Stderr output

<core_client_version>8.2.7</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-23 14:59:08 (25484): vboxwrapper version 26210
2025-11-23 14:59:08 (25484): BOINC client version: 8.2.7
2025-11-23 14:59:08 (25484): Detected: VirtualBox VboxManage Interface (Version: 7.2.0)
2025-11-23 14:59:09 (25484): Successfully copied 'init_data.xml' to the shared directory.
2025-11-23 14:59:09 (25484): Create VM. (boinc_8c3282cc25cbba87, slot#1)
2025-11-23 14:59:09 (25484): Setting Memory Size for VM. (4300MB)
2025-11-23 14:59:10 (25484): Setting CPU Count for VM. (3)
2025-11-23 14:59:10 (25484): Setting Chipset Options for VM.
2025-11-23 14:59:10 (25484): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-23 14:59:10 (25484): Setting Boot Options for VM.
2025-11-23 14:59:11 (25484): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-23 14:59:11 (25484): Enabling VM Network Access.
2025-11-23 14:59:11 (25484): Disabling USB Support for VM.
2025-11-23 14:59:12 (25484): Disabling COM Port Support for VM.
2025-11-23 14:59:12 (25484): Disabling LPT Port Support for VM.
2025-11-23 14:59:12 (25484): Disabling Audio Support for VM.
2025-11-23 14:59:12 (25484): Disabling Clipboard Support for VM.
2025-11-23 14:59:13 (25484): Disabling Drag and Drop Support for VM.
2025-11-23 14:59:13 (25484): Adding storage controller(s) to VM.
2025-11-23 14:59:13 (25484): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-23 14:59:14 (25484): Adding VirtualBox Guest Additions to VM.
2025-11-23 14:59:14 (25484): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-23 14:59:14 (25484): forwarding host port 60715 to guest port 80
2025-11-23 14:59:14 (25484): Enabling remote desktop for VM.
2025-11-23 14:59:15 (25484): Enabling shared directory for VM.
2025-11-23 14:59:16 (25484): Starting VM using VBoxManage interface. (boinc_8c3282cc25cbba87, slot#1)
2025-11-23 14:59:20 (25484): Successfully started VM. (PID = '22956')
2025-11-23 14:59:20 (25484): Reporting VM Process ID to BOINC.
2025-11-23 14:59:20 (25484): Guest Log: BIOS: VirtualBox 7.2.0
2025-11-23 14:59:20 (25484): Guest Log: CPUID EDX: 0x178bfbff
2025-11-23 14:59:20 (25484): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-23 14:59:20 (25484): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-23 14:59:20 (25484): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-23 14:59:20 (25484): Detected: Web Application Enabled (http://localhost:60715)
2025-11-23 14:59:20 (25484): Detected: Remote Desktop Enabled (localhost:60716)
2025-11-23 14:59:20 (25484): Preference change detected
2025-11-23 14:59:20 (25484): Setting CPU throttle for VM. (100%)
2025-11-23 14:59:20 (25484): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-23 14:59:22 (25484): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-23 14:59:22 (25484): Guest Log: BIOS: Booting from Hard Disk...
2025-11-23 14:59:24 (25484): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-23 14:59:24 (25484): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-23 14:59:24 (25484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-23 14:59:24 (25484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-23 14:59:24 (25484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-23 14:59:24 (25484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-23 14:59:24 (25484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-23 14:59:24 (25484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-23 14:59:24 (25484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-23 14:59:24 (25484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-23 14:59:24 (25484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-23 14:59:24 (25484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-23 14:59:24 (25484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-23 14:59:24 (25484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-23 14:59:24 (25484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-23 14:59:24 (25484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-23 14:59:24 (25484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-23 14:59:24 (25484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-23 14:59:24 (25484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-23 14:59:24 (25484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-23 14:59:24 (25484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-23 14:59:24 (25484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-23 14:59:24 (25484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-23 14:59:24 (25484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-23 14:59:24 (25484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-23 14:59:24 (25484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-23 14:59:24 (25484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-23 14:59:24 (25484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-23 14:59:24 (25484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-23 14:59:24 (25484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-23 14:59:24 (25484): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-23 14:59:24 (25484): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-23 14:59:33 (25484): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-23 14:59:33 (25484): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-23 14:59:37 (25484): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-23 14:59:37 (25484): Guest Log: 00:00:00.000078 main     Log opened 2025-11-23T14:59:35.144163000Z
2025-11-23 14:59:37 (25484): Guest Log: 00:00:00.000138 main     OS Product: Linux
2025-11-23 14:59:37 (25484): Guest Log: 00:00:00.000149 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-23 14:59:37 (25484): Guest Log: 00:00:00.000159 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-23 14:59:37 (25484): Guest Log: 00:00:00.000169 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-23 14:59:37 (25484): Guest Log: 00:00:00.000170 main     Process ID: 1287
2025-11-23 14:59:37 (25484): Guest Log: 00:00:00.000170 main     Package type: LINUX_64BITS_GENERIC
2025-11-23 14:59:37 (25484): Guest Log: 00:00:00.000642 main     5.2.32 r132073 started. Verbose level = 0
2025-11-23 14:59:37 (25484): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-23 14:59:37 (25484): Guest Log: [INFO] Mounting shared directory
2025-11-23 14:59:37 (25484): Guest Log: [INFO] Checking for init_data.xml
2025-11-23 14:59:47 (25484): Guest Log: 00:00:10.002651 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 005 672 793 000ns (GuestNow=1 763 927 980 818 120 000 ns GuestLast=1 763 909 975 145 327 000 ns fSetTimeLastLoop=true )
2025-11-23 14:59:49 (25484): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-23 14:59:49 (25484): Guest Log: [INFO] Detected branch: prod
2025-11-23 14:59:49 (25484): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-23 14:59:49 (25484): Guest Log: Copying input files
2025-11-23 14:59:50 (25484): Guest Log: Copied input files into RunAtlas.
2025-11-23 14:59:50 (25484): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-23 14:59:50 (25484): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-23 14:59:50 (25484): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-23 14:59:50 (25484): Guest Log: Further information can be found at the LHC@home message board.
2025-11-23 15:00:20 (25484): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-23 15:00:21 (25484): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-23 15:00:21 (25484): Guest Log: 2.6.3.0 1568 0 32072 153219 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-23 15:00:21 (25484): Guest Log: copied the webapp to /var/www
2025-11-23 15:00:21 (25484): Guest Log: ATHENA_PROC_NUMBER=3
2025-11-23 15:00:21 (25484): Guest Log: ATHENA_CORE_NUMBER=3
2025-11-23 15:00:23 (25484): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-23 15:00:23 (25484): Guest Log:  *** Starting ATLAS job. (PandaID=6893886580 taskID=47523449) ***
2025-11-23 16:39:22 (25484): Status Report: Elapsed Time: '6000.000000'
2025-11-23 16:39:22 (25484): Status Report: CPU Time: '10769.421875'
2025-11-23 18:19:25 (25484): Status Report: Elapsed Time: '12000.000000'
2025-11-23 18:19:25 (25484): Status Report: CPU Time: '28544.031250'
2025-11-23 19:59:27 (25484): Status Report: Elapsed Time: '18000.000000'
2025-11-23 19:59:27 (25484): Status Report: CPU Time: '46414.468750'
2025-11-23 21:39:30 (25484): Status Report: Elapsed Time: '24000.000000'
2025-11-23 21:39:30 (25484): Status Report: CPU Time: '64320.515625'
2025-11-23 23:19:32 (25484): Status Report: Elapsed Time: '30000.000000'
2025-11-23 23:19:32 (25484): Status Report: CPU Time: '82237.875000'
2025-11-24 00:59:35 (25484): Status Report: Elapsed Time: '36000.000000'
2025-11-24 00:59:35 (25484): Status Report: CPU Time: '100163.062500'
2025-11-24 02:39:37 (25484): Status Report: Elapsed Time: '42000.000000'
2025-11-24 02:39:37 (25484): Status Report: CPU Time: '118092.828125'
2025-11-24 04:19:39 (25484): Status Report: Elapsed Time: '48000.000000'
2025-11-24 04:19:39 (25484): Status Report: CPU Time: '136023.046875'
2025-11-24 05:59:41 (25484): Status Report: Elapsed Time: '54000.000000'
2025-11-24 05:59:41 (25484): Status Report: CPU Time: '153962.875000'
2025-11-24 07:39:44 (25484): Status Report: Elapsed Time: '60000.000000'
2025-11-24 07:39:44 (25484): Status Report: CPU Time: '171895.593750'
2025-11-24 09:19:46 (25484): Status Report: Elapsed Time: '66000.000000'
2025-11-24 09:19:46 (25484): Status Report: CPU Time: '189828.750000'
2025-11-24 10:02:04 (25484): Guest Log:  *** Job finished ***
2025-11-24 10:02:04 (25484): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-24 10:02:04 (25484): Guest Log: 2025-11-24 15:01:32,159 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-24 10:02:04 (25484): Guest Log: 2025-11-24 15:01:32,159 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-24 10:02:04 (25484): Guest Log: 2025-11-24 15:01:34,093 | INFO     | [monitor] cgroup control has ended
2025-11-24 10:02:04 (25484): Guest Log: 2025-11-24 15:01:36,039 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140105840617280)>', '<ExcThread(monitor, started 140105046025984)>']
2025-11-24 10:02:04 (25484): Guest Log: 2025-11-24 15:01:36,166 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-24 10:02:04 (25484): Guest Log: 2025-11-24 15:01:36,166 | INFO     | [monitor] control thread has ended
2025-11-24 10:02:04 (25484): Guest Log: 2025-11-24 15:01:41,044 | INFO     | all workflow threads have been joined
2025-11-24 10:02:04 (25484): Guest Log: 2025-11-24 15:01:41,045 | INFO     | end of generic workflow (traces error code: 0)
2025-11-24 10:02:04 (25484): Guest Log: 2025-11-24 15:01:41,045 | INFO     | traces error code: 0
2025-11-24 10:02:04 (25484): Guest Log: 2025-11-24 15:01:41,045 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-24 10:02:04 (25484): Guest Log: 2025-11-24 15:01:41,143 [wrapper] ==== pilot stdout END ====
2025-11-24 10:02:04 (25484): Guest Log: 2025-11-24 15:01:41,146 [wrapper] ==== wrapper stdout RESUME ====
2025-11-24 10:02:04 (25484): Guest Log: 2025-11-24 15:01:41,148 [wrapper] pilotpid: 6037
2025-11-24 10:02:04 (25484): Guest Log: 2025-11-24 15:01:41,151 [wrapper] Pilot exit status: 0
2025-11-24 10:02:04 (25484): Guest Log: 2025-11-24 15:01:41,160 [wrapper] pandaids: 6893886580
2025-11-24 10:02:04 (25484): Guest Log: 2025-11-24 15:01:41,180 [wrapper] cleanup supervisor_pilot  7718 6038
2025-11-24 10:02:04 (25484): Guest Log: 2025-11-24 15:01:41,182 [wrapper] Test setup, not cleaning
2025-11-24 10:02:04 (25484): Guest Log: 2025-11-24 15:01:41,185 [wrapper] apfmon messages muted
2025-11-24 10:02:04 (25484): Guest Log: 2025-11-24 15:01:41,188 [wrapper] ==== wrapper stdout END ====
2025-11-24 10:02:04 (25484): Guest Log: 2025-11-24 15:01:41,190 [wrapper] ==== wrapper stderr END ====
2025-11-24 10:02:04 (25484): Guest Log:  *** Error codes and diagnostics ***
2025-11-24 10:02:04 (25484): Guest Log:     "exeErrorCode": 0,
2025-11-24 10:02:04 (25484): Guest Log:     "exeErrorDiag": "",
2025-11-24 10:02:04 (25484): Guest Log:     "pilotErrorCode": 0,
2025-11-24 10:02:04 (25484): Guest Log:     "pilotErrorDiag": "",
2025-11-24 10:02:04 (25484): Guest Log:  *** Listing of results directory ***
2025-11-24 10:02:04 (25484): Guest Log: total 927020
2025-11-24 10:02:04 (25484): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 20 22:26 pilot3.tar.gz
2025-11-24 10:02:04 (25484): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 20 22:44 runpilot2-wrapper.sh
2025-11-24 10:02:04 (25484): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 20 22:44 queuedata.json
2025-11-24 10:02:04 (25484): Guest Log: -rwxr-xr-x. 1 atlas atlas     10550 Nov 23 19:59 init_data.xml
2025-11-24 10:02:04 (25484): Guest Log: -rwxr-xr-x. 1 atlas atlas    590096 Nov 23 19:59 input.tar.gz
2025-11-24 10:02:04 (25484): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 23 19:59 start_atlas.sh
2025-11-24 10:02:04 (25484): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 23 19:59 EVNT.47493127._000958.pool.root.1 -> /data/./ATLAS.root_0
2025-11-24 10:02:04 (25484): Guest Log: -rw-r--r--. 1 atlas atlas      2786 Nov 23 20:00 pandaJob.out
2025-11-24 10:02:04 (25484): Guest Log: -rw-------. 1 atlas atlas    989786 Nov 23 20:08 agis_schedconf.cvmfs.json
2025-11-24 10:02:04 (25484): Guest Log: drwx------. 5 atlas atlas      4096 Nov 23 20:08 pilot3
2025-11-24 10:02:04 (25484): Guest Log: -rw-------. 1 atlas atlas 923607455 Nov 24 15:00 HITS.47523449._009580.pool.root.1
2025-11-24 10:02:04 (25484): Guest Log: -rw-------. 1 atlas atlas      1041 Nov 24 15:00 memory_monitor_summary.json
2025-11-24 10:02:04 (25484): Guest Log: -rw-------. 1 atlas atlas   1516227 Nov 24 15:00 agis_ddmendpoints.agis.ALL.json
2025-11-24 10:02:04 (25484): Guest Log: -rw-------. 1 atlas atlas   1669727 Nov 24 15:00 log.47523449._009580.job.log.tgz.1
2025-11-24 10:02:04 (25484): Guest Log: -rw-------. 1 atlas atlas      8663 Nov 24 15:01 heartbeat.json
2025-11-24 10:02:04 (25484): Guest Log: -rw-------. 1 atlas atlas        95 Nov 24 15:01 pilot_heartbeat.json
2025-11-24 10:02:04 (25484): Guest Log: -rw-------. 1 atlas atlas      4991 Nov 24 15:01 pilotlog.txt
2025-11-24 10:02:04 (25484): Guest Log: -rw-------. 1 atlas atlas   9232665 Nov 24 15:01 log.47523449._009580.job.log.1
2025-11-24 10:02:04 (25484): Guest Log: -rw-------. 1 atlas atlas       353 Nov 24 15:01 output.list
2025-11-24 10:02:04 (25484): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 24 15:01 runtime_log
2025-11-24 10:02:04 (25484): Guest Log: -rw-------. 1 atlas atlas  10926080 Nov 24 15:01 result.tar.gz
2025-11-24 10:02:04 (25484): Guest Log: -rw-------. 1 atlas atlas       658 Nov 24 15:01 xGENDmKZSg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmndIKDmXihROn.diag
2025-11-24 10:02:04 (25484): Guest Log: -rw-r--r--. 1 atlas atlas      8738 Nov 24 15:01 runtime_log.err
2025-11-24 10:02:04 (25484): Guest Log: Looking for outputfile HITS.47523449._009580.pool.root.1
2025-11-24 10:02:04 (25484): Guest Log: HITS file was successfully produced
2025-11-24 10:02:04 (25484): Guest Log: -rw-------. 1 atlas atlas 923607455 Nov 24 15:00 /home/atlas/RunAtlas/HITS.47523449._009580.pool.root.1
2025-11-24 10:02:06 (25484): Guest Log: Successfully finished the ATLAS job!
2025-11-24 10:02:06 (25484): Guest Log: Copying the results back to the shared directory!
2025-11-24 10:02:06 (25484): Guest Log:  *** Contents of shared directory: ***
2025-11-24 10:02:06 (25484): Guest Log: total 1315412
2025-11-24 10:02:06 (25484): Guest Log: -rwxrwxrwx. 1 root root 411819214 Nov 23 19:59 ATLAS.root_0
2025-11-24 10:02:06 (25484): Guest Log: -rwxrwxrwx. 1 root root 923607455 Nov 24  2025 HITS.pool.root.1
2025-11-24 10:02:06 (25484): Guest Log: -rwxrwxrwx. 1 root root     10550 Nov 23 19:59 init_data.xml
2025-11-24 10:02:06 (25484): Guest Log: -rwxrwxrwx. 1 root root    590096 Nov 23 07:20 input.tar.gz
2025-11-24 10:02:06 (25484): Guest Log: -rwxrwxrwx. 1 root root  10926080 Nov 24  2025 result.tar.gz
2025-11-24 10:02:06 (25484): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 23 07:20 start_atlas.sh
2025-11-24 10:02:06 (25484): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-24 10:02:06 (25484): VM Completion File Detected.
2025-11-24 10:02:06 (25484): Powering off VM.
2025-11-24 10:02:07 (25484): Successfully stopped VM.
2025-11-24 10:02:07 (25484): Deregistering VM. (boinc_8c3282cc25cbba87, slot#1)
2025-11-24 10:02:07 (25484): Removing network bandwidth throttle group from VM.
2025-11-24 10:02:07 (25484): Removing VM from VirtualBox.
2025-11-24 10:02:12 (25484): called boinc_finish(0)

</stderr_txt>
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