Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:50:40 (3400970): wrapper (7.7.26015): starting
06:50:40 (3400970): wrapper: running run_atlas (--nthreads 3)
[2025-11-23 06:50:40] Arguments: --nthreads 3
[2025-11-23 06:50:40] Threads: 3
[2025-11-23 06:50:40] Checking for CVMFS
[2025-11-23 06:50:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 06:50:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 06:50:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 06:50:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 06:50:40] 2.9.2.0 2886065 3804 79812 153198 2 81 6481165 36864001 0 130560 0 1410630 99.975 122019 4172 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-23 06:50:40] CVMFS is ok
[2025-11-23 06:50:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 06:50:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 06:50:40] Further information can be found at the LHC@home message board.
[2025-11-23 06:50:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 06:50:40] Checking for apptainer binary...
[2025-11-23 06:50:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 06:50:40] Running /usr/bin/apptainer --version
[2025-11-23 06:50:40] apptainer version 1.4.1-1.1
[2025-11-23 06:50:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 06:50:40] thA330a
[2025-11-23 06:50:40] apptainer works
[2025-11-23 06:50:40] Set ATHENA_PROC_NUMBER=3
[2025-11-23 06:50:40] Set ATHENA_CORE_NUMBER=3
[2025-11-23 06:50:40] Starting ATLAS job with PandaID=6895337482
[2025-11-23 06:50:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 14:42:33]  *** The last 200 lines of the pilot log: ***
[2025-11-23 14:42:33] 2025-11-23 13:41:51,234 | INFO     | update_server=False
[2025-11-23 14:42:33] 2025-11-23 13:41:51,234 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 14:42:33] 2025-11-23 13:41:51,234 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 14:42:33] 2025-11-23 13:41:51,471 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 14:42:33] 2025-11-23 13:41:51,471 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 14:42:33] 2025-11-23 13:41:51,472 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 14:42:33] 2025-11-23 13:41:51,472 | INFO     | will abort loop
[2025-11-23 14:42:33] 2025-11-23 13:41:51,672 | INFO     | all data control threads have been joined
[2025-11-23 14:42:33] 2025-11-23 13:41:52,197 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 14:42:33] 2025-11-23 13:41:52,237 | INFO     | [job] retrieve thread has finished
[2025-11-23 14:42:33] 2025-11-23 13:41:52,239 | INFO     | [job] queue monitor thread has finished
[2025-11-23 14:42:33] 2025-11-23 13:41:52,265 | INFO     | all payload control threads have been joined
[2025-11-23 14:42:33] 2025-11-23 13:41:52,407 | INFO     | [data] copytool_in thread has finished
[2025-11-23 14:42:33] 2025-11-23 13:41:52,433 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 14:42:33] 2025-11-23 13:41:52,477 | INFO     | [job] job monitor thread has finished
[2025-11-23 14:42:33] 2025-11-23 13:41:52,510 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 14:42:33] 2025-11-23 13:41:52,530 | INFO     | [job] validate thread has finished
[2025-11-23 14:42:33] 2025-11-23 13:41:52,600 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 14:42:33] 2025-11-23 13:41:52,630 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 14:42:33] 2025-11-23 13:41:52,674 | INFO     | [data] control thread has finished
[2025-11-23 14:42:33] 2025-11-23 13:41:52,860 | INFO     | all job control threads have been joined
[2025-11-23 14:42:33] 2025-11-23 13:41:53,266 | INFO     | [payload] control thread has finished
[2025-11-23 14:42:33] 2025-11-23 13:41:53,271 | INFO     | [payload] failed_post thread has finished
[2025-11-23 14:42:33] 2025-11-23 13:41:53,417 | INFO     | [payload] validate_post thread has finished
[2025-11-23 14:42:33] 2025-11-23 13:41:53,549 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 14:42:33] 2025-11-23 13:41:53,866 | INFO     | [job] control thread has finished
[2025-11-23 14:42:33] 2025-11-23 13:41:54,636 | INFO     | [data] copytool_out thread has finished
[2025-11-23 14:42:33] 2025-11-23 13:41:56,203 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 14:42:33] 2025-11-23 13:42:21,957 | INFO     | PID=3404693 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 14:42:33] 2025-11-23 13:42:21,958 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 14:42:33] 2025-11-23 13:42:21,958 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 14:42:33] 2025-11-23 13:42:21,958 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 14:42:33] 2025-11-23 13:42:28,087 | INFO     | [monitor] cgroup control has ended
[2025-11-23 14:42:33] 2025-11-23 13:42:28,749 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140240160163648)>', '<ExcThread(monitor, started 140239515404032)>']
[2025-11-23 14:42:33] 2025-11-23 13:42:28,978 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 14:42:33] 2025-11-23 13:42:28,979 | INFO     | [monitor] control thread has ended
[2025-11-23 14:42:33] 2025-11-23 13:42:33,773 | INFO     | all workflow threads have been joined
[2025-11-23 14:42:33] 2025-11-23 13:42:33,773 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 14:42:33] 2025-11-23 13:42:33,773 | INFO     | traces error code: 0
[2025-11-23 14:42:33] 2025-11-23 13:42:33,773 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 14:42:33] 2025-11-23 13:42:33,823 [wrapper] ==== pilot stdout END ====
[2025-11-23 14:42:33] 2025-11-23 13:42:33,826 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 14:42:33] 2025-11-23 13:42:33,828 [wrapper] pilotpid: 3404693
[2025-11-23 14:42:33] 2025-11-23 13:42:33,830 [wrapper] Pilot exit status: 0
[2025-11-23 14:42:33] 2025-11-23 13:42:33,838 [wrapper] pandaids: 6895337482
[2025-11-23 14:42:33] 2025-11-23 13:42:33,855 [wrapper] cleanup supervisor_pilot 3462377 3404694
[2025-11-23 14:42:33] 2025-11-23 13:42:33,858 [wrapper] Test setup, not cleaning
[2025-11-23 14:42:33] 2025-11-23 13:42:33,860 [wrapper] apfmon messages muted
[2025-11-23 14:42:33] 2025-11-23 13:42:33,862 [wrapper] ==== wrapper stdout END ====
[2025-11-23 14:42:33] 2025-11-23 13:42:33,865 [wrapper] ==== wrapper stderr END ====
[2025-11-23 14:42:33]  *** Error codes and diagnostics ***
[2025-11-23 14:42:33]     "exeErrorCode": 0,
[2025-11-23 14:42:33]     "exeErrorDiag": "",
[2025-11-23 14:42:33]     "pilotErrorCode": 0,
[2025-11-23 14:42:33]     "pilotErrorDiag": "",
[2025-11-23 14:42:33]  *** Listing of results directory ***
[2025-11-23 14:42:33] total 1311184
[2025-11-23 14:42:33] -rw-r--r-- 1 boinc boinc    576529 Nov 22 08:52 pilot3.tar.gz
[2025-11-23 14:42:33] -rwx------ 1 boinc boinc     36292 Nov 22 09:07 runpilot2-wrapper.sh
[2025-11-23 14:42:33] -rw-r--r-- 1 boinc boinc      5112 Nov 22 09:07 queuedata.json
[2025-11-23 14:42:33] -rw-r--r-- 1 boinc boinc       100 Nov 23 06:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 14:42:33] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 06:50 run_atlas
[2025-11-23 14:42:33] -rw-r--r-- 1 boinc boinc       105 Nov 23 06:50 job.xml
[2025-11-23 14:42:33] -rw-r--r-- 2 boinc boinc 409627589 Nov 23 06:50 EVNT.47483658._000308.pool.root.1
[2025-11-23 14:42:33] drwxrwx--x 2 boinc boinc      4096 Nov 23 06:50 shared
[2025-11-23 14:42:33] -rw-r--r-- 2 boinc boinc    590100 Nov 23 06:50 input.tar.gz
[2025-11-23 14:42:33] -rw-r--r-- 2 boinc boinc     15847 Nov 23 06:50 start_atlas.sh
[2025-11-23 14:42:33] -rw-r--r-- 1 boinc boinc         0 Nov 23 06:50 boinc_setup_complete
[2025-11-23 14:42:33] -rw-r--r-- 1 boinc boinc      6439 Nov 23 06:50 init_data.xml
[2025-11-23 14:42:33] -rw-r--r-- 1 boinc boinc         0 Nov 23 06:50 boinc_lockfile
[2025-11-23 14:42:33] -rw-r--r-- 1 boinc boinc      2784 Nov 23 06:50 pandaJob.out
[2025-11-23 14:42:33] -rw------- 1 boinc boinc    989784 Nov 23 06:50 agis_schedconf.cvmfs.json
[2025-11-23 14:42:33] drwx------ 5 boinc boinc      4096 Nov 23 06:50 pilot3
[2025-11-23 14:42:33] -rw-r--r-- 1 boinc boinc       531 Nov 23 14:37 boinc_task_state.xml
[2025-11-23 14:42:33] -rw------- 1 boinc boinc 918859113 Nov 23 14:41 HITS.47556137._003047.pool.root.1
[2025-11-23 14:42:33] -rw------- 1 boinc boinc      1024 Nov 23 14:41 memory_monitor_summary.json
[2025-11-23 14:42:33] -rw------- 1 boinc boinc   1526164 Nov 23 14:41 agis_ddmendpoints.agis.ALL.json
[2025-11-23 14:42:33] -rw------- 1 boinc boinc   1157045 Nov 23 14:41 log.47556137._003047.job.log.tgz.1
[2025-11-23 14:42:33] -rw------- 1 boinc boinc      8563 Nov 23 14:41 heartbeat.json
[2025-11-23 14:42:33] -rw------- 1 boinc boinc        95 Nov 23 14:42 pilot_heartbeat.json
[2025-11-23 14:42:33] -rw-r--r-- 1 boinc boinc        28 Nov 23 14:42 wrapper_checkpoint.txt
[2025-11-23 14:42:33] -rw-r--r-- 1 boinc boinc      8192 Nov 23 14:42 boinc_mmap_file
[2025-11-23 14:42:33] -rw------- 1 boinc boinc      4938 Nov 23 14:42 pilotlog.txt
[2025-11-23 14:42:33] -rw------- 1 boinc boinc   3976694 Nov 23 14:42 log.47556137._003047.job.log.1
[2025-11-23 14:42:33] -rw------- 1 boinc boinc       353 Nov 23 14:42 output.list
[2025-11-23 14:42:33] -rw-r--r-- 1 boinc boinc       620 Nov 23 14:42 runtime_log
[2025-11-23 14:42:33] -rw------- 1 boinc boinc   5150720 Nov 23 14:42 result.tar.gz
[2025-11-23 14:42:33] -rw-r--r-- 1 boinc boinc      8903 Nov 23 14:42 runtime_log.err
[2025-11-23 14:42:33] -rw------- 1 boinc boinc       667 Nov 23 14:42 JfOKDmQpxg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmS1HKDmX1DX5n.diag
[2025-11-23 14:42:33] -rw-r--r-- 1 boinc boinc      7645 Nov 23 14:42 stderr.txt
[2025-11-23 14:42:33] HITS file was successfully produced:
[2025-11-23 14:42:33] -rw------- 1 boinc boinc 918859113 Nov 23 14:41 shared/HITS.pool.root.1
[2025-11-23 14:42:33]  *** Contents of shared directory: ***
[2025-11-23 14:42:33] total 1302984
[2025-11-23 14:42:33] -rw-r--r-- 2 boinc boinc 409627589 Nov 23 06:50 ATLAS.root_0
[2025-11-23 14:42:33] -rw-r--r-- 2 boinc boinc    590100 Nov 23 06:50 input.tar.gz
[2025-11-23 14:42:33] -rw-r--r-- 2 boinc boinc     15847 Nov 23 06:50 start_atlas.sh
[2025-11-23 14:42:33] -rw------- 1 boinc boinc 918859113 Nov 23 14:41 HITS.pool.root.1
[2025-11-23 14:42:33] -rw------- 1 boinc boinc   5150720 Nov 23 14:42 result.tar.gz
14:42:35 (3400970): run_atlas exited; CPU time 83442.211306
14:42:35 (3400970): called boinc_finish(0)

</stderr_txt>
]]>

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