+swap vs Time
[2025-11-23 11:41:01] 2025-11-23 16:39:55,748 | INFO     | sum of square deviations: 43348457635.4487
[2025-11-23 11:41:01] 2025-11-23 16:39:55,755 | INFO     | sum of deviations: 571960772595.8995
[2025-11-23 11:41:01] 2025-11-23 16:39:55,756 | INFO     | mean x: 1763900150.142582
[2025-11-23 11:41:01] 2025-11-23 16:39:55,756 | INFO     | mean y: 3072425.2986512524
[2025-11-23 11:41:01] 2025-11-23 16:39:55,756 | INFO     | intersect: -23270689726.56508
[2025-11-23 11:41:01] 2025-11-23 16:39:55,757 | INFO     | chi2: 4.694186559802895
[2025-11-23 11:41:01] 2025-11-23 16:39:55,758 | INFO     | sum of square deviations: 42107647637.846375
[2025-11-23 11:41:01] 2025-11-23 16:39:55,765 | INFO     | sum of deviations: 730475614543.7928
[2025-11-23 11:41:01] 2025-11-23 16:39:55,765 | INFO     | mean x: 1763899997.6439688
[2025-11-23 11:41:01] 2025-11-23 16:39:55,765 | INFO     | mean y: 3091885.2392996107
[2025-11-23 11:41:01] 2025-11-23 16:39:55,765 | INFO     | intersect: -30596716155.680115
[2025-11-23 11:41:01] 2025-11-23 16:39:55,766 | INFO     | chi2: 2.187579515814023
[2025-11-23 11:41:01] 2025-11-23 16:39:55,766 | INFO     | current chi2=2.187579515814023 (change=53.3981130075521 %)
[2025-11-23 11:41:01] 2025-11-23 16:39:55,767 | INFO     | sum of square deviations: 40890745065.24155
[2025-11-23 11:41:01] 2025-11-23 16:39:55,774 | INFO     | sum of deviations: 752958130216.966
[2025-11-23 11:41:01] 2025-11-23 16:39:55,774 | INFO     | mean x: 1763899845.1453831
[2025-11-23 11:41:01] 2025-11-23 16:39:55,774 | INFO     | mean y: 3094674.5815324164
[2025-11-23 11:41:01] 2025-11-23 16:39:55,775 | INFO     | intersect: -32477182394.755302
[2025-11-23 11:41:01] 2025-11-23 16:39:55,775 | INFO     | chi2: 1.9179002945378403
[2025-11-23 11:41:01] 2025-11-23 16:39:55,775 | INFO     | current chi2=1.9179002945378403 (change=12.32774485803466 %)
[2025-11-23 11:41:01] 2025-11-23 16:39:55,776 | INFO     | right removable region: 508
[2025-11-23 11:41:01] 2025-11-23 16:39:55,776 | INFO     | sum of square deviations: 42107634034.13233
[2025-11-23 11:41:01] 2025-11-23 16:39:55,783 | INFO     | sum of deviations: 440750244747.0816
[2025-11-23 11:41:01] 2025-11-23 16:39:55,784 | INFO     | mean x: 1763900302.6420233
[2025-11-23 11:41:01] 2025-11-23 16:39:55,784 | INFO     | mean y: 3088501.190661479
[2025-11-23 11:41:01] 2025-11-23 16:39:55,784 | INFO     | intersect: -18460059759.971027
[2025-11-23 11:41:01] 2025-11-23 16:39:55,785 | INFO     | chi2: 2.8570943821802084
[2025-11-23 11:41:01] 2025-11-23 16:39:55,785 | INFO     | current chi2=2.8570943821802084 (change=39.13547436214006 %)
[2025-11-23 11:41:01] 2025-11-23 16:39:55,786 | INFO     | sum of square deviations: 40890686626.53056
[2025-11-23 11:41:01] 2025-11-23 16:39:55,793 | INFO     | sum of deviations: 411365029712.11237
[2025-11-23 11:41:01] 2025-11-23 16:39:55,793 | INFO     | mean x: 1763900455.1434186
[2025-11-23 11:41:01] 2025-11-23 16:39:55,793 | INFO     | mean y: 3092180.10805501
[2025-11-23 11:41:01] 2025-11-23 16:39:55,793 | INFO     | intersect: -17741950102.172794
[2025-11-23 11:41:01] 2025-11-23 16:39:55,794 | INFO     | chi2: 2.8352941089386388
[2025-11-23 11:41:01] 2025-11-23 16:39:55,794 | INFO     | current chi2=2.8352941089386388 (change=0.7630225090756069 %)
[2025-11-23 11:41:01] 2025-11-23 16:39:55,794 | INFO     | left removable region: 20
[2025-11-23 11:41:01] 2025-11-23 16:39:55,795 | INFO     | sum of square deviations: 36035486235.67002
[2025-11-23 11:41:01] 2025-11-23 16:39:55,801 | INFO     | sum of deviations: 555661700479.979
[2025-11-23 11:41:01] 2025-11-23 16:39:55,801 | INFO     | mean x: 1763900424.6454918
[2025-11-23 11:41:01] 2025-11-23 16:39:55,802 | INFO     | mean y: 3119373.12704918
[2025-11-23 11:41:01] 2025-11-23 16:39:55,802 | INFO     | intersect: -27195956088.929
[2025-11-23 11:41:01] 2025-11-23 16:39:55,802 | INFO     | chi2: 0.033321074459975925
[2025-11-23 11:41:01] 2025-11-23 16:39:55,803 | INFO     | current memory leak: 15.42 B/s (using 488 data points, chi2=0.03)
[2025-11-23 11:41:01] 2025-11-23 16:39:55,804 | INFO     | could have reported an average CPU frequency of 2622 MHz (21 samples)
[2025-11-23 11:41:01] 2025-11-23 16:39:55,804 | INFO     | ..............................
[2025-11-23 11:41:01] 2025-11-23 16:39:55,804 | INFO     | . Timing measurements:
[2025-11-23 11:41:01] 2025-11-23 16:39:55,804 | INFO     | . get job = 0 s
[2025-11-23 11:41:01] 2025-11-23 16:39:55,804 | INFO     | . initial setup = 2 s
[2025-11-23 11:41:01] 2025-11-23 16:39:55,804 | INFO     | . payload setup = 5 s
[2025-11-23 11:41:01] 2025-11-23 16:39:55,804 | INFO     | . stage-in = 0 s
[2025-11-23 11:41:01] 2025-11-23 16:39:55,804 | INFO     | . payload execution = 31635 s
[2025-11-23 11:41:01] 2025-11-23 16:39:55,805 | INFO     | . stage-out = 3 s
[2025-11-23 11:41:01] 2025-11-23 16:39:55,805 | INFO     | . log creation = 0 s
[2025-11-23 11:41:01] 2025-11-23 16:39:55,805 | INFO     | ..............................
[2025-11-23 11:41:01] 2025-11-23 16:39:56,363 | INFO     | 
[2025-11-23 11:41:01] 2025-11-23 16:39:56,363 | INFO     | job summary report
[2025-11-23 11:41:01] 2025-11-23 16:39:56,363 | INFO     | --------------------------------------------------
[2025-11-23 11:41:01] 2025-11-23 16:39:56,363 | INFO     | PanDA job id: 6895337698
[2025-11-23 11:41:01] 2025-11-23 16:39:56,363 | INFO     | task id: 47556137
[2025-11-23 11:41:01] 2025-11-23 16:39:56,363 | INFO     | errors: (none)
[2025-11-23 11:41:01] 2025-11-23 16:39:56,364 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 11:41:01] 2025-11-23 16:39:56,364 | INFO     | pilot state: finished 
[2025-11-23 11:41:01] 2025-11-23 16:39:56,364 | INFO     | transexitcode: 0
[2025-11-23 11:41:01] 2025-11-23 16:39:56,364 | INFO     | exeerrorcode: 0
[2025-11-23 11:41:01] 2025-11-23 16:39:56,364 | INFO     | exeerrordiag: 
[2025-11-23 11:41:01] 2025-11-23 16:39:56,364 | INFO     | exitcode: 0
[2025-11-23 11:41:01] 2025-11-23 16:39:56,364 | INFO     | exitmsg: OK
[2025-11-23 11:41:01] 2025-11-23 16:39:56,364 | INFO     | cpuconsumptiontime: 279485 s
[2025-11-23 11:41:01] 2025-11-23 16:39:56,365 | INFO     | nevents: 1000
[2025-11-23 11:41:01] 2025-11-23 16:39:56,365 | INFO     | neventsw: 0
[2025-11-23 11:41:01] 2025-11-23 16:39:56,365 | INFO     | pid: 2899439
[2025-11-23 11:41:01] 2025-11-23 16:39:56,365 | INFO     | pgrp: 2899439
[2025-11-23 11:41:01] 2025-11-23 16:39:56,365 | INFO     | corecount: 9
[2025-11-23 11:41:01] 2025-11-23 16:39:56,365 | INFO     | event service: False
[2025-11-23 11:41:01] 2025-11-23 16:39:56,365 | INFO     | sizes: {0: 2298585, 1: 2298784, 4: 2299046, 11: 2299074, 31644: 2338548, 31648: 2347542, 31650: 2347726, 31654: 2347972}
[2025-11-23 11:41:01] 2025-11-23 16:39:56,365 | INFO     | --------------------------------------------------
[2025-11-23 11:41:01] 2025-11-23 16:39:56,365 | INFO     | 
[2025-11-23 11:41:01] 2025-11-23 16:39:56,366 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-23 11:41:01] 2025-11-23 16:39:56,383 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 11:41:01] 2025-11-23 16:39:56,383 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 11:41:01] 2025-11-23 16:39:56,384 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 11:41:01] 2025-11-23 16:39:56,384 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 11:41:01] 2025-11-23 16:39:56,384 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 11:41:01] 2025-11-23 16:39:56,384 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 11:41:01] 2025-11-23 16:39:56,384 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 11:41:01] 2025-11-23 16:39:56,384 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 11:41:01] 2025-11-23 16:39:56,384 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 11:41:01] 2025-11-23 16:39:56,385 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 11:41:01] 2025-11-23 16:39:56,385 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 11:41:01] 2025-11-23 16:39:56,385 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 11:41:01] 2025-11-23 16:39:56,385 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 11:41:01] 2025-11-23 16:39:56,385 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 11:41:01] 2025-11-23 16:39:56,385 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 11:41:01] 2025-11-23 16:39:56,385 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 11:41:01] 2025-11-23 16:39:56,385 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 11:41:01] 2025-11-23 16:39:56,386 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 11:41:01] 2025-11-23 16:39:56,386 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 11:41:01] 2025-11-23 16:39:56,386 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 11:41:01] 2025-11-23 16:39:56,386 | INFO     | job 6895337698 has completed (purged errors)
[2025-11-23 11:41:01] 2025-11-23 16:39:56,387 | INFO     | overall cleanup function is called
[2025-11-23 11:41:01] 2025-11-23 16:39:57,403 | INFO     | --- collectZombieJob: --- 10, [2899439]
[2025-11-23 11:41:01] 2025-11-23 16:39:57,404 | INFO     | zombie collector waiting for pid 2899439
[2025-11-23 11:41:01] 2025-11-23 16:39:57,404 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 11:41:01] 2025-11-23 16:39:57,404 | INFO     | collected zombie processes
[2025-11-23 11:41:01] 2025-11-23 16:39:57,404 | INFO     | will attempt to kill all subprocesses of pid=2899439
[2025-11-23 11:41:01] 2025-11-23 16:39:57,598 | INFO     | process IDs to be killed: [2899439] (in reverse order)
[2025-11-23 11:41:01] 2025-11-23 16:39:57,654 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 11:41:01] 2025-11-23 16:39:57,655 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 11:41:01] 2025-11-23 16:39:57,660 | INFO     | did not find any defunct processes belonging to 2899439
[2025-11-23 11:41:01] 2025-11-23 16:39:57,664 | INFO     | did not find any defunct processes belonging to 2899439
[2025-11-23 11:41:01] 2025-11-23 16:39:57,665 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 11:41:01] 2025-11-23 16:39:57,665 | INFO     | ready for new job
[2025-11-23 11:41:01] 2025-11-23 16:39:57,666 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 11:41:01] 2025-11-23 16:39:57,669 | INFO     | ***************************************
[2025-11-23 11:41:01] 2025-11-23 16:39:57,669 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 11:41:01] 2025-11-23 16:39:57,669 | INFO     | ***************************************
[2025-11-23 11:41:01] 2025-11-23 16:39:57,669 | INFO     | 
[2025-11-23 11:41:01] 2025-11-23 16:39:57,671 | INFO     | architecture information:
[2025-11-23 11:41:01] 2025-11-23 16:39:57,671 | INFO     | executing command: cat /etc/os-release
[2025-11-23 11:41:01] 2025-11-23 16:39:57,684 | INFO     | cat /etc/os-release:
[2025-11-23 11:41:01] NAME="CentOS Linux"
[2025-11-23 11:41:01] VERSION="7 (Core)"
[2025-11-23 11:41:01] ID="centos"
[2025-11-23 11:41:01] ID_LIKE="rhel fedora"
[2025-11-23 11:41:01] VERSION_ID="7"
[2025-11-23 11:41:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 11:41:01] ANSI_COLOR="0;31"
[2025-11-23 11:41:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 11:41:01] HOME_URL="https://www.centos.org/"
[2025-11-23 11:41:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 11:41:01] 
[2025-11-23 11:41:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 11:41:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 11:41:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 11:41:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 11:41:01] 
[2025-11-23 11:41:01] 2025-11-23 16:39:57,685 | INFO     | ***************************************
[2025-11-23 11:41:01] 2025-11-23 16:39:58,188 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-23 11:41:01] 2025-11-23 16:39:58,202 | INFO     | sufficient remaining disk space (39147536384 B)
[2025-11-23 11:41:01] 2025-11-23 16:39:58,202 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 11:41:01] 2025-11-23 16:39:58,202 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 11:41:01] 2025-11-23 16:39:58,203 | INFO     | update_server=False
[2025-11-23 11:41:01] 2025-11-23 16:39:58,203 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 11:41:01] 2025-11-23 16:39:58,203 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 11:41:01] 2025-11-23 16:39:58,268 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 11:41:01] 2025-11-23 16:39:58,344 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 11:41:01] 2025-11-23 16:39:58,345 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 11:41:01] 2025-11-23 16:39:58,345 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 11:41:01] 2025-11-23 16:39:58,345 | INFO     | will abort loop
[2025-11-23 11:41:01] 2025-11-23 16:39:58,513 | INFO     | all data control threads have been joined
[2025-11-23 11:41:01] 2025-11-23 16:39:58,817 | INFO     | all payload control threads have been joined
[2025-11-23 11:41:01] 2025-11-23 16:39:58,854 | INFO     | all job control threads have been joined
[2025-11-23 11:41:01] 2025-11-23 16:39:59,208 | INFO     | [job] retrieve thread has finished
[2025-11-23 11:41:01] 2025-11-23 16:39:59,350 | INFO     | [job] job monitor thread has finished
[2025-11-23 11:41:01] 2025-11-23 16:39:59,518 | INFO     | [data] control thread has finished
[2025-11-23 11:41:01] 2025-11-23 16:39:59,569 | INFO     | [payload] failed_post thread has finished
[2025-11-23 11:41:01] 2025-11-23 16:39:59,823 | INFO     | [payload] control thread has finished
[2025-11-23 11:41:01] 2025-11-23 16:39:59,835 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 11:41:01] 2025-11-23 16:39:59,856 | INFO     | [job] control thread has finished
[2025-11-23 11:41:01] 2025-11-23 16:40:00,114 | INFO     | [job] validate thread has finished
[2025-11-23 11:41:01] 2025-11-23 16:40:00,160 | INFO     | [payload] validate_post thread has finished
[2025-11-23 11:41:01] 2025-11-23 16:40:00,209 | INFO     | [data] copytool_out thread has finished
[2025-11-23 11:41:01] 2025-11-23 16:40:00,279 | INFO     | [data] copytool_in thread has finished
[2025-11-23 11:41:01] 2025-11-23 16:40:00,581 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 11:41:01] 2025-11-23 16:40:00,586 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 11:41:01] 2025-11-23 16:40:00,669 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 11:41:01] 2025-11-23 16:40:00,923 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 11:41:01] 2025-11-23 16:40:01,928 | INFO     | [job] queue monitor thread has finished
[2025-11-23 11:41:01] 2025-11-23 16:40:02,273 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 11:41:01] 2025-11-23 16:40:27,776 | INFO     | PID=2893058 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 11:41:01] 2025-11-23 16:40:27,776 | INFO     | .. there are 3 such processes running
[2025-11-23 11:41:01] 2025-11-23 16:40:27,777 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 11:41:01] 2025-11-23 16:40:27,777 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 11:41:01] 2025-11-23 16:40:27,777 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 11:41:01] 2025-11-23 16:40:56,020 | INFO     | [monitor] cgroup control has ended
[2025-11-23 11:41:01] 2025-11-23 16:40:56,346 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139796475930432)>', '<ExcThread(monitor, started 139795481229056)>']
[2025-11-23 11:41:01] 2025-11-23 16:40:56,919 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 11:41:01] 2025-11-23 16:40:56,919 | INFO     | [monitor] control thread has ended
[2025-11-23 11:41:01] 2025-11-23 16:41:01,371 | INFO     | all workflow threads have been joined
[2025-11-23 11:41:01] 2025-11-23 16:41:01,371 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 11:41:01] 2025-11-23 16:41:01,372 | INFO     | traces error code: 0
[2025-11-23 11:41:01] 2025-11-23 16:41:01,372 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 11:41:01] 2025-11-23 16:41:01,479 [wrapper] ==== pilot stdout END ====
[2025-11-23 11:41:01] 2025-11-23 16:41:01,482 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 11:41:01] 2025-11-23 16:41:01,484 [wrapper] pilotpid: 2893058
[2025-11-23 11:41:01] 2025-11-23 16:41:01,487 [wrapper] Pilot exit status: 0
[2025-11-23 11:41:01] 2025-11-23 16:41:01,495 [wrapper] pandaids: 6895337698
[2025-11-23 11:41:01] 2025-11-23 16:41:01,533 [wrapper] cleanup supervisor_pilot 3359164 2893059
[2025-11-23 11:41:01] 2025-11-23 16:41:01,535 [wrapper] Test setup, not cleaning
[2025-11-23 11:41:01] 2025-11-23 16:41:01,538 [wrapper] apfmon messages muted
[2025-11-23 11:41:01] 2025-11-23 16:41:01,540 [wrapper] ==== wrapper stdout END ====
[2025-11-23 11:41:01] 2025-11-23 16:41:01,542 [wrapper] ==== wrapper stderr END ====
[2025-11-23 11:41:01]  *** Error codes and diagnostics ***
[2025-11-23 11:41:01]     "exeErrorCode": 0,
[2025-11-23 11:41:01]     "exeErrorDiag": "",
[2025-11-23 11:41:01]     "pilotErrorCode": 0,
[2025-11-23 11:41:01]     "pilotErrorDiag": "",
[2025-11-23 11:41:01]  *** Listing of results directory ***
[2025-11-23 11:41:01] total 1315468
[2025-11-23 11:41:01] -rwx------. 1 boincer umatlas     36292 Nov 22 03:29 runpilot2-wrapper.sh
[2025-11-23 11:41:01] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 03:29 queuedata.json
[2025-11-23 11:41:01] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 03:29 pilot3.tar.gz
[2025-11-23 11:41:01] -rw-r--r--. 1 boincer umatlas       100 Nov 23 02:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 11:41:01] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 02:51 run_atlas
[2025-11-23 11:41:01] -rw-r--r--. 1 boincer umatlas       105 Nov 23 02:51 job.xml
[2025-11-23 11:41:01] -rw-r--r--. 2 boincer umatlas 409684948 Nov 23 02:51 EVNT.47483658._000316.pool.root.1
[2025-11-23 11:41:01] -rw-r--r--. 2 boincer umatlas    590094 Nov 23 02:51 input.tar.gz
[2025-11-23 11:41:01] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 02:51 start_atlas.sh
[2025-11-23 11:41:01] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 02:51 shared
[2025-11-23 11:41:01] -rw-r--r--. 1 boincer umatlas         0 Nov 23 02:51 boinc_lockfile
[2025-11-23 11:41:01] -rw-r--r--. 1 boincer umatlas      2785 Nov 23 02:51 pandaJob.out
[2025-11-23 11:41:01] -rw-------. 1 boincer umatlas    989784 Nov 23 02:52 agis_schedconf.cvmfs.json
[2025-11-23 11:41:01] drwx------. 5 boincer umatlas      4096 Nov 23 02:52 pilot3
[2025-11-23 11:41:01] -rw-r--r--. 1 boincer umatlas       532 Nov 23 11:31 boinc_task_state.xml
[2025-11-23 11:41:01] -rw-------. 1 boincer umatlas 920551109 Nov 23 11:39 HITS.47556137._003130.pool.root.1
[2025-11-23 11:41:01] -rw-------. 1 boincer umatlas      1047 Nov 23 11:39 memory_monitor_summary.json
[2025-11-23 11:41:01] -rw-------. 1 boincer umatlas   1526164 Nov 23 11:39 agis_ddmendpoints.agis.ALL.json
[2025-11-23 11:41:01] -rw-------. 1 boincer umatlas   1923065 Nov 23 11:39 log.47556137._003130.job.log.tgz.1
[2025-11-23 11:41:01] -rw-------. 1 boincer umatlas      8618 Nov 23 11:39 heartbeat.json
[2025-11-23 11:41:01] -rw-r--r--. 1 boincer umatlas      6530 Nov 23 11:40 init_data.xml
[2025-11-23 11:41:01] -rw-------. 1 boincer umatlas        95 Nov 23 11:40 pilot_heartbeat.json
[2025-11-23 11:41:01] -rw-r--r--. 1 boincer umatlas      8192 Nov 23 11:41 boinc_mmap_file
[2025-11-23 11:41:01] -rw-r--r--. 1 boincer umatlas        29 Nov 23 11:41 wrapper_checkpoint.txt
[2025-11-23 11:41:01] -rw-------. 1 boincer umatlas      5009 Nov 23 11:41 pilotlog.txt
[2025-11-23 11:41:01] -rw-------. 1 boincer umatlas   4516572 Nov 23 11:41 log.47556137._003130.job.log.1
[2025-11-23 11:41:01] -rw-------. 1 boincer umatlas       353 Nov 23 11:41 output.list
[2025-11-23 11:41:01] -rw-r--r--. 1 boincer umatlas       620 Nov 23 11:41 runtime_log
[2025-11-23 11:41:01] -rw-------. 1 boincer umatlas   6461440 Nov 23 11:41 result.tar.gz
[2025-11-23 11:41:01] -rw-r--r--. 1 boincer umatlas      8818 Nov 23 11:41 runtime_log.err
[2025-11-23 11:41:01] -rw-------. 1 boincer umatlas       659 Nov 23 11:41 8vvNDmfAyg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm23JKDmxszoTm.diag
[2025-11-23 11:41:01] -rw-r--r--. 1 boincer umatlas     21295 Nov 23 11:41 stderr.txt
[2025-11-23 11:41:01] HITS file was successfully produced:
[2025-11-23 11:41:01] -rw-------. 1 boincer umatlas 920551109 Nov 23 11:39 shared/HITS.pool.root.1
[2025-11-23 11:41:01]  *** Contents of shared directory: ***
[2025-11-23 11:41:01] total 1305976
[2025-11-23 11:41:01] -rw-r--r--. 2 boincer umatlas 409684948 Nov 23 02:51 ATLAS.root_0
[2025-11-23 11:41:01] -rw-r--r--. 2 boincer umatlas    590094 Nov 23 02:51 input.tar.gz
[2025-11-23 11:41:01] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 02:51 start_atlas.sh
[2025-11-23 11:41:01] -rw-------. 1 boincer umatlas 920551109 Nov 23 11:39 HITS.pool.root.1
[2025-11-23 11:41:01] -rw-------. 1 boincer umatlas   6461440 Nov 23 11:41 result.tar.gz
11:41:03 (2889366): run_atlas exited; CPU time 279690.180314
11:41:03 (2889366): called boinc_finish(0)

</stderr_txt>
]]>

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