Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:43:43 (3601): wrapper (7.7.26015): starting
02:43:43 (3601): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 02:43:43] Arguments: --nthreads 8
[2025-11-26 02:43:43] Threads: 8
[2025-11-26 02:43:43] Checking for CVMFS
[2025-11-26 02:43:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 02:43:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 02:43:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 02:43:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 02:43:45] 2.11.2.0 18458 284563 144564 153304 1 85 22578595 25165824 1288 130560 12 126615290 99.878 77597981 2904 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 02:43:45] CVMFS is ok
[2025-11-26 02:43:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 02:43:45] Checking for apptainer binary...
[2025-11-26 02:43:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 02:43:45] Running /usr/bin/apptainer --version
[2025-11-26 02:43:46] apptainer version 1.3.2-1.el7
[2025-11-26 02:43:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 02:43:55] cg-vwn434.simple-grid.lan
[2025-11-26 02:43:55] apptainer works
[2025-11-26 02:43:55] Set ATHENA_PROC_NUMBER=8
[2025-11-26 02:43:55] Set ATHENA_CORE_NUMBER=8
[2025-11-26 02:43:55] Starting ATLAS job with PandaID=6895337485
[2025-11-26 02:43:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 02:38:12]  *** The last 200 lines of the pilot log: ***
[2025-11-27 02:38:12] 2025-11-27 01:37:24,462 | INFO     | time since job start (85743s) is within the limit (172800.0s)
[2025-11-27 02:38:12] 2025-11-27 01:37:26,471 | INFO     | time since job start (85745s) is within the limit (172800.0s)
[2025-11-27 02:38:12] 2025-11-27 01:37:26,674 | INFO     | monitor loop #5753: job 0:6895337485 is in state 'finished'
[2025-11-27 02:38:12] 2025-11-27 01:37:26,674 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:38:12] 2025-11-27 01:37:28,478 | INFO     | time since job start (85747s) is within the limit (172800.0s)
[2025-11-27 02:38:12] 2025-11-27 01:37:29,181 | INFO     | monitor loop #5754: job 0:6895337485 is in state 'finished'
[2025-11-27 02:38:12] 2025-11-27 01:37:29,181 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:38:12] 2025-11-27 01:37:30,483 | INFO     | time since job start (85749s) is within the limit (172800.0s)
[2025-11-27 02:38:12] 2025-11-27 01:37:31,685 | INFO     | monitor loop #5755: job 0:6895337485 is in state 'finished'
[2025-11-27 02:38:12] 2025-11-27 01:37:31,685 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:38:12] 2025-11-27 01:37:32,491 | INFO     | time since job start (85751s) is within the limit (172800.0s)
[2025-11-27 02:38:12] 2025-11-27 01:37:33,639 | INFO     | PID=7402 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 02:38:12] 2025-11-27 01:37:33,639 | INFO     | .. there are 9 such processes running
[2025-11-27 02:38:12] 2025-11-27 01:37:34,195 | INFO     | monitor loop #5756: job 0:6895337485 is in state 'finished'
[2025-11-27 02:38:12] 2025-11-27 01:37:34,195 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:38:12] 2025-11-27 01:37:34,649 | INFO     | time since job start (85753s) is within the limit (172800.0s)
[2025-11-27 02:38:12] 2025-11-27 01:37:35,714 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 02:38:12] 2025-11-27 01:37:35,715 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 02:38:12] 2025-11-27 01:37:35,716 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6895337485/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 02:38:12] 2025-11-27 01:37:35,717 | INFO     | extracted standard info from prmon json
[2025-11-27 02:38:12] 2025-11-27 01:37:35,717 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 02:38:12] 2025-11-27 01:37:35,717 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 02:38:12] 2025-11-27 01:37:35,748 | INFO     | fitting pss+swap vs Time
[2025-11-27 02:38:12] 2025-11-27 01:37:35,750 | INFO     | sum of square deviations: 843596153733.7499
[2025-11-27 02:38:12] 2025-11-27 01:37:35,841 | INFO     | sum of deviations: 3464555296902.538
[2025-11-27 02:38:12] 2025-11-27 01:37:35,841 | INFO     | mean x: 1764164756.5974212
[2025-11-27 02:38:12] 2025-11-27 01:37:35,842 | INFO     | mean y: 2854010.2055873927
[2025-11-27 02:38:12] 2025-11-27 01:37:35,842 | INFO     | intersect: -7242373845.595442
[2025-11-27 02:38:12] 2025-11-27 01:37:35,850 | INFO     | chi2: 20.569326400718236
[2025-11-27 02:38:12] 2025-11-27 01:37:35,852 | INFO     | sum of square deviations: 834564619082.7081
[2025-11-27 02:38:12] 2025-11-27 01:37:35,909 | INFO     | sum of deviations: 3954182283224.5312
[2025-11-27 02:38:12] 2025-11-27 01:37:35,909 | INFO     | mean x: 1764164604.1013658
[2025-11-27 02:38:12] 2025-11-27 01:37:35,909 | INFO     | mean y: 2862277.7196261683
[2025-11-27 02:38:12] 2025-11-27 01:37:35,909 | INFO     | intersect: -8355781574.08511
[2025-11-27 02:38:12] 2025-11-27 01:37:35,911 | INFO     | chi2: 17.062403095097807
[2025-11-27 02:38:12] 2025-11-27 01:37:35,911 | INFO     | current chi2=17.062403095097807 (change=17.049286093772984 %)
[2025-11-27 02:38:12] 2025-11-27 01:37:35,911 | INFO     | right removable region: 1390
[2025-11-27 02:38:12] 2025-11-27 01:37:35,913 | INFO     | sum of square deviations: 834563684562.708
[2025-11-27 02:38:12] 2025-11-27 01:37:35,966 | INFO     | sum of deviations: 2868469840515.9893
[2025-11-27 02:38:12] 2025-11-27 01:37:35,966 | INFO     | mean x: 1764164909.1013658
[2025-11-27 02:38:12] 2025-11-27 01:37:35,966 | INFO     | mean y: 2864074.0567936734
[2025-11-27 02:38:12] 2025-11-27 01:37:35,966 | INFO     | intersect: -6060728110.769053
[2025-11-27 02:38:12] 2025-11-27 01:37:35,968 | INFO     | chi2: 15.707336107978225
[2025-11-27 02:38:12] 2025-11-27 01:37:35,968 | INFO     | current chi2=15.707336107978225 (change=23.63709048134041 %)
[2025-11-27 02:38:12] 2025-11-27 01:37:35,968 | INFO     | left removable region: 10
[2025-11-27 02:38:12] 2025-11-27 01:37:35,970 | INFO     | sum of square deviations: 814920786446.2582
[2025-11-27 02:38:12] 2025-11-27 01:37:36,026 | INFO     | sum of deviations: 2976953470873.274
[2025-11-27 02:38:12] 2025-11-27 01:37:36,027 | INFO     | mean x: 1764164878.6101449
[2025-11-27 02:38:12] 2025-11-27 01:37:36,027 | INFO     | mean y: 2882614.1231884058
[2025-11-27 02:38:12] 2025-11-27 01:37:36,027 | INFO     | intersect: -6441715248.539802
[2025-11-27 02:38:12] 2025-11-27 01:37:36,029 | INFO     | chi2: 8.169021535696183
[2025-11-27 02:38:12] 2025-11-27 01:37:36,029 | INFO     | current memory leak: 3.65 B/s (using 1380 data points, chi2=8.17)
[2025-11-27 02:38:12] 2025-11-27 01:37:36,030 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-27 02:38:12] 2025-11-27 01:37:36,030 | INFO     | ..............................
[2025-11-27 02:38:12] 2025-11-27 01:37:36,030 | INFO     | . Timing measurements:
[2025-11-27 02:38:12] 2025-11-27 01:37:36,031 | INFO     | . get job = 0 s
[2025-11-27 02:38:12] 2025-11-27 01:37:36,031 | INFO     | . initial setup = 8 s
[2025-11-27 02:38:12] 2025-11-27 01:37:36,031 | INFO     | . payload setup = 151 s
[2025-11-27 02:38:12] 2025-11-27 01:37:36,031 | INFO     | . stage-in = 0 s
[2025-11-27 02:38:12] 2025-11-27 01:37:36,031 | INFO     | . payload execution = 85314 s
[2025-11-27 02:38:12] 2025-11-27 01:37:36,031 | INFO     | . stage-out = 5 s
[2025-11-27 02:38:12] 2025-11-27 01:37:36,031 | INFO     | . log creation = 1 s
[2025-11-27 02:38:12] 2025-11-27 01:37:36,031 | INFO     | ..............................
[2025-11-27 02:38:12] 2025-11-27 01:37:36,137 | INFO     | 
[2025-11-27 02:38:12] 2025-11-27 01:37:36,138 | INFO     | job summary report
[2025-11-27 02:38:12] 2025-11-27 01:37:36,138 | INFO     | --------------------------------------------------
[2025-11-27 02:38:12] 2025-11-27 01:37:36,138 | INFO     | PanDA job id: 6895337485
[2025-11-27 02:38:12] 2025-11-27 01:37:36,138 | INFO     | task id: 47556149
[2025-11-27 02:38:12] 2025-11-27 01:37:36,138 | INFO     | errors: (none)
[2025-11-27 02:38:12] 2025-11-27 01:37:36,138 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 02:38:12] 2025-11-27 01:37:36,138 | INFO     | pilot state: finished 
[2025-11-27 02:38:12] 2025-11-27 01:37:36,138 | INFO     | transexitcode: 0
[2025-11-27 02:38:12] 2025-11-27 01:37:36,138 | INFO     | exeerrorcode: 0
[2025-11-27 02:38:12] 2025-11-27 01:37:36,138 | INFO     | exeerrordiag: 
[2025-11-27 02:38:12] 2025-11-27 01:37:36,138 | INFO     | exitcode: 0
[2025-11-27 02:38:12] 2025-11-27 01:37:36,138 | INFO     | exitmsg: OK
[2025-11-27 02:38:12] 2025-11-27 01:37:36,138 | INFO     | cpuconsumptiontime: 322233 s
[2025-11-27 02:38:12] 2025-11-27 01:37:36,139 | INFO     | nevents: 1000
[2025-11-27 02:38:12] 2025-11-27 01:37:36,139 | INFO     | neventsw: 0
[2025-11-27 02:38:12] 2025-11-27 01:37:36,139 | INFO     | pid: 13946
[2025-11-27 02:38:12] 2025-11-27 01:37:36,139 | INFO     | pgrp: 13946
[2025-11-27 02:38:12] 2025-11-27 01:37:36,139 | INFO     | corecount: 8
[2025-11-27 02:38:12] 2025-11-27 01:37:36,139 | INFO     | event service: False
[2025-11-27 02:38:12] 2025-11-27 01:37:36,139 | INFO     | sizes: {0: 2283484, 1: 2284169, 2: 2284368, 3: 2284368, 13: 2284396, 24: 2284452, 35: 2284608, 46: 2284636, 56: 2284664, 67: 2284692, 78: 2284720, 89: 2285056, 99:
[2025-11-27 02:38:12] 2025-11-27 01:37:36,139 | INFO     | --------------------------------------------------
[2025-11-27 02:38:12] 2025-11-27 01:37:36,139 | INFO     | 
[2025-11-27 02:38:12] 2025-11-27 01:37:36,139 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-27 02:38:12] 2025-11-27 01:37:36,167 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 02:38:12] 2025-11-27 01:37:36,167 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 02:38:12] 2025-11-27 01:37:36,167 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 02:38:12] 2025-11-27 01:37:36,167 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 02:38:12] 2025-11-27 01:37:36,168 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 02:38:12] 2025-11-27 01:37:36,168 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 02:38:12] 2025-11-27 01:37:36,168 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 02:38:12] 2025-11-27 01:37:36,168 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 02:38:12] 2025-11-27 01:37:36,168 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 02:38:12] 2025-11-27 01:37:36,168 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 02:38:12] 2025-11-27 01:37:36,168 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 02:38:12] 2025-11-27 01:37:36,168 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 02:38:12] 2025-11-27 01:37:36,168 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 02:38:12] 2025-11-27 01:37:36,168 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 02:38:12] 2025-11-27 01:37:36,168 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 02:38:12] 2025-11-27 01:37:36,169 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 02:38:12] 2025-11-27 01:37:36,169 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 02:38:12] 2025-11-27 01:37:36,169 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 02:38:12] 2025-11-27 01:37:36,169 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 02:38:12] 2025-11-27 01:37:36,169 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 02:38:12] 2025-11-27 01:37:36,169 | INFO     | job 6895337485 has completed (purged errors)
[2025-11-27 02:38:12] 2025-11-27 01:37:36,169 | INFO     | overall cleanup function is called
[2025-11-27 02:38:12] 2025-11-27 01:37:37,185 | INFO     | --- collectZombieJob: --- 10, [13946]
[2025-11-27 02:38:12] 2025-11-27 01:37:37,185 | INFO     | zombie collector waiting for pid 13946
[2025-11-27 02:38:12] 2025-11-27 01:37:37,185 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 02:38:12] 2025-11-27 01:37:37,186 | INFO     | collected zombie processes
[2025-11-27 02:38:12] 2025-11-27 01:37:37,186 | INFO     | will attempt to kill all subprocesses of pid=13946
[2025-11-27 02:38:12] 2025-11-27 01:37:37,285 | INFO     | process IDs to be killed: [13946] (in reverse order)
[2025-11-27 02:38:12] 2025-11-27 01:37:37,409 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 02:38:12] 2025-11-27 01:37:37,409 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 02:38:12] 2025-11-27 01:37:37,413 | INFO     | did not find any defunct processes belonging to 13946
[2025-11-27 02:38:12] 2025-11-27 01:37:37,416 | INFO     | did not find any defunct processes belonging to 13946
[2025-11-27 02:38:12] 2025-11-27 01:37:37,458 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 02:38:12] 2025-11-27 01:37:37,459 | INFO     | ready for new job
[2025-11-27 02:38:12] 2025-11-27 01:37:37,459 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 02:38:12] 2025-11-27 01:37:37,464 | INFO     | ***************************************
[2025-11-27 02:38:12] 2025-11-27 01:37:37,464 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 02:38:12] 2025-11-27 01:37:37,464 | INFO     | ***************************************
[2025-11-27 02:38:12] 2025-11-27 01:37:37,464 | INFO     | 
[2025-11-27 02:38:12] 2025-11-27 01:37:37,465 | INFO     | pilot is running in a VM
[2025-11-27 02:38:12] 2025-11-27 01:37:37,465 | INFO     | architecture information:
[2025-11-27 02:38:12] 2025-11-27 01:37:37,470 | INFO     | executing command: cat /etc/os-release
[2025-11-27 02:38:12] 2025-11-27 01:37:37,619 | INFO     | cat /etc/os-release:
[2025-11-27 02:38:12] NAME="CentOS Linux"
[2025-11-27 02:38:12] VERSION="7 (Core)"
[2025-11-27 02:38:12] ID="centos"
[2025-11-27 02:38:12] ID_LIKE="rhel fedora"
[2025-11-27 02:38:12] VERSION_ID="7"
[2025-11-27 02:38:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 02:38:12] ANSI_COLOR="0;31"
[2025-11-27 02:38:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 02:38:12] HOME_URL="https://www.centos.org/"
[2025-11-27 02:38:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 02:38:12] 
[2025-11-27 02:38:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 02:38:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 02:38:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 02:38:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 02:38:12] 
[2025-11-27 02:38:12] 2025-11-27 01:37:37,619 | INFO     | ***************************************
[2025-11-27 02:38:12] 2025-11-27 01:37:38,122 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-27 02:38:12] 2025-11-27 01:37:38,290 | INFO     | sufficient remaining disk space (495132344320 B)
[2025-11-27 02:38:12] 2025-11-27 01:37:38,290 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 02:38:12] 2025-11-27 01:37:38,290 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 02:38:12] 2025-11-27 01:37:38,290 | INFO     | update_server=False
[2025-11-27 02:38:12] 2025-11-27 01:37:38,291 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 02:38:12] 2025-11-27 01:37:38,291 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:38:12] 2025-11-27 01:37:38,291 | INFO     | aborting loop
[2025-11-27 02:38:12] 2025-11-27 01:37:38,305 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 02:38:12] 2025-11-27 01:37:38,758 | INFO     | all data control threads have been joined
[2025-11-27 02:38:12] 2025-11-27 01:37:39,232 | INFO     | all job control threads have been joined
[2025-11-27 02:38:12] 2025-11-27 01:37:39,296 | INFO     | [job] retrieve thread has finished
[2025-11-27 02:38:12] 2025-11-27 01:37:39,297 | INFO     | [job] job monitor thread has finished
[2025-11-27 02:38:12] 2025-11-27 01:37:39,324 | INFO     | all payload control threads have been joined
[2025-11-27 02:38:12] 2025-11-27 01:37:39,371 | INFO     | [payload] validate_post thread has finished
[2025-11-27 02:38:12] 2025-11-27 01:37:39,638 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 02:38:12] 2025-11-27 01:37:39,764 | INFO     | [data] control thread has finished
[2025-11-27 02:38:12] 2025-11-27 01:37:39,888 | INFO     | [payload] failed_post thread has finished
[2025-11-27 02:38:12] 2025-11-27 01:37:39,944 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 02:38:12] 2025-11-27 01:37:39,995 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 02:38:12] 2025-11-27 01:37:40,238 | INFO     | [job] control thread has finished
[2025-11-27 02:38:12] 2025-11-27 01:37:40,263 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 02:38:12] 2025-11-27 01:37:40,330 | INFO     | [payload] control thread has finished
[2025-11-27 02:38:12] 2025-11-27 01:37:40,398 | INFO     | [data] copytool_in thread has finished
[2025-11-27 02:38:12] 2025-11-27 01:37:40,399 | INFO     | [job] validate thread has finished
[2025-11-27 02:38:12] 2025-11-27 01:37:40,669 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 02:38:12] 2025-11-27 01:37:41,154 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:38:12] 2025-11-27 01:37:41,645 | INFO     | [data] copytool_out thread has finished
[2025-11-27 02:38:12] 2025-11-27 01:37:42,160 | INFO     | [job] queue monitor thread has finished
[2025-11-27 02:38:12] 2025-11-27 01:37:42,314 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 02:38:12] 2025-11-27 01:37:50,421 | INFO     | [monitor] cgroup control has ended
[2025-11-27 02:38:12] 2025-11-27 01:37:51,125 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140143752775488)>', '<ExcThread(monitor, started 140143096751872)>']
[2025-11-27 02:38:12] 2025-11-27 01:37:56,152 | INFO     | all workflow threads have been joined
[2025-11-27 02:38:12] 2025-11-27 01:37:56,152 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 02:38:12] 2025-11-27 01:37:56,153 | INFO     | traces error code: 0
[2025-11-27 02:38:12] 2025-11-27 01:37:56,153 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 02:38:12] 2025-11-27 01:38:07,872 | INFO     | PID=7402 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 02:38:12] 2025-11-27 01:38:07,872 | INFO     | .. there are 9 such processes running
[2025-11-27 02:38:12] 2025-11-27 01:38:07,872 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 02:38:12] 2025-11-27 01:38:07,872 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 02:38:12] 2025-11-27 01:38:07,872 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 02:38:12] 2025-11-27 01:38:07,873 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 02:38:12] 2025-11-27 01:38:07,873 | INFO     | [monitor] control thread has ended
[2025-11-27 02:38:12] 2025-11-27 01:38:08,001 [wrapper] ==== pilot stdout END ====
[2025-11-27 02:38:12] 2025-11-27 01:38:08,018 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 02:38:12] 2025-11-27 01:38:08,073 [wrapper] pilotpid: 7402
[2025-11-27 02:38:12] 2025-11-27 01:38:08,196 [wrapper] Pilot exit status: 0
[2025-11-27 02:38:12] 2025-11-27 01:38:08,548 [wrapper] pandaids: 6895337485
[2025-11-27 02:38:12] 2025-11-27 01:38:09,493 [wrapper] cleanup supervisor_pilot 19936 7403
[2025-11-27 02:38:12] 2025-11-27 01:38:09,626 [wrapper] Test setup, not cleaning
[2025-11-27 02:38:12] 2025-11-27 01:38:09,767 [wrapper] apfmon messages muted
[2025-11-27 02:38:12] 2025-11-27 01:38:09,896 [wrapper] ==== wrapper stdout END ====
[2025-11-27 02:38:12] 2025-11-27 01:38:10,006 [wrapper] ==== wrapper stderr END ====
[2025-11-27 02:38:12]  *** Error codes and diagnostics ***
[2025-11-27 02:38:12]     "exeErrorCode": 0,
[2025-11-27 02:38:12]     "exeErrorDiag": "",
[2025-11-27 02:38:12]     "pilotErrorCode": 0,
[2025-11-27 02:38:12]     "pilotErrorDiag": "",
[2025-11-27 02:38:12]  *** Listing of results directory ***
[2025-11-27 02:38:12] total 1343440
[2025-11-27 02:38:12] -rw-r--r--. 1 boinc boinc    576529 Nov 22 08:52 pilot3.tar.gz
[2025-11-27 02:38:12] -rw-r--r--. 1 boinc boinc      5112 Nov 22 09:10 queuedata.json
[2025-11-27 02:38:12] -rwx------. 1 boinc boinc     36292 Nov 22 09:11 runpilot2-wrapper.sh
[2025-11-27 02:38:12] -rw-r--r--. 1 boinc boinc       100 Nov 26 02:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 02:38:12] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 02:43 run_atlas
[2025-11-27 02:38:12] -rw-r--r--. 1 boinc boinc       105 Nov 26 02:43 job.xml
[2025-11-27 02:38:12] -rw-r--r--. 2 boinc boinc 409269050 Nov 26 02:43 EVNT.47483658._001075.pool.root.1
[2025-11-27 02:38:12] -rw-r--r--. 2 boinc boinc    590097 Nov 26 02:43 input.tar.gz
[2025-11-27 02:38:12] -rw-r--r--. 1 boinc boinc      6392 Nov 26 02:43 init_data.xml
[2025-11-27 02:38:12] -rw-r--r--. 2 boinc boinc     15847 Nov 26 02:43 start_atlas.sh
[2025-11-27 02:38:12] drwxrwx--x. 2 boinc boinc        68 Nov 26 02:43 shared
[2025-11-27 02:38:12] -rw-r--r--. 1 boinc boinc         0 Nov 26 02:43 boinc_lockfile
[2025-11-27 02:38:12] -rw-r--r--. 1 boinc boinc      2784 Nov 26 02:43 pandaJob.out
[2025-11-27 02:38:12] -rw-------. 1 boinc boinc    991877 Nov 26 02:48 agis_schedconf.cvmfs.json
[2025-11-27 02:38:12] drwx------. 5 boinc boinc      4096 Nov 26 02:48 pilot3
[2025-11-27 02:38:12] -rw-r--r--. 1 boinc boinc       533 Nov 27 02:12 boinc_task_state.xml
[2025-11-27 02:38:12] -rw-------. 1 boinc boinc 934798176 Nov 27 02:34 HITS.47556149._000612.pool.root.1
[2025-11-27 02:38:12] -rw-------. 1 boinc boinc      1029 Nov 27 02:35 memory_monitor_summary.json
[2025-11-27 02:38:12] -rw-------. 1 boinc boinc   1516240 Nov 27 02:36 agis_ddmendpoints.agis.ALL.json
[2025-11-27 02:38:12] -rw-------. 1 boinc boinc   2465869 Nov 27 02:36 log.47556149._000612.job.log.tgz.1
[2025-11-27 02:38:12] -rw-------. 1 boinc boinc        95 Nov 27 02:37 pilot_heartbeat.json
[2025-11-27 02:38:12] -rw-------. 1 boinc boinc      7942 Nov 27 02:37 heartbeat.json
[2025-11-27 02:38:12] -rw-r--r--. 1 boinc boinc      8192 Nov 27 02:37 boinc_mmap_file
[2025-11-27 02:38:12] -rw-r--r--. 1 boinc boinc        29 Nov 27 02:37 wrapper_checkpoint.txt
[2025-11-27 02:38:12] -rw-------. 1 boinc boinc       819 Nov 27 02:38 pilotlog.txt
[2025-11-27 02:38:12] -rw-------. 1 boinc boinc  11388971 Nov 27 02:38 log.47556149._000612.job.log.1
[2025-11-27 02:38:12] -rw-------. 1 boinc boinc       353 Nov 27 02:38 output.list
[2025-11-27 02:38:12] -rw-r--r--. 1 boinc boinc       620 Nov 27 02:38 runtime_log
[2025-11-27 02:38:12] -rw-------. 1 boinc boinc  13875200 Nov 27 02:38 result.tar.gz
[2025-11-27 02:38:12] -rw-r--r--. 1 boinc boinc      8817 Nov 27 02:38 runtime_log.err
[2025-11-27 02:38:12] -rw-------. 1 boinc boinc       662 Nov 27 02:38 ok1KDmZtxg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmv2JKDmIbCZCn.diag
[2025-11-27 02:38:12] -rw-r--r--. 1 boinc boinc     21501 Nov 27 02:38 stderr.txt
[2025-11-27 02:38:12] HITS file was successfully produced:
[2025-11-27 02:38:12] -rw-------. 1 boinc boinc 934798176 Nov 27 02:34 shared/HITS.pool.root.1
[2025-11-27 02:38:12]  *** Contents of shared directory: ***
[2025-11-27 02:38:12] total 1326720
[2025-11-27 02:38:12] -rw-r--r--. 2 boinc boinc 409269050 Nov 26 02:43 ATLAS.root_0
[2025-11-27 02:38:12] -rw-r--r--. 2 boinc boinc    590097 Nov 26 02:43 input.tar.gz
[2025-11-27 02:38:12] -rw-r--r--. 2 boinc boinc     15847 Nov 26 02:43 start_atlas.sh
[2025-11-27 02:38:12] -rw-------. 1 boinc boinc 934798176 Nov 27 02:34 HITS.pool.root.1
[2025-11-27 02:38:12] -rw-------. 1 boinc boinc  13875200 Nov 27 02:38 result.tar.gz
02:38:14 (3601): run_atlas exited; CPU time 322821.997487
02:38:14 (3601): called boinc_finish(0)

</stderr_txt>
]]>

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