Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:20:15 (21644): wrapper (7.7.26015): starting
01:20:15 (21644): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 01:20:15] Arguments: --nthreads 8
[2025-11-23 01:20:15] Threads: 8
[2025-11-23 01:20:15] Checking for CVMFS
[2025-11-23 01:20:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 01:20:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 01:20:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 01:20:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 01:20:15] 2.11.2.0 2827 38390 83120 153199 1 9 13013076 20275201 1 130560 0 4037491 99.412 2753890 29656 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 01:20:15] CVMFS is ok
[2025-11-23 01:20:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 01:20:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 01:20:15] Further information can be found at the LHC@home message board.
[2025-11-23 01:20:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 01:20:15] Checking for apptainer binary...
[2025-11-23 01:20:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 01:20:15] Running /usr/bin/apptainer --version
[2025-11-23 01:20:15] apptainer version 1.3.2-1.el7
[2025-11-23 01:20:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 01:20:17] c-204-30.aglt2.org
[2025-11-23 01:20:17] apptainer works
[2025-11-23 01:20:17] Set ATHENA_PROC_NUMBER=8
[2025-11-23 01:20:17] Set ATHENA_CORE_NUMBER=8
[2025-11-23 01:20:17] Starting ATLAS job with PandaID=6895338335
[2025-11-23 01:20:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 13:42:18]  *** The last 200 lines of the pilot log: ***
[2025-11-23 13:42:18] 2025-11-23 18:41:45,568 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-23 13:42:18] 2025-11-23 18:41:45,572 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1745.75
[2025-11-23 13:42:18] 2025-11-23 18:41:45,574 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895338335/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 13:42:18] 2025-11-23 18:41:45,575 | INFO     | extracted standard info from prmon json
[2025-11-23 13:42:18] 2025-11-23 18:41:45,575 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 13:42:18] 2025-11-23 18:41:45,575 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 13:42:18] 2025-11-23 18:41:45,576 | INFO     | monitor loop #3268: job 0:6895338335 is in state 'finished'
[2025-11-23 13:42:18] 2025-11-23 18:41:45,576 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 13:42:18] 2025-11-23 18:41:45,589 | INFO     | fitting pss+swap vs Time
[2025-11-23 13:42:18] 2025-11-23 18:41:45,590 | INFO     | sum of square deviations: 120132701356.25774
[2025-11-23 13:42:18] 2025-11-23 18:41:45,601 | INFO     | sum of deviations: 674329489873.8578
[2025-11-23 13:42:18] 2025-11-23 18:41:45,602 | INFO     | mean x: 1763901071.628258
[2025-11-23 13:42:18] 2025-11-23 18:41:45,602 | INFO     | mean y: 3178108.0068587107
[2025-11-23 13:42:18] 2025-11-23 18:41:45,602 | INFO     | intersect: -9897960352.966204
[2025-11-23 13:42:18] 2025-11-23 18:41:45,603 | INFO     | chi2: 6.845693693262374
[2025-11-23 13:42:18] 2025-11-23 18:41:45,604 | INFO     | sum of square deviations: 117677892689.27057
[2025-11-23 13:42:18] 2025-11-23 18:41:45,615 | INFO     | sum of deviations: 974898736974.7828
[2025-11-23 13:42:18] 2025-11-23 18:41:45,615 | INFO     | mean x: 1763900919.1325967
[2025-11-23 13:42:18] 2025-11-23 18:41:45,615 | INFO     | mean y: 3196782.7209944753
[2025-11-23 13:42:18] 2025-11-23 18:41:45,615 | INFO     | intersect: -14609783947.242537
[2025-11-23 13:42:18] 2025-11-23 18:41:45,616 | INFO     | chi2: 3.030852221364539
[2025-11-23 13:42:18] 2025-11-23 18:41:45,616 | INFO     | current chi2=3.030852221364539 (change=55.72614906291315 %)
[2025-11-23 13:42:18] 2025-11-23 18:41:45,617 | INFO     | sum of square deviations: 115256715152.5285
[2025-11-23 13:42:18] 2025-11-23 18:41:45,628 | INFO     | sum of deviations: 1076063159305.3282
[2025-11-23 13:42:18] 2025-11-23 18:41:45,628 | INFO     | mean x: 1763900766.635605
[2025-11-23 13:42:18] 2025-11-23 18:41:45,628 | INFO     | mean y: 3203139.432545202
[2025-11-23 13:42:18] 2025-11-23 18:41:45,628 | INFO     | intersect: -16464979466.111372
[2025-11-23 13:42:18] 2025-11-23 18:41:45,629 | INFO     | chi2: 2.3309792204540307
[2025-11-23 13:42:18] 2025-11-23 18:41:45,629 | INFO     | current chi2=2.3309792204540307 (change=23.091624064581218 %)
[2025-11-23 13:42:18] 2025-11-23 18:41:45,629 | INFO     | right removable region: 718
[2025-11-23 13:42:18] 2025-11-23 18:41:45,630 | INFO     | sum of square deviations: 117677613309.27065
[2025-11-23 13:42:18] 2025-11-23 18:41:45,641 | INFO     | sum of deviations: 456107179971.51904
[2025-11-23 13:42:18] 2025-11-23 18:41:45,641 | INFO     | mean x: 1763901224.1325967
[2025-11-23 13:42:18] 2025-11-23 18:41:45,641 | INFO     | mean y: 3191641.473756906
[2025-11-23 13:42:18] 2025-11-23 18:41:45,642 | INFO     | intersect: -6833520885.76823
[2025-11-23 13:42:18] 2025-11-23 18:41:45,642 | INFO     | chi2: 4.663467990452654
[2025-11-23 13:42:18] 2025-11-23 18:41:45,643 | INFO     | current chi2=4.663467990452654 (change=31.87734947822011 %)
[2025-11-23 13:42:18] 2025-11-23 18:41:45,643 | INFO     | sum of square deviations: 115256244232.52855
[2025-11-23 13:42:18] 2025-11-23 18:41:45,654 | INFO     | sum of deviations: 411948821097.8532
[2025-11-23 13:42:18] 2025-11-23 18:41:45,654 | INFO     | mean x: 1763901376.635605
[2025-11-23 13:42:18] 2025-11-23 18:41:45,654 | INFO     | mean y: 3194421.2322670375
[2025-11-23 13:42:18] 2025-11-23 18:41:45,654 | INFO     | intersect: -6301341159.2603035
[2025-11-23 13:42:18] 2025-11-23 18:41:45,655 | INFO     | chi2: 4.62158026664324
[2025-11-23 13:42:18] 2025-11-23 18:41:45,655 | INFO     | current chi2=4.62158026664324 (change=0.8982097420882782 %)
[2025-11-23 13:42:18] 2025-11-23 18:41:45,655 | INFO     | left removable region: 20
[2025-11-23 13:42:18] 2025-11-23 18:41:45,656 | INFO     | sum of square deviations: 105449625006.95866
[2025-11-23 13:42:18] 2025-11-23 18:41:45,666 | INFO     | sum of deviations: 759122347062.9933
[2025-11-23 13:42:18] 2025-11-23 18:41:45,666 | INFO     | mean x: 1763901346.1418338
[2025-11-23 13:42:18] 2025-11-23 18:41:45,666 | INFO     | mean y: 3223181.9899713467
[2025-11-23 13:42:18] 2025-11-23 18:41:45,667 | INFO     | intersect: -12694943642.049469
[2025-11-23 13:42:18] 2025-11-23 18:41:45,667 | INFO     | chi2: 0.061386757628096374
[2025-11-23 13:42:18] 2025-11-23 18:41:45,668 | INFO     | current memory leak: 7.20 B/s (using 698 data points, chi2=0.06)
[2025-11-23 13:42:18] 2025-11-23 18:41:45,668 | INFO     | could have reported an average CPU frequency of 2157 MHz (28 samples)
[2025-11-23 13:42:18] 2025-11-23 18:41:45,668 | INFO     | ..............................
[2025-11-23 13:42:18] 2025-11-23 18:41:45,668 | INFO     | . Timing measurements:
[2025-11-23 13:42:18] 2025-11-23 18:41:45,668 | INFO     | . get job = 0 s
[2025-11-23 13:42:18] 2025-11-23 18:41:45,669 | INFO     | . initial setup = 2 s
[2025-11-23 13:42:18] 2025-11-23 18:41:45,669 | INFO     | . payload setup = 9 s
[2025-11-23 13:42:18] 2025-11-23 18:41:45,669 | INFO     | . stage-in = 0 s
[2025-11-23 13:42:18] 2025-11-23 18:41:45,669 | INFO     | . payload execution = 44427 s
[2025-11-23 13:42:18] 2025-11-23 18:41:45,669 | INFO     | . stage-out = 3 s
[2025-11-23 13:42:18] 2025-11-23 18:41:45,669 | INFO     | . log creation = 0 s
[2025-11-23 13:42:18] 2025-11-23 18:41:45,669 | INFO     | ..............................
[2025-11-23 13:42:18] 2025-11-23 18:41:46,138 | INFO     | 
[2025-11-23 13:42:18] 2025-11-23 18:41:46,139 | INFO     | job summary report
[2025-11-23 13:42:18] 2025-11-23 18:41:46,139 | INFO     | --------------------------------------------------
[2025-11-23 13:42:18] 2025-11-23 18:41:46,139 | INFO     | PanDA job id: 6895338335
[2025-11-23 13:42:18] 2025-11-23 18:41:46,139 | INFO     | task id: 47556149
[2025-11-23 13:42:18] 2025-11-23 18:41:46,139 | INFO     | errors: (none)
[2025-11-23 13:42:18] 2025-11-23 18:41:46,140 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 13:42:18] 2025-11-23 18:41:46,140 | INFO     | pilot state: finished 
[2025-11-23 13:42:18] 2025-11-23 18:41:46,140 | INFO     | transexitcode: 0
[2025-11-23 13:42:18] 2025-11-23 18:41:46,140 | INFO     | exeerrorcode: 0
[2025-11-23 13:42:18] 2025-11-23 18:41:46,140 | INFO     | exeerrordiag: 
[2025-11-23 13:42:18] 2025-11-23 18:41:46,140 | INFO     | exitcode: 0
[2025-11-23 13:42:18] 2025-11-23 18:41:46,141 | INFO     | exitmsg: OK
[2025-11-23 13:42:18] 2025-11-23 18:41:46,141 | INFO     | cpuconsumptiontime: 343757 s
[2025-11-23 13:42:18] 2025-11-23 18:41:46,141 | INFO     | nevents: 1000
[2025-11-23 13:42:18] 2025-11-23 18:41:46,141 | INFO     | neventsw: 0
[2025-11-23 13:42:18] 2025-11-23 18:41:46,141 | INFO     | pid: 31806
[2025-11-23 13:42:18] 2025-11-23 18:41:46,141 | INFO     | pgrp: 31806
[2025-11-23 13:42:18] 2025-11-23 18:41:46,141 | INFO     | corecount: 8
[2025-11-23 13:42:18] 2025-11-23 18:41:46,141 | INFO     | event service: False
[2025-11-23 13:42:18] 2025-11-23 18:41:46,141 | INFO     | sizes: {0: 2298633, 1: 2298832, 7: 2299094, 12: 2299122, 44441: 2344851, 44446: 2353845, 44447: 2354029, 44454: 2354275}
[2025-11-23 13:42:18] 2025-11-23 18:41:46,142 | INFO     | --------------------------------------------------
[2025-11-23 13:42:18] 2025-11-23 18:41:46,142 | INFO     | 
[2025-11-23 13:42:18] 2025-11-23 18:41:46,142 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-23 13:42:18] 2025-11-23 18:41:46,172 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 13:42:18] 2025-11-23 18:41:46,172 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 13:42:18] 2025-11-23 18:41:46,172 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 13:42:18] 2025-11-23 18:41:46,173 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 13:42:18] 2025-11-23 18:41:46,173 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 13:42:18] 2025-11-23 18:41:46,173 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 13:42:18] 2025-11-23 18:41:46,173 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 13:42:18] 2025-11-23 18:41:46,173 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 13:42:18] 2025-11-23 18:41:46,173 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 13:42:18] 2025-11-23 18:41:46,174 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 13:42:18] 2025-11-23 18:41:46,174 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 13:42:18] 2025-11-23 18:41:46,174 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 13:42:18] 2025-11-23 18:41:46,174 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 13:42:18] 2025-11-23 18:41:46,174 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 13:42:18] 2025-11-23 18:41:46,175 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 13:42:18] 2025-11-23 18:41:46,175 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 13:42:18] 2025-11-23 18:41:46,175 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 13:42:18] 2025-11-23 18:41:46,175 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 13:42:18] 2025-11-23 18:41:46,175 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 13:42:18] 2025-11-23 18:41:46,176 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 13:42:18] 2025-11-23 18:41:46,176 | INFO     | job 6895338335 has completed (purged errors)
[2025-11-23 13:42:18] 2025-11-23 18:41:46,176 | INFO     | overall cleanup function is called
[2025-11-23 13:42:18] 2025-11-23 18:41:47,188 | INFO     | --- collectZombieJob: --- 10, [31806]
[2025-11-23 13:42:18] 2025-11-23 18:41:47,189 | INFO     | zombie collector waiting for pid 31806
[2025-11-23 13:42:18] 2025-11-23 18:41:47,189 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 13:42:18] 2025-11-23 18:41:47,189 | INFO     | collected zombie processes
[2025-11-23 13:42:18] 2025-11-23 18:41:47,189 | INFO     | will attempt to kill all subprocesses of pid=31806
[2025-11-23 13:42:18] 2025-11-23 18:41:47,281 | INFO     | process IDs to be killed: [31806] (in reverse order)
[2025-11-23 13:42:18] 2025-11-23 18:41:47,336 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 13:42:18] 2025-11-23 18:41:47,336 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 13:42:18] 2025-11-23 18:41:47,340 | INFO     | did not find any defunct processes belonging to 31806
[2025-11-23 13:42:18] 2025-11-23 18:41:47,343 | INFO     | did not find any defunct processes belonging to 31806
[2025-11-23 13:42:18] 2025-11-23 18:41:47,346 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 13:42:18] 2025-11-23 18:41:47,347 | INFO     | ready for new job
[2025-11-23 13:42:18] 2025-11-23 18:41:47,347 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 13:42:18] 2025-11-23 18:41:47,351 | INFO     | ***************************************
[2025-11-23 13:42:18] 2025-11-23 18:41:47,351 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 13:42:18] 2025-11-23 18:41:47,351 | INFO     | ***************************************
[2025-11-23 13:42:18] 2025-11-23 18:41:47,351 | INFO     | 
[2025-11-23 13:42:18] 2025-11-23 18:41:47,352 | INFO     | architecture information:
[2025-11-23 13:42:18] 2025-11-23 18:41:47,353 | INFO     | executing command: cat /etc/os-release
[2025-11-23 13:42:18] 2025-11-23 18:41:47,370 | INFO     | cat /etc/os-release:
[2025-11-23 13:42:18] NAME="CentOS Linux"
[2025-11-23 13:42:18] VERSION="7 (Core)"
[2025-11-23 13:42:18] ID="centos"
[2025-11-23 13:42:18] ID_LIKE="rhel fedora"
[2025-11-23 13:42:18] VERSION_ID="7"
[2025-11-23 13:42:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 13:42:18] ANSI_COLOR="0;31"
[2025-11-23 13:42:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 13:42:18] HOME_URL="https://www.centos.org/"
[2025-11-23 13:42:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 13:42:18] 
[2025-11-23 13:42:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 13:42:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 13:42:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 13:42:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 13:42:18] 
[2025-11-23 13:42:18] 2025-11-23 18:41:47,371 | INFO     | ***************************************
[2025-11-23 13:42:18] 2025-11-23 18:41:47,874 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-23 13:42:18] 2025-11-23 18:41:47,894 | INFO     | sufficient remaining disk space (17438867456 B)
[2025-11-23 13:42:18] 2025-11-23 18:41:47,894 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 13:42:18] 2025-11-23 18:41:47,894 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 13:42:18] 2025-11-23 18:41:47,895 | INFO     | update_server=False
[2025-11-23 13:42:18] 2025-11-23 18:41:47,895 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 13:42:18] 2025-11-23 18:41:47,997 | INFO     | [monitor] cgroup control has ended
[2025-11-23 13:42:18] 2025-11-23 18:41:48,080 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 13:42:18] 2025-11-23 18:41:48,080 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 13:42:18] 2025-11-23 18:41:48,080 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 13:42:18] 2025-11-23 18:41:48,081 | INFO     | will abort loop
[2025-11-23 13:42:18] 2025-11-23 18:41:48,128 | INFO     | all data control threads have been joined
[2025-11-23 13:42:18] 2025-11-23 18:41:48,218 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 13:42:18] 2025-11-23 18:41:48,614 | INFO     | all payload control threads have been joined
[2025-11-23 13:42:18] 2025-11-23 18:41:48,901 | INFO     | [job] retrieve thread has finished
[2025-11-23 13:42:18] 2025-11-23 18:41:49,086 | INFO     | [job] job monitor thread has finished
[2025-11-23 13:42:18] 2025-11-23 18:41:49,134 | INFO     | [data] control thread has finished
[2025-11-23 13:42:18] 2025-11-23 18:41:49,534 | INFO     | all job control threads have been joined
[2025-11-23 13:42:18] 2025-11-23 18:41:49,562 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 13:42:18] 2025-11-23 18:41:49,619 | INFO     | [payload] failed_post thread has finished
[2025-11-23 13:42:18] 2025-11-23 18:41:49,619 | INFO     | [payload] control thread has finished
[2025-11-23 13:42:18] 2025-11-23 18:41:49,622 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 13:42:18] 2025-11-23 18:41:49,622 | INFO     | [data] copytool_in thread has finished
[2025-11-23 13:42:18] 2025-11-23 18:41:49,715 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 13:42:18] 2025-11-23 18:41:49,754 | INFO     | [job] validate thread has finished
[2025-11-23 13:42:18] 2025-11-23 18:41:49,818 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 13:42:18] 2025-11-23 18:41:49,939 | INFO     | [payload] validate_post thread has finished
[2025-11-23 13:42:18] 2025-11-23 18:41:49,962 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 13:42:18] 2025-11-23 18:41:50,224 | INFO     | [data] copytool_out thread has finished
[2025-11-23 13:42:18] 2025-11-23 18:41:50,538 | INFO     | [job] control thread has finished
[2025-11-23 13:42:18] 2025-11-23 18:41:50,767 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 13:42:18] 2025-11-23 18:41:51,772 | INFO     | [job] queue monitor thread has finished
[2025-11-23 13:42:18] 2025-11-23 18:41:53,824 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 13:42:18] 2025-11-23 18:41:55,440 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140431891101504)>', '<ExcThread(monitor, started 140431320930048)>']
[2025-11-23 13:42:18] 2025-11-23 18:42:00,463 | INFO     | all workflow threads have been joined
[2025-11-23 13:42:18] 2025-11-23 18:42:00,464 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 13:42:18] 2025-11-23 18:42:00,464 | INFO     | traces error code: 0
[2025-11-23 13:42:18] 2025-11-23 18:42:00,469 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 13:42:18] 2025-11-23 18:42:18,300 | INFO     | PID=25387 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 13:42:18] 2025-11-23 18:42:18,300 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 13:42:18] 2025-11-23 18:42:18,300 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 13:42:18] 2025-11-23 18:42:18,300 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 13:42:18] 2025-11-23 18:42:18,301 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 13:42:18] 2025-11-23 18:42:18,301 | INFO     | [monitor] control thread has ended
[2025-11-23 13:42:18] 2025-11-23 18:42:18,433 [wrapper] ==== pilot stdout END ====
[2025-11-23 13:42:18] 2025-11-23 18:42:18,438 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 13:42:18] 2025-11-23 18:42:18,443 [wrapper] pilotpid: 25387
[2025-11-23 13:42:18] 2025-11-23 18:42:18,448 [wrapper] Pilot exit status: 0
[2025-11-23 13:42:18] 2025-11-23 18:42:18,464 [wrapper] pandaids: 6895338335
[2025-11-23 13:42:18] 2025-11-23 18:42:18,506 [wrapper] cleanup supervisor_pilot  2867 25388
[2025-11-23 13:42:18] 2025-11-23 18:42:18,511 [wrapper] Test setup, not cleaning
[2025-11-23 13:42:18] 2025-11-23 18:42:18,516 [wrapper] apfmon messages muted
[2025-11-23 13:42:18] 2025-11-23 18:42:18,522 [wrapper] ==== wrapper stdout END ====
[2025-11-23 13:42:18] 2025-11-23 18:42:18,526 [wrapper] ==== wrapper stderr END ====
[2025-11-23 13:42:18]  *** Error codes and diagnostics ***
[2025-11-23 13:42:18]     "exeErrorCode": 0,
[2025-11-23 13:42:18]     "exeErrorDiag": "",
[2025-11-23 13:42:18]     "pilotErrorCode": 0,
[2025-11-23 13:42:18]     "pilotErrorDiag": "",
[2025-11-23 13:42:18]  *** Listing of results directory ***
[2025-11-23 13:42:18] total 1313408
[2025-11-23 13:42:18] -rw-r--r-- 1 boincer umatlas    576529 Nov 22 03:29 pilot3.tar.gz
[2025-11-23 13:42:18] -rw-r--r-- 1 boincer umatlas      5112 Nov 22 03:34 queuedata.json
[2025-11-23 13:42:18] -rwx------ 1 boincer umatlas     36292 Nov 22 03:35 runpilot2-wrapper.sh
[2025-11-23 13:42:18] -rw-r--r-- 1 boincer umatlas       100 Nov 23 01:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 13:42:18] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 01:20 run_atlas
[2025-11-23 13:42:18] -rw-r--r-- 1 boincer umatlas       105 Nov 23 01:20 job.xml
[2025-11-23 13:42:18] -rw-r--r-- 2 boincer umatlas 408437972 Nov 23 01:20 EVNT.47483658._001078.pool.root.1
[2025-11-23 13:42:18] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 01:20 start_atlas.sh
[2025-11-23 13:42:18] drwxrwx--x 2 boincer umatlas      4096 Nov 23 01:20 shared
[2025-11-23 13:42:18] -rw-r--r-- 2 boincer umatlas    590100 Nov 23 01:20 input.tar.gz
[2025-11-23 13:42:18] -rw-r--r-- 1 boincer umatlas         0 Nov 23 01:20 boinc_lockfile
[2025-11-23 13:42:18] -rw-r--r-- 1 boincer umatlas      2784 Nov 23 01:20 pandaJob.out
[2025-11-23 13:42:18] -rw------- 1 boincer umatlas        57 Nov 23 01:20 setup.sh.local
[2025-11-23 13:42:18] -rw------- 1 boincer umatlas    989784 Nov 23 01:20 agis_schedconf.cvmfs.json
[2025-11-23 13:42:18] drwx------ 5 boincer umatlas      4096 Nov 23 01:20 pilot3
[2025-11-23 13:42:18] -rw-r--r-- 1 boincer umatlas       533 Nov 23 13:32 boinc_task_state.xml
[2025-11-23 13:42:18] -rw-r--r-- 1 boincer umatlas      5912 Nov 23 13:40 init_data.xml
[2025-11-23 13:42:18] -rw------- 1 boincer umatlas 916386425 Nov 23 13:40 HITS.47556149._000644.pool.root.1
[2025-11-23 13:42:18] -rw------- 1 boincer umatlas      1063 Nov 23 13:41 memory_monitor_summary.json
[2025-11-23 13:42:18] -rw------- 1 boincer umatlas   1526164 Nov 23 13:41 agis_ddmendpoints.agis.ALL.json
[2025-11-23 13:42:18] -rw------- 1 boincer umatlas   1976835 Nov 23 13:41 log.47556149._000644.job.log.tgz.1
[2025-11-23 13:42:18] -rw------- 1 boincer umatlas      8655 Nov 23 13:41 heartbeat.json
[2025-11-23 13:42:18] -rw------- 1 boincer umatlas        95 Nov 23 13:41 pilot_heartbeat.json
[2025-11-23 13:42:18] -rw-r--r-- 1 boincer umatlas      8192 Nov 23 13:41 boinc_mmap_file
[2025-11-23 13:42:18] -rw-r--r-- 1 boincer umatlas        29 Nov 23 13:41 wrapper_checkpoint.txt
[2025-11-23 13:42:18] -rw------- 1 boincer umatlas       745 Nov 23 13:42 pilotlog.txt
[2025-11-23 13:42:18] -rw------- 1 boincer umatlas   6117110 Nov 23 13:42 log.47556149._000644.job.log.1
[2025-11-23 13:42:18] -rw------- 1 boincer umatlas       353 Nov 23 13:42 output.list
[2025-11-23 13:42:18] -rw-r--r-- 1 boincer umatlas       620 Nov 23 13:42 runtime_log
[2025-11-23 13:42:18] -rw------- 1 boincer umatlas   8110080 Nov 23 13:42 result.tar.gz
[2025-11-23 13:42:18] -rw-r--r-- 1 boincer umatlas      9343 Nov 23 13:42 runtime_log.err
[2025-11-23 13:42:18] -rw------- 1 boincer umatlas       668 Nov 23 13:42 FmFLDmUGyg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmA2HKDmPh8mjn.diag
[2025-11-23 13:42:18] -rw-r--r-- 1 boincer umatlas     21299 Nov 23 13:42 stderr.txt
[2025-11-23 13:42:18] HITS file was successfully produced:
[2025-11-23 13:42:18] -rw------- 1 boincer umatlas 916386425 Nov 23 13:40 shared/HITS.pool.root.1
[2025-11-23 13:42:18]  *** Contents of shared directory: ***
[2025-11-23 13:42:18] total 1302300
[2025-11-23 13:42:18] -rw-r--r-- 2 boincer umatlas 408437972 Nov 23 01:20 ATLAS.root_0
[2025-11-23 13:42:18] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 01:20 start_atlas.sh
[2025-11-23 13:42:18] -rw-r--r-- 2 boincer umatlas    590100 Nov 23 01:20 input.tar.gz
[2025-11-23 13:42:18] -rw------- 1 boincer umatlas 916386425 Nov 23 13:40 HITS.pool.root.1
[2025-11-23 13:42:18] -rw------- 1 boincer umatlas   8110080 Nov 23 13:42 result.tar.gz
13:42:20 (21644): run_atlas exited; CPU time 341462.057016
13:42:20 (21644): called boinc_finish(0)

</stderr_txt>
]]>

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