Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:45:30 (2346933): wrapper (7.7.26015): starting
07:45:30 (2346933): wrapper: running run_atlas (--nthreads 3)
[2025-11-23 07:45:30] Arguments: --nthreads 3
[2025-11-23 07:45:30] Threads: 3
[2025-11-23 07:45:30] Checking for CVMFS
[2025-11-23 07:45:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 07:45:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 07:45:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 07:45:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 07:45:30] 2.9.2.0 1731473 460 66808 153199 0 108 34807491 36864001 0 130560 0 1838143 99.998 17016 10810 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-23 07:45:30] CVMFS is ok
[2025-11-23 07:45:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 07:45:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 07:45:30] Further information can be found at the LHC@home message board.
[2025-11-23 07:45:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 07:45:30] Checking for apptainer binary...
[2025-11-23 07:45:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 07:45:30] Running /usr/bin/apptainer --version
[2025-11-23 07:45:30] apptainer version 1.4.1-1.1
[2025-11-23 07:45:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 07:45:30] thA335
[2025-11-23 07:45:30] apptainer works
[2025-11-23 07:45:30] Set ATHENA_PROC_NUMBER=3
[2025-11-23 07:45:30] Set ATHENA_CORE_NUMBER=3
[2025-11-23 07:45:30] Starting ATLAS job with PandaID=6895337697
[2025-11-23 07:45:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 07:49:46]  *** The last 200 lines of the pilot log: ***
[2025-11-23 07:49:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 07:49:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 07:49:46] 
[2025-11-23 07:49:46] 2025-11-23 06:48:54,417 | INFO     | ***************************************
[2025-11-23 07:49:46] 2025-11-23 06:48:54,920 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-23 07:49:46] 2025-11-23 06:48:54,931 | INFO     | sufficient remaining disk space (826827341824 B)
[2025-11-23 07:49:46] 2025-11-23 06:48:54,932 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 07:49:46] 2025-11-23 06:48:54,932 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 07:49:46] 2025-11-23 06:48:54,932 | INFO     | update_server=False
[2025-11-23 07:49:46] 2025-11-23 06:48:54,932 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 07:49:46] 2025-11-23 06:48:54,932 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 07:49:46] 2025-11-23 06:48:54,932 | INFO     | aborting loop
[2025-11-23 07:49:46] 2025-11-23 06:48:54,950 | INFO     | all data control threads have been joined
[2025-11-23 07:49:46] 2025-11-23 06:48:55,224 | INFO     | all job control threads have been joined
[2025-11-23 07:49:46] 2025-11-23 06:48:55,649 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 07:49:46] 2025-11-23 06:48:55,937 | INFO     | [job] retrieve thread has finished
[2025-11-23 07:49:46] 2025-11-23 06:48:55,938 | INFO     | [job] job monitor thread has finished
[2025-11-23 07:49:46] 2025-11-23 06:48:55,956 | INFO     | [data] control thread has finished
[2025-11-23 07:49:46] 2025-11-23 06:48:55,999 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 07:49:46] 2025-11-23 06:48:56,175 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 07:49:46] 2025-11-23 06:48:56,230 | INFO     | [job] control thread has finished
[2025-11-23 07:49:46] 2025-11-23 06:48:56,386 | INFO     | all payload control threads have been joined
[2025-11-23 07:49:46] 2025-11-23 06:48:56,679 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 07:49:46] 2025-11-23 06:48:57,011 | INFO     | [payload] validate_post thread has finished
[2025-11-23 07:49:46] 2025-11-23 06:48:57,236 | INFO     | [data] copytool_in thread has finished
[2025-11-23 07:49:46] 2025-11-23 06:48:57,362 | INFO     | [job] validate thread has finished
[2025-11-23 07:49:46] 2025-11-23 06:48:57,392 | INFO     | [payload] control thread has finished
[2025-11-23 07:49:46] 2025-11-23 06:48:57,439 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 07:49:46] 2025-11-23 06:48:57,540 | INFO     | [payload] failed_post thread has finished
[2025-11-23 07:49:46] 2025-11-23 06:48:57,655 | INFO     | [data] copytool_out thread has finished
[2025-11-23 07:49:46] 2025-11-23 06:48:57,831 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 07:49:46] 2025-11-23 06:48:58,053 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 07:49:46] 2025-11-23 06:48:58,838 | INFO     | [job] queue monitor thread has finished
[2025-11-23 07:49:46] 2025-11-23 06:49:02,060 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 07:49:46] 2025-11-23 06:49:25,667 | INFO     | PID=2350667 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 07:49:46] 2025-11-23 06:49:25,667 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 07:49:46] 2025-11-23 06:49:25,667 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 07:49:46] 2025-11-23 06:49:25,667 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 07:49:46] 2025-11-23 06:49:40,681 | INFO     | [monitor] cgroup control has ended
[2025-11-23 07:49:46] 2025-11-23 06:49:41,713 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139989565630272)>', '<ExcThread(monitor, started 139988930905856)>']
[2025-11-23 07:49:46] 2025-11-23 06:49:41,751 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 07:49:46] 2025-11-23 06:49:41,751 | INFO     | [monitor] control thread has ended
[2025-11-23 07:49:46] 2025-11-23 06:49:46,735 | INFO     | all workflow threads have been joined
[2025-11-23 07:49:46] 2025-11-23 06:49:46,735 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 07:49:46] 2025-11-23 06:49:46,736 | INFO     | traces error code: 0
[2025-11-23 07:49:46] 2025-11-23 06:49:46,736 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 07:49:46] 2025-11-23 06:49:46,815 [wrapper] ==== pilot stdout END ====
[2025-11-23 07:49:46] 2025-11-23 06:49:46,819 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 07:49:46] 2025-11-23 06:49:46,822 [wrapper] pilotpid: 2350667
[2025-11-23 07:49:46] 2025-11-23 06:49:46,825 [wrapper] Pilot exit status: 0
[2025-11-23 07:49:46] 2025-11-23 06:49:46,832 [wrapper] pandaids: 6895337697
[2025-11-23 07:49:46] 2025-11-23 06:49:46,849 [wrapper] cleanup supervisor_pilot 2350673 2350668
[2025-11-23 07:49:46] 2025-11-23 06:49:46,851 [wrapper] Test setup, not cleaning
[2025-11-23 07:49:46] 2025-11-23 06:49:46,854 [wrapper] apfmon messages muted
[2025-11-23 07:49:46] 2025-11-23 06:49:46,856 [wrapper] ==== wrapper stdout END ====
[2025-11-23 07:49:46] 2025-11-23 06:49:46,858 [wrapper] ==== wrapper stderr END ====
[2025-11-23 07:49:46]  *** Error codes and diagnostics ***
[2025-11-23 07:49:46]     "exeErrorCode": 65,
[2025-11-23 07:49:46]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-23 07:49:46]     "pilotErrorCode": 1305,
[2025-11-23 07:49:46]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-23 07:49:46]  *** Listing of results directory ***
[2025-11-23 07:49:46] total 404176
[2025-11-23 07:49:46] -rwx------ 1 boinc boinc     36292 Nov 22 09:29 runpilot2-wrapper.sh
[2025-11-23 07:49:46] -rw-r--r-- 1 boinc boinc      5112 Nov 22 09:29 queuedata.json
[2025-11-23 07:49:46] -rw-r--r-- 1 boinc boinc    576529 Nov 22 09:29 pilot3.tar.gz
[2025-11-23 07:49:46] -rw-r--r-- 1 boinc boinc       100 Nov 23 07:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 07:49:46] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 07:45 run_atlas
[2025-11-23 07:49:46] -rw-r--r-- 1 boinc boinc       105 Nov 23 07:45 job.xml
[2025-11-23 07:49:46] -rw-r--r-- 2 boinc boinc 409684948 Nov 23 07:45 EVNT.47483658._000316.pool.root.1
[2025-11-23 07:49:46] -rw-r--r-- 2 boinc boinc    590095 Nov 23 07:45 input.tar.gz
[2025-11-23 07:49:46] -rw-r--r-- 2 boinc boinc     15847 Nov 23 07:45 start_atlas.sh
[2025-11-23 07:49:46] drwxrwx--x 2 boinc boinc      4096 Nov 23 07:45 shared
[2025-11-23 07:49:46] -rw-r--r-- 1 boinc boinc         0 Nov 23 07:45 boinc_setup_complete
[2025-11-23 07:49:46] -rw-r--r-- 1 boinc boinc      6194 Nov 23 07:45 init_data.xml
[2025-11-23 07:49:46] -rw-r--r-- 1 boinc boinc         0 Nov 23 07:45 boinc_lockfile
[2025-11-23 07:49:46] -rw-r--r-- 1 boinc boinc      2785 Nov 23 07:45 pandaJob.out
[2025-11-23 07:49:46] -rw------- 1 boinc boinc    989784 Nov 23 07:45 agis_schedconf.cvmfs.json
[2025-11-23 07:49:46] -rw------- 1 boinc boinc   1526164 Nov 23 07:45 agis_ddmendpoints.agis.ALL.json
[2025-11-23 07:49:46] drwx------ 5 boinc boinc      4096 Nov 23 07:45 pilot3
[2025-11-23 07:49:46] -rw-r--r-- 1 boinc boinc       524 Nov 23 07:46 boinc_task_state.xml
[2025-11-23 07:49:46] -rw------- 1 boinc boinc       959 Nov 23 07:46 memory_monitor_summary.json
[2025-11-23 07:49:46] -rw------- 1 boinc boinc     55761 Nov 23 07:46 log.47556137._003129.job.log.tgz.1
[2025-11-23 07:49:46] -rw------- 1 boinc boinc        95 Nov 23 07:48 pilot_heartbeat.json
[2025-11-23 07:49:46] -rw------- 1 boinc boinc      8402 Nov 23 07:48 heartbeat.json
[2025-11-23 07:49:46] -rw-r--r-- 1 boinc boinc      8192 Nov 23 07:49 boinc_mmap_file
[2025-11-23 07:49:46] -rw-r--r-- 1 boinc boinc        23 Nov 23 07:49 wrapper_checkpoint.txt
[2025-11-23 07:49:46] -rw------- 1 boinc boinc      4752 Nov 23 07:49 pilotlog.txt
[2025-11-23 07:49:46] -rw------- 1 boinc boinc     93246 Nov 23 07:49 log.47556137._003129.job.log.1
[2025-11-23 07:49:46] -rw------- 1 boinc boinc       186 Nov 23 07:49 output.list
[2025-11-23 07:49:46] -rw-r--r-- 1 boinc boinc       620 Nov 23 07:49 runtime_log
[2025-11-23 07:49:46] -rw------- 1 boinc boinc    163840 Nov 23 07:49 result.tar.gz
[2025-11-23 07:49:46] -rw-r--r-- 1 boinc boinc      8744 Nov 23 07:49 runtime_log.err
[2025-11-23 07:49:46] -rw------- 1 boinc boinc       649 Nov 23 07:49 QmuNDmfAyg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm13JKDmhTotPn.diag
[2025-11-23 07:49:46] -rw-r--r-- 1 boinc boinc      8472 Nov 23 07:49 stderr.txt
[2025-11-23 07:49:46] No HITS result produced
[2025-11-23 07:49:46]  *** Contents of shared directory: ***
[2025-11-23 07:49:46] total 400844
[2025-11-23 07:49:46] -rw-r--r-- 2 boinc boinc 409684948 Nov 23 07:45 ATLAS.root_0
[2025-11-23 07:49:46] -rw-r--r-- 2 boinc boinc    590095 Nov 23 07:45 input.tar.gz
[2025-11-23 07:49:46] -rw-r--r-- 2 boinc boinc     15847 Nov 23 07:45 start_atlas.sh
[2025-11-23 07:49:46] -rw------- 1 boinc boinc    163840 Nov 23 07:49 result.tar.gz
07:49:48 (2346933): run_atlas exited; CPU time 31.017329
07:49:48 (2346933): called boinc_finish(0)

</stderr_txt>
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