Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:01:20 (4036): wrapper (7.7.26015): starting
03:01:20 (4036): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 03:01:20] Arguments: --nthreads 8
[2025-11-26 03:01:20] Threads: 8
[2025-11-26 03:01:20] Checking for CVMFS
[2025-11-26 03:01:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 03:01:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 03:01:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 03:01:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 03:01:23] 2.11.2.0 17769 284563 138992 153304 1 85 20492262 25165825 4632 130560 10 133891306 99.880 82604342 2656 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 03:01:23] CVMFS is ok
[2025-11-26 03:01:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 03:01:23] Checking for apptainer binary...
[2025-11-26 03:01:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 03:01:23] Running /usr/bin/apptainer --version
[2025-11-26 03:01:24] apptainer version 1.3.2-1.el7
[2025-11-26 03:01:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 03:01:44] cg-vwn290.simple-grid.lan
[2025-11-26 03:01:44] apptainer works
[2025-11-26 03:01:44] Set ATHENA_PROC_NUMBER=8
[2025-11-26 03:01:44] Set ATHENA_CORE_NUMBER=8
[2025-11-26 03:01:44] Starting ATLAS job with PandaID=6895337547
[2025-11-26 03:01:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 03:03:35]  *** The last 200 lines of the pilot log: ***
[2025-11-27 03:03:35] 2025-11-27 02:02:36,712 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:03:35] 2025-11-27 02:02:37,165 | INFO     | time since job start (86202s) is within the limit (172800.0s)
[2025-11-27 03:03:35] 2025-11-27 02:02:39,176 | INFO     | time since job start (86204s) is within the limit (172800.0s)
[2025-11-27 03:03:35] 2025-11-27 02:02:39,216 | INFO     | monitor loop #5811: job 0:6895337547 is in state 'finished'
[2025-11-27 03:03:35] 2025-11-27 02:02:39,216 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:03:35] 2025-11-27 02:02:41,184 | INFO     | time since job start (86206s) is within the limit (172800.0s)
[2025-11-27 03:03:35] 2025-11-27 02:02:41,724 | INFO     | monitor loop #5812: job 0:6895337547 is in state 'finished'
[2025-11-27 03:03:35] 2025-11-27 02:02:41,724 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:03:35] 2025-11-27 02:02:43,191 | INFO     | time since job start (86208s) is within the limit (172800.0s)
[2025-11-27 03:03:35] 2025-11-27 02:02:44,234 | INFO     | monitor loop #5813: job 0:6895337547 is in state 'finished'
[2025-11-27 03:03:35] 2025-11-27 02:02:44,234 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:03:35] 2025-11-27 02:02:45,200 | INFO     | time since job start (86210s) is within the limit (172800.0s)
[2025-11-27 03:03:35] 2025-11-27 02:02:46,684 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 03:03:35] 2025-11-27 02:02:46,685 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 03:03:35] 2025-11-27 02:02:46,686 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6895337547/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 03:03:35] 2025-11-27 02:02:46,687 | INFO     | extracted standard info from prmon json
[2025-11-27 03:03:35] 2025-11-27 02:02:46,687 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 03:03:35] 2025-11-27 02:02:46,687 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 03:03:35] 2025-11-27 02:02:46,712 | INFO     | fitting pss+swap vs Time
[2025-11-27 03:03:35] 2025-11-27 02:02:46,714 | INFO     | sum of square deviations: 856348341960.0752
[2025-11-27 03:03:35] 2025-11-27 02:02:46,750 | INFO     | monitor loop #5814: job 0:6895337547 is in state 'finished'
[2025-11-27 03:03:35] 2025-11-27 02:02:46,751 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 03:03:35] 2025-11-27 02:02:46,775 | INFO     | sum of deviations: 3422148030736.2036
[2025-11-27 03:03:35] 2025-11-27 02:02:46,775 | INFO     | mean x: 1764166070.0841055
[2025-11-27 03:03:35] 2025-11-27 02:02:46,775 | INFO     | mean y: 2832872.20171062
[2025-11-27 03:03:35] 2025-11-27 02:02:46,775 | INFO     | intersect: -7047145678.362725
[2025-11-27 03:03:35] 2025-11-27 02:02:46,777 | INFO     | chi2: 24.124535086299428
[2025-11-27 03:03:35] 2025-11-27 02:02:46,779 | INFO     | sum of square deviations: 847225834806.6785
[2025-11-27 03:03:35] 2025-11-27 02:02:46,835 | INFO     | sum of deviations: 3885077184454.664
[2025-11-27 03:03:35] 2025-11-27 02:02:46,835 | INFO     | mean x: 1764165917.587983
[2025-11-27 03:03:35] 2025-11-27 02:02:46,835 | INFO     | mean y: 2840612.3848354793
[2025-11-27 03:03:35] 2025-11-27 02:02:46,835 | INFO     | intersect: -8086998571.494088
[2025-11-27 03:03:35] 2025-11-27 02:02:46,837 | INFO     | chi2: 20.926708015982154
[2025-11-27 03:03:35] 2025-11-27 02:02:46,837 | INFO     | current chi2=20.926708015982154 (change=13.255497189387716 %)
[2025-11-27 03:03:35] 2025-11-27 02:02:46,837 | INFO     | right removable region: 1397
[2025-11-27 03:03:35] 2025-11-27 02:02:46,839 | INFO     | sum of square deviations: 847224906996.6786
[2025-11-27 03:03:35] 2025-11-27 02:02:46,890 | INFO     | sum of deviations: 2838602456566.2754
[2025-11-27 03:03:35] 2025-11-27 02:02:46,890 | INFO     | mean x: 1764166222.587983
[2025-11-27 03:03:35] 2025-11-27 02:02:46,890 | INFO     | mean y: 2842625.7660944206
[2025-11-27 03:03:35] 2025-11-27 02:02:46,890 | INFO     | intersect: -5907945090.545847
[2025-11-27 03:03:35] 2025-11-27 02:02:46,892 | INFO     | chi2: 19.43103943385571
[2025-11-27 03:03:35] 2025-11-27 02:02:46,892 | INFO     | current chi2=19.43103943385571 (change=19.45527918218496 %)
[2025-11-27 03:03:35] 2025-11-27 02:02:46,892 | INFO     | left removable region: 10
[2025-11-27 03:03:35] 2025-11-27 02:02:46,894 | INFO     | sum of square deviations: 827383022153.0543
[2025-11-27 03:03:35] 2025-11-27 02:02:46,947 | INFO     | sum of deviations: 2940468457477.299
[2025-11-27 03:03:35] 2025-11-27 02:02:46,947 | INFO     | mean x: 1764166192.0966115
[2025-11-27 03:03:35] 2025-11-27 02:02:46,948 | INFO     | mean y: 2860471.467916366
[2025-11-27 03:03:35] 2025-11-27 02:02:46,948 | INFO     | intersect: -6266877851.308923
[2025-11-27 03:03:35] 2025-11-27 02:02:46,949 | INFO     | chi2: 12.211185370031007
[2025-11-27 03:03:35] 2025-11-27 02:02:46,950 | INFO     | current memory leak: 3.55 B/s (using 1387 data points, chi2=12.21)
[2025-11-27 03:03:35] 2025-11-27 02:02:46,951 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-11-27 03:03:35] 2025-11-27 02:02:46,951 | INFO     | ..............................
[2025-11-27 03:03:35] 2025-11-27 02:02:46,951 | INFO     | . Timing measurements:
[2025-11-27 03:03:35] 2025-11-27 02:02:46,951 | INFO     | . get job = 0 s
[2025-11-27 03:03:35] 2025-11-27 02:02:46,951 | INFO     | . initial setup = 14 s
[2025-11-27 03:03:35] 2025-11-27 02:02:46,951 | INFO     | . payload setup = 166 s
[2025-11-27 03:03:35] 2025-11-27 02:02:46,951 | INFO     | . stage-in = 0 s
[2025-11-27 03:03:35] 2025-11-27 02:02:46,951 | INFO     | . payload execution = 85750 s
[2025-11-27 03:03:35] 2025-11-27 02:02:46,951 | INFO     | . stage-out = 4 s
[2025-11-27 03:03:35] 2025-11-27 02:02:46,952 | INFO     | . log creation = 1 s
[2025-11-27 03:03:35] 2025-11-27 02:02:46,952 | INFO     | ..............................
[2025-11-27 03:03:35] 2025-11-27 02:02:47,057 | INFO     | 
[2025-11-27 03:03:35] 2025-11-27 02:02:47,057 | INFO     | job summary report
[2025-11-27 03:03:35] 2025-11-27 02:02:47,057 | INFO     | --------------------------------------------------
[2025-11-27 03:03:35] 2025-11-27 02:02:47,057 | INFO     | PanDA job id: 6895337547
[2025-11-27 03:03:35] 2025-11-27 02:02:47,057 | INFO     | task id: 47556137
[2025-11-27 03:03:35] 2025-11-27 02:02:47,057 | INFO     | errors: (none)
[2025-11-27 03:03:35] 2025-11-27 02:02:47,057 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 03:03:35] 2025-11-27 02:02:47,057 | INFO     | pilot state: finished 
[2025-11-27 03:03:35] 2025-11-27 02:02:47,057 | INFO     | transexitcode: 0
[2025-11-27 03:03:35] 2025-11-27 02:02:47,057 | INFO     | exeerrorcode: 0
[2025-11-27 03:03:35] 2025-11-27 02:02:47,058 | INFO     | exeerrordiag: 
[2025-11-27 03:03:35] 2025-11-27 02:02:47,058 | INFO     | exitcode: 0
[2025-11-27 03:03:35] 2025-11-27 02:02:47,058 | INFO     | exitmsg: OK
[2025-11-27 03:03:35] 2025-11-27 02:02:47,058 | INFO     | cpuconsumptiontime: 324250 s
[2025-11-27 03:03:35] 2025-11-27 02:02:47,058 | INFO     | nevents: 1000
[2025-11-27 03:03:35] 2025-11-27 02:02:47,058 | INFO     | neventsw: 0
[2025-11-27 03:03:35] 2025-11-27 02:02:47,058 | INFO     | pid: 14437
[2025-11-27 03:03:35] 2025-11-27 02:02:47,058 | INFO     | pgrp: 14437
[2025-11-27 03:03:35] 2025-11-27 02:02:47,058 | INFO     | corecount: 8
[2025-11-27 03:03:35] 2025-11-27 02:02:47,058 | INFO     | event service: False
[2025-11-27 03:03:35] 2025-11-27 02:02:47,058 | INFO     | sizes: {0: 2283987, 1: 2284071, 2: 2284270, 12: 2284270, 23: 2284298, 34: 2284326, 45: 2284482, 55: 2284510, 66: 2284538, 77: 2284566, 88: 2284622, 98: 2285220, 10
[2025-11-27 03:03:35] 2025-11-27 02:02:47,058 | INFO     | --------------------------------------------------
[2025-11-27 03:03:35] 2025-11-27 02:02:47,059 | INFO     | 
[2025-11-27 03:03:35] 2025-11-27 02:02:47,059 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-11-27 03:03:35] 2025-11-27 02:02:47,087 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 03:03:35] 2025-11-27 02:02:47,087 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 03:03:35] 2025-11-27 02:02:47,087 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 03:03:35] 2025-11-27 02:02:47,087 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 03:03:35] 2025-11-27 02:02:47,088 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 03:03:35] 2025-11-27 02:02:47,088 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 03:03:35] 2025-11-27 02:02:47,088 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 03:03:35] 2025-11-27 02:02:47,088 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 03:03:35] 2025-11-27 02:02:47,088 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 03:03:35] 2025-11-27 02:02:47,088 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 03:03:35] 2025-11-27 02:02:47,088 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 03:03:35] 2025-11-27 02:02:47,088 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 03:03:35] 2025-11-27 02:02:47,088 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 03:03:35] 2025-11-27 02:02:47,088 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 03:03:35] 2025-11-27 02:02:47,088 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 03:03:35] 2025-11-27 02:02:47,089 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 03:03:35] 2025-11-27 02:02:47,089 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 03:03:35] 2025-11-27 02:02:47,089 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 03:03:35] 2025-11-27 02:02:47,089 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 03:03:35] 2025-11-27 02:02:47,089 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 03:03:35] 2025-11-27 02:02:47,089 | INFO     | job 6895337547 has completed (purged errors)
[2025-11-27 03:03:35] 2025-11-27 02:02:47,089 | INFO     | overall cleanup function is called
[2025-11-27 03:03:35] 2025-11-27 02:02:48,105 | INFO     | --- collectZombieJob: --- 10, [14437]
[2025-11-27 03:03:35] 2025-11-27 02:02:48,105 | INFO     | zombie collector waiting for pid 14437
[2025-11-27 03:03:35] 2025-11-27 02:02:48,105 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 03:03:35] 2025-11-27 02:02:48,105 | INFO     | collected zombie processes
[2025-11-27 03:03:35] 2025-11-27 02:02:48,105 | INFO     | will attempt to kill all subprocesses of pid=14437
[2025-11-27 03:03:35] 2025-11-27 02:02:48,195 | INFO     | process IDs to be killed: [14437] (in reverse order)
[2025-11-27 03:03:35] 2025-11-27 02:02:48,253 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 03:03:35] 2025-11-27 02:02:48,254 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 03:03:35] 2025-11-27 02:02:48,257 | INFO     | did not find any defunct processes belonging to 14437
[2025-11-27 03:03:35] 2025-11-27 02:02:48,259 | INFO     | did not find any defunct processes belonging to 14437
[2025-11-27 03:03:35] 2025-11-27 02:02:48,261 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 03:03:35] 2025-11-27 02:02:48,262 | INFO     | ready for new job
[2025-11-27 03:03:35] 2025-11-27 02:02:48,262 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 03:03:35] 2025-11-27 02:02:48,267 | INFO     | ***************************************
[2025-11-27 03:03:35] 2025-11-27 02:02:48,267 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 03:03:35] 2025-11-27 02:02:48,267 | INFO     | ***************************************
[2025-11-27 03:03:35] 2025-11-27 02:02:48,267 | INFO     | 
[2025-11-27 03:03:35] 2025-11-27 02:02:48,268 | INFO     | pilot is running in a VM
[2025-11-27 03:03:35] 2025-11-27 02:02:48,268 | INFO     | architecture information:
[2025-11-27 03:03:35] 2025-11-27 02:02:48,268 | INFO     | executing command: cat /etc/os-release
[2025-11-27 03:03:35] 2025-11-27 02:02:48,281 | INFO     | cat /etc/os-release:
[2025-11-27 03:03:35] NAME="CentOS Linux"
[2025-11-27 03:03:35] VERSION="7 (Core)"
[2025-11-27 03:03:35] ID="centos"
[2025-11-27 03:03:35] ID_LIKE="rhel fedora"
[2025-11-27 03:03:35] VERSION_ID="7"
[2025-11-27 03:03:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 03:03:35] ANSI_COLOR="0;31"
[2025-11-27 03:03:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 03:03:35] HOME_URL="https://www.centos.org/"
[2025-11-27 03:03:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 03:03:35] 
[2025-11-27 03:03:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 03:03:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 03:03:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 03:03:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 03:03:35] 
[2025-11-27 03:03:35] 2025-11-27 02:02:48,282 | INFO     | ***************************************
[2025-11-27 03:03:35] 2025-11-27 02:02:48,785 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-11-27 03:03:35] 2025-11-27 02:02:48,970 | INFO     | sufficient remaining disk space (495851667456 B)
[2025-11-27 03:03:35] 2025-11-27 02:02:48,971 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 03:03:35] 2025-11-27 02:02:48,971 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 03:03:35] 2025-11-27 02:02:48,971 | INFO     | update_server=False
[2025-11-27 03:03:35] 2025-11-27 02:02:48,971 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 03:03:35] 2025-11-27 02:02:48,971 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:03:35] 2025-11-27 02:02:48,971 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 03:03:35] 2025-11-27 02:02:49,255 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 03:03:35] 2025-11-27 02:02:49,255 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 03:03:35] 2025-11-27 02:02:49,255 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:03:35] 2025-11-27 02:02:49,255 | INFO     | will abort loop
[2025-11-27 03:03:35] 2025-11-27 02:02:49,643 | INFO     | all data control threads have been joined
[2025-11-27 03:03:35] 2025-11-27 02:02:49,903 | INFO     | all payload control threads have been joined
[2025-11-27 03:03:35] 2025-11-27 02:02:49,931 | INFO     | all job control threads have been joined
[2025-11-27 03:03:35] 2025-11-27 02:02:49,977 | INFO     | [job] retrieve thread has finished
[2025-11-27 03:03:35] 2025-11-27 02:02:49,978 | INFO     | [job] queue monitor thread has finished
[2025-11-27 03:03:35] 2025-11-27 02:02:50,029 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 03:03:35] 2025-11-27 02:02:50,206 | INFO     | [payload] validate_post thread has finished
[2025-11-27 03:03:35] 2025-11-27 02:02:50,242 | INFO     | [job] validate thread has finished
[2025-11-27 03:03:35] 2025-11-27 02:02:50,261 | INFO     | [job] job monitor thread has finished
[2025-11-27 03:03:35] 2025-11-27 02:02:50,424 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 03:03:35] 2025-11-27 02:02:50,649 | INFO     | [data] control thread has finished
[2025-11-27 03:03:35] 2025-11-27 02:02:50,836 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 03:03:35] 2025-11-27 02:02:50,908 | INFO     | [payload] control thread has finished
[2025-11-27 03:03:35] 2025-11-27 02:02:50,919 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 03:03:35] 2025-11-27 02:02:50,937 | INFO     | [job] control thread has finished
[2025-11-27 03:03:35] 2025-11-27 02:02:50,978 | INFO     | [data] copytool_out thread has finished
[2025-11-27 03:03:35] 2025-11-27 02:02:51,146 | INFO     | [data] copytool_in thread has finished
[2025-11-27 03:03:35] 2025-11-27 02:02:51,532 | INFO     | [payload] failed_post thread has finished
[2025-11-27 03:03:35] 2025-11-27 02:02:52,279 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 03:03:35] 2025-11-27 02:02:56,288 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 03:03:35] 2025-11-27 02:03:18,362 | INFO     | PID=7860 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 03:03:35] 2025-11-27 02:03:18,362 | INFO     | .. there are 9 such processes running
[2025-11-27 03:03:35] 2025-11-27 02:03:18,364 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 03:03:35] 2025-11-27 02:03:18,364 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 03:03:35] 2025-11-27 02:03:18,364 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 03:03:35] 2025-11-27 02:03:25,205 | INFO     | [monitor] cgroup control has ended
[2025-11-27 03:03:35] 2025-11-27 02:03:26,786 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140096674027328)>', '<ExcThread(monitor, started 140095709501184)>']
[2025-11-27 03:03:35] 2025-11-27 02:03:27,417 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 03:03:35] 2025-11-27 02:03:27,417 | INFO     | [monitor] control thread has ended
[2025-11-27 03:03:35] 2025-11-27 02:03:31,812 | INFO     | all workflow threads have been joined
[2025-11-27 03:03:35] 2025-11-27 02:03:31,812 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 03:03:35] 2025-11-27 02:03:31,812 | INFO     | traces error code: 0
[2025-11-27 03:03:35] 2025-11-27 02:03:31,813 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 03:03:35] 2025-11-27 02:03:32,171 [wrapper] ==== pilot stdout END ====
[2025-11-27 03:03:35] 2025-11-27 02:03:32,237 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 03:03:35] 2025-11-27 02:03:32,296 [wrapper] pilotpid: 7860
[2025-11-27 03:03:35] 2025-11-27 02:03:32,325 [wrapper] Pilot exit status: 0
[2025-11-27 03:03:35] 2025-11-27 02:03:32,616 [wrapper] pandaids: 6895337547
[2025-11-27 03:03:35] 2025-11-27 02:03:33,226 [wrapper] cleanup supervisor_pilot 19657 7861
[2025-11-27 03:03:35] 2025-11-27 02:03:33,265 [wrapper] Test setup, not cleaning
[2025-11-27 03:03:35] 2025-11-27 02:03:33,304 [wrapper] apfmon messages muted
[2025-11-27 03:03:35] 2025-11-27 02:03:33,343 [wrapper] ==== wrapper stdout END ====
[2025-11-27 03:03:35] 2025-11-27 02:03:33,392 [wrapper] ==== wrapper stderr END ====
[2025-11-27 03:03:35]  *** Error codes and diagnostics ***
[2025-11-27 03:03:35]     "exeErrorCode": 0,
[2025-11-27 03:03:35]     "exeErrorDiag": "",
[2025-11-27 03:03:35]     "pilotErrorCode": 0,
[2025-11-27 03:03:35]     "pilotErrorDiag": "",
[2025-11-27 03:03:35]  *** Listing of results directory ***
[2025-11-27 03:03:35] total 1327216
[2025-11-27 03:03:35] -rw-r--r--. 1 boinc boinc    576529 Nov 22 08:52 pilot3.tar.gz
[2025-11-27 03:03:35] -rw-r--r--. 1 boinc boinc      5112 Nov 22 09:21 queuedata.json
[2025-11-27 03:03:35] -rwx------. 1 boinc boinc     36292 Nov 22 09:21 runpilot2-wrapper.sh
[2025-11-27 03:03:35] -rw-r--r--. 1 boinc boinc       100 Nov 26 03:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 03:03:35] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 03:01 run_atlas
[2025-11-27 03:03:35] -rw-r--r--. 1 boinc boinc       105 Nov 26 03:01 job.xml
[2025-11-27 03:03:35] -rw-r--r--. 2 boinc boinc 406590155 Nov 26 03:01 EVNT.47483658._000313.pool.root.1
[2025-11-27 03:03:35] -rw-r--r--. 2 boinc boinc     15847 Nov 26 03:01 start_atlas.sh
[2025-11-27 03:03:35] drwxrwx--x. 2 boinc boinc        68 Nov 26 03:01 shared
[2025-11-27 03:03:35] -rw-r--r--. 2 boinc boinc    590093 Nov 26 03:01 input.tar.gz
[2025-11-27 03:03:35] -rw-r--r--. 1 boinc boinc      6392 Nov 26 03:01 init_data.xml
[2025-11-27 03:03:35] -rw-r--r--. 1 boinc boinc         0 Nov 26 03:01 boinc_lockfile
[2025-11-27 03:03:35] -rw-r--r--. 1 boinc boinc      2784 Nov 26 03:01 pandaJob.out
[2025-11-27 03:03:35] -rw-------. 1 boinc boinc    991877 Nov 26 03:05 agis_schedconf.cvmfs.json
[2025-11-27 03:03:35] drwx------. 5 boinc boinc      4096 Nov 26 03:05 pilot3
[2025-11-27 03:03:35] -rw-r--r--. 1 boinc boinc       533 Nov 27 02:36 boinc_task_state.xml
[2025-11-27 03:03:35] -rw-------. 1 boinc boinc 920554342 Nov 27 03:00 HITS.47556137._003092.pool.root.1
[2025-11-27 03:03:35] -rw-------. 1 boinc boinc      1031 Nov 27 03:01 memory_monitor_summary.json
[2025-11-27 03:03:35] -rw-------. 1 boinc boinc   1516240 Nov 27 03:01 agis_ddmendpoints.agis.ALL.json
[2025-11-27 03:03:35] -rw-------. 1 boinc boinc   2492194 Nov 27 03:01 log.47556137._003092.job.log.tgz.1
[2025-11-27 03:03:35] -rw-------. 1 boinc boinc      8627 Nov 27 03:02 heartbeat.json
[2025-11-27 03:03:35] -rw-r--r--. 1 boinc boinc        29 Nov 27 03:03 wrapper_checkpoint.txt
[2025-11-27 03:03:35] -rw-r--r--. 1 boinc boinc      8192 Nov 27 03:03 boinc_mmap_file
[2025-11-27 03:03:35] -rw-------. 1 boinc boinc        95 Nov 27 03:03 pilot_heartbeat.json
[2025-11-27 03:03:35] -rw-------. 1 boinc boinc      5070 Nov 27 03:03 pilotlog.txt
[2025-11-27 03:03:35] -rw-------. 1 boinc boinc  11515423 Nov 27 03:03 log.47556137._003092.job.log.1
[2025-11-27 03:03:35] -rw-------. 1 boinc boinc       353 Nov 27 03:03 output.list
[2025-11-27 03:03:35] -rw-r--r--. 1 boinc boinc       620 Nov 27 03:03 runtime_log
[2025-11-27 03:03:35] -rw-------. 1 boinc boinc  14028800 Nov 27 03:03 result.tar.gz
[2025-11-27 03:03:35] -rw-------. 1 boinc boinc       662 Nov 27 03:03 zreKDmc3xg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmc3JKDm0qQPIn.diag
[2025-11-27 03:03:35] -rw-r--r--. 1 boinc boinc      8833 Nov 27 03:03 runtime_log.err
[2025-11-27 03:03:35] -rw-r--r--. 1 boinc boinc     21431 Nov 27 03:03 stderr.txt
[2025-11-27 03:03:35] HITS file was successfully produced:
[2025-11-27 03:03:35] -rw-------. 1 boinc boinc 920554342 Nov 27 03:00 shared/HITS.pool.root.1
[2025-11-27 03:03:35]  *** Contents of shared directory: ***
[2025-11-27 03:03:35] total 1310340
[2025-11-27 03:03:35] -rw-r--r--. 2 boinc boinc 406590155 Nov 26 03:01 ATLAS.root_0
[2025-11-27 03:03:35] -rw-r--r--. 2 boinc boinc     15847 Nov 26 03:01 start_atlas.sh
[2025-11-27 03:03:35] -rw-r--r--. 2 boinc boinc    590093 Nov 26 03:01 input.tar.gz
[2025-11-27 03:03:35] -rw-------. 1 boinc boinc 920554342 Nov 27 03:00 HITS.pool.root.1
[2025-11-27 03:03:35] -rw-------. 1 boinc boinc  14028800 Nov 27 03:03 result.tar.gz
03:03:36 (4036): run_atlas exited; CPU time 324883.863709
03:03:36 (4036): called boinc_finish(0)

</stderr_txt>
]]>

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