Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:36:57 (4143388): wrapper (7.7.26015): starting
00:36:57 (4143388): wrapper: running run_atlas (--nthreads 10)
[2025-11-23 00:36:57] Arguments: --nthreads 10
[2025-11-23 00:36:57] Threads: 10
[2025-11-23 00:36:57] Checking for CVMFS
[2025-11-23 00:36:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:36:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:36:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:37:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:37:00] 2.13.2.0 6633 28995 190056 153198 1 521 31707641 40960000 10022 16776704 0 21453025 99.666 17167992 32439 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 00:37:00] CVMFS is ok
[2025-11-23 00:37:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:37:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 00:37:00] Further information can be found at the LHC@home message board.
[2025-11-23 00:37:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:37:00] Checking for apptainer binary...
[2025-11-23 00:37:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:37:00] Running /usr/bin/apptainer --version
[2025-11-23 00:37:00] apptainer version 1.4.4-1.el9
[2025-11-23 00:37:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:37:01] c-211-10.aglt2.org
[2025-11-23 00:37:01] apptainer works
[2025-11-23 00:37:01] Set ATHENA_PROC_NUMBER=10
[2025-11-23 00:37:01] Set ATHENA_CORE_NUMBER=10
[2025-11-23 00:37:01] Starting ATLAS job with PandaID=6895337470
[2025-11-23 00:37:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 13:57:17]  *** The last 200 lines of the pilot log: ***
[2025-11-24 13:57:17] 2025-11-24 12:06:18,782 | INFO     | time since job start (109669s) is within the limit (172800.0s)
[2025-11-24 13:57:17] 2025-11-24 12:06:20,714 | INFO     | monitor loop #6009: job 0:6895337470 is in state 'finished'
[2025-11-24 13:57:17] 2025-11-24 12:06:20,714 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:57:17] 2025-11-24 12:06:20,824 | INFO     | time since job start (109671s) is within the limit (172800.0s)
[2025-11-24 13:57:17] 2025-11-24 12:06:22,841 | INFO     | time since job start (109673s) is within the limit (172800.0s)
[2025-11-24 13:57:17] 2025-11-24 12:06:23,228 | INFO     | monitor loop #6010: job 0:6895337470 is in state 'finished'
[2025-11-24 13:57:17] 2025-11-24 12:06:23,281 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:57:17] 2025-11-24 12:06:25,816 | INFO     | monitor loop #6011: job 0:6895337470 is in state 'finished'
[2025-11-24 13:57:17] 2025-11-24 12:06:25,816 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:57:17] 2025-11-24 12:06:28,450 | INFO     | monitor loop #6012: job 0:6895337470 is in state 'finished'
[2025-11-24 13:57:17] 2025-11-24 12:06:28,495 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:57:17] 2025-11-24 12:06:28,833 | INFO     | PID=4148271 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 13:57:17] 2025-11-24 12:06:28,834 | INFO     | .. there are 10 such processes running
[2025-11-24 13:57:17] 2025-11-24 12:06:29,263 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 13:57:17] 2025-11-24 12:06:29,355 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2345.2839166666668
[2025-11-24 13:57:17] 2025-11-24 12:06:29,519 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895337470/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 13:57:17] 2025-11-24 12:06:29,520 | INFO     | extracted standard info from prmon json
[2025-11-24 13:57:17] 2025-11-24 12:06:29,523 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 13:57:17] 2025-11-24 12:06:29,523 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 13:57:17] 2025-11-24 12:06:29,877 | INFO     | time since job start (109680s) is within the limit (172800.0s)
[2025-11-24 13:57:17] 2025-11-24 12:06:30,145 | INFO     | fitting pss+swap vs Time
[2025-11-24 13:57:17] 2025-11-24 12:06:30,181 | INFO     | sum of square deviations: 1790326188043.3252
[2025-11-24 13:57:17] 2025-11-24 12:06:31,287 | INFO     | monitor loop #6013: job 0:6895337470 is in state 'finished'
[2025-11-24 13:57:17] 2025-11-24 12:06:31,287 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:57:17] 2025-11-24 12:06:31,391 | INFO     | sum of deviations: 1810134306512.8274
[2025-11-24 13:57:17] 2025-11-24 12:06:31,392 | INFO     | mean x: 1763931196.5919733
[2025-11-24 13:57:17] 2025-11-24 12:06:31,392 | INFO     | mean y: 3081102.1950947605
[2025-11-24 13:57:17] 2025-11-24 12:06:31,392 | INFO     | intersect: -1780366179.4251218
[2025-11-24 13:57:17] 2025-11-24 12:06:31,436 | INFO     | chi2: 73.61009827552635
[2025-11-24 13:57:17] 2025-11-24 12:06:31,486 | INFO     | sum of square deviations: 1775401455259.7473
[2025-11-24 13:57:17] 2025-11-24 12:06:32,329 | INFO     | time since job start (109683s) is within the limit (172800.0s)
[2025-11-24 13:57:17] 2025-11-24 12:06:32,557 | INFO     | sum of deviations: 2587988873991.479
[2025-11-24 13:57:17] 2025-11-24 12:06:32,558 | INFO     | mean x: 1763931044.1089995
[2025-11-24 13:57:17] 2025-11-24 12:06:32,558 | INFO     | mean y: 3089049.397428731
[2025-11-24 13:57:17] 2025-11-24 12:06:32,558 | INFO     | intersect: -2568179495.594489
[2025-11-24 13:57:17] 2025-11-24 12:06:32,601 | INFO     | chi2: 68.52565319223169
[2025-11-24 13:57:17] 2025-11-24 12:06:32,602 | INFO     | current chi2=68.52565319223169 (change=6.9072657181672685 %)
[2025-11-24 13:57:17] 2025-11-24 12:06:32,602 | INFO     | right removable region: 1788
[2025-11-24 13:57:17] 2025-11-24 12:06:32,641 | INFO     | sum of square deviations: 1775394897770.9666
[2025-11-24 13:57:17] 2025-11-24 12:06:32,733 | INFO     | sum of deviations: 997679778892.0837
[2025-11-24 13:57:17] 2025-11-24 12:06:32,734 | INFO     | mean x: 1763931349.1084404
[2025-11-24 13:57:17] 2025-11-24 12:06:32,734 | INFO     | mean y: 3089400.6489659026
[2025-11-24 13:57:17] 2025-11-24 12:06:32,734 | INFO     | intersect: -988148458.9217843
[2025-11-24 13:57:17] 2025-11-24 12:06:32,737 | INFO     | chi2: 69.08801150310391
[2025-11-24 13:57:17] 2025-11-24 12:06:32,737 | INFO     | current chi2=69.08801150310391 (change=6.1432967464545944 %)
[2025-11-24 13:57:17] 2025-11-24 12:06:32,738 | INFO     | left removable region: 10
[2025-11-24 13:57:17] 2025-11-24 12:06:32,740 | INFO     | sum of square deviations: 1742846393680.48
[2025-11-24 13:57:17] 2025-11-24 12:06:32,835 | INFO     | sum of deviations: 1203427923447.589
[2025-11-24 13:57:17] 2025-11-24 12:06:32,835 | INFO     | mean x: 1763931318.6462317
[2025-11-24 13:57:17] 2025-11-24 12:06:32,836 | INFO     | mean y: 3106524.163104612
[2025-11-24 13:57:17] 2025-11-24 12:06:32,836 | INFO     | intersect: -1214880449.100687
[2025-11-24 13:57:17] 2025-11-24 12:06:32,838 | INFO     | chi2: 59.37633316365113
[2025-11-24 13:57:17] 2025-11-24 12:06:32,839 | INFO     | current memory leak: 0.69 B/s (using 1778 data points, chi2=59.38)
[2025-11-24 13:57:17] 2025-11-24 12:06:32,841 | INFO     | could have reported an average CPU frequency of 2466 MHz (62 samples)
[2025-11-24 13:57:17] 2025-11-24 12:06:32,842 | INFO     | ..............................
[2025-11-24 13:57:17] 2025-11-24 12:06:32,842 | INFO     | . Timing measurements:
[2025-11-24 13:57:17] 2025-11-24 12:06:32,842 | INFO     | . get job = 0 s
[2025-11-24 13:57:17] 2025-11-24 12:06:32,842 | INFO     | . initial setup = 6 s
[2025-11-24 13:57:17] 2025-11-24 12:06:32,842 | INFO     | . payload setup = 65 s
[2025-11-24 13:57:17] 2025-11-24 12:06:32,842 | INFO     | . stage-in = 0 s
[2025-11-24 13:57:17] 2025-11-24 12:06:32,842 | INFO     | . payload execution = 109431 s
[2025-11-24 13:57:17] 2025-11-24 12:06:32,842 | INFO     | . stage-out = 34 s
[2025-11-24 13:57:17] 2025-11-24 12:06:32,843 | INFO     | . log creation = 15 s
[2025-11-24 13:57:17] 2025-11-24 12:06:32,843 | INFO     | ..............................
[2025-11-24 13:57:17] 2025-11-24 12:06:33,779 | INFO     | 
[2025-11-24 13:57:17] 2025-11-24 12:06:33,831 | INFO     | job summary report
[2025-11-24 13:57:17] 2025-11-24 12:06:33,831 | INFO     | --------------------------------------------------
[2025-11-24 13:57:17] 2025-11-24 12:06:33,831 | INFO     | PanDA job id: 6895337470
[2025-11-24 13:57:17] 2025-11-24 12:06:33,831 | INFO     | task id: 47556137
[2025-11-24 13:57:17] 2025-11-24 12:06:33,832 | INFO     | errors: (none)
[2025-11-24 13:57:17] 2025-11-24 12:06:33,832 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 13:57:17] 2025-11-24 12:06:33,832 | INFO     | pilot state: finished 
[2025-11-24 13:57:17] 2025-11-24 12:06:33,832 | INFO     | transexitcode: 0
[2025-11-24 13:57:17] 2025-11-24 12:06:33,832 | INFO     | exeerrorcode: 0
[2025-11-24 13:57:17] 2025-11-24 12:06:33,832 | INFO     | exeerrordiag: 
[2025-11-24 13:57:17] 2025-11-24 12:06:33,832 | INFO     | exitcode: 0
[2025-11-24 13:57:17] 2025-11-24 12:06:33,833 | INFO     | exitmsg: OK
[2025-11-24 13:57:17] 2025-11-24 12:06:33,833 | INFO     | cpuconsumptiontime: 363061 s
[2025-11-24 13:57:17] 2025-11-24 12:06:33,833 | INFO     | nevents: 1000
[2025-11-24 13:57:17] 2025-11-24 12:06:33,833 | INFO     | neventsw: 0
[2025-11-24 13:57:17] 2025-11-24 12:06:33,833 | INFO     | pid: 4158030
[2025-11-24 13:57:17] 2025-11-24 12:06:33,833 | INFO     | pgrp: 4158030
[2025-11-24 13:57:17] 2025-11-24 12:06:33,833 | INFO     | corecount: 10
[2025-11-24 13:57:17] 2025-11-24 12:06:33,833 | INFO     | event service: False
[2025-11-24 13:57:17] 2025-11-24 12:06:33,834 | INFO     | sizes: {0: 2297928, 1: 2298613, 2: 2298812, 13: 2298812, 24: 2298868, 35: 2298896, 41: 2299314, 46: 2299342, 109500: 2373887, 109501: 2373886, 109537: 2384063, 109
[2025-11-24 13:57:17] 2025-11-24 12:06:33,834 | INFO     | --------------------------------------------------
[2025-11-24 13:57:17] 2025-11-24 12:06:33,834 | INFO     | 
[2025-11-24 13:57:17] 2025-11-24 12:06:33,834 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-24 13:57:17] 2025-11-24 12:06:34,144 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 13:57:17] 2025-11-24 12:06:34,144 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 13:57:17] 2025-11-24 12:06:34,145 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 13:57:17] 2025-11-24 12:06:34,145 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 13:57:17] 2025-11-24 12:06:34,145 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 13:57:17] 2025-11-24 12:06:34,145 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 13:57:17] 2025-11-24 12:06:34,145 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 13:57:17] 2025-11-24 12:06:34,145 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 13:57:17] 2025-11-24 12:06:34,145 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 13:57:17] 2025-11-24 12:06:34,146 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 13:57:17] 2025-11-24 12:06:34,146 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 13:57:17] 2025-11-24 12:06:34,146 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 13:57:17] 2025-11-24 12:06:34,146 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 13:57:17] 2025-11-24 12:06:34,146 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 13:57:17] 2025-11-24 12:06:34,146 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 13:57:17] 2025-11-24 12:06:34,146 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 13:57:17] 2025-11-24 12:06:34,147 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 13:57:17] 2025-11-24 12:06:34,163 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 13:57:17] 2025-11-24 12:06:34,163 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 13:57:17] 2025-11-24 12:06:34,163 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 13:57:17] 2025-11-24 12:06:34,164 | INFO     | job 6895337470 has completed (purged errors)
[2025-11-24 13:57:17] 2025-11-24 12:06:34,164 | INFO     | overall cleanup function is called
[2025-11-24 13:57:17] 2025-11-24 12:06:35,395 | INFO     | --- collectZombieJob: --- 10, [4158030]
[2025-11-24 13:57:17] 2025-11-24 12:06:35,395 | INFO     | zombie collector waiting for pid 4158030
[2025-11-24 13:57:17] 2025-11-24 12:06:35,395 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 13:57:17] 2025-11-24 12:06:35,396 | INFO     | collected zombie processes
[2025-11-24 13:57:17] 2025-11-24 12:06:35,396 | INFO     | will attempt to kill all subprocesses of pid=4158030
[2025-11-24 13:57:17] 2025-11-24 12:06:38,974 | INFO     | process IDs to be killed: [4158030] (in reverse order)
[2025-11-24 13:57:17] 2025-11-24 12:06:39,917 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 13:57:17] 2025-11-24 12:06:39,917 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 13:57:17] 2025-11-24 12:06:40,037 | INFO     | did not find any defunct processes belonging to 4158030
[2025-11-24 13:57:17] 2025-11-24 12:06:40,161 | INFO     | did not find any defunct processes belonging to 4158030
[2025-11-24 13:57:17] 2025-11-24 12:06:40,187 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 13:57:17] 2025-11-24 12:06:40,188 | INFO     | ready for new job
[2025-11-24 13:57:17] 2025-11-24 12:06:40,188 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 13:57:17] 2025-11-24 12:06:40,228 | INFO     | ***************************************
[2025-11-24 13:57:17] 2025-11-24 12:06:40,228 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 13:57:17] 2025-11-24 12:06:40,228 | INFO     | ***************************************
[2025-11-24 13:57:17] 2025-11-24 12:06:40,228 | INFO     | 
[2025-11-24 13:57:17] 2025-11-24 12:06:40,274 | INFO     | architecture information:
[2025-11-24 13:57:17] 2025-11-24 12:06:40,308 | INFO     | executing command: cat /etc/os-release
[2025-11-24 13:57:17] 2025-11-24 12:06:40,410 | INFO     | cat /etc/os-release:
[2025-11-24 13:57:17] NAME="CentOS Linux"
[2025-11-24 13:57:17] VERSION="7 (Core)"
[2025-11-24 13:57:17] ID="centos"
[2025-11-24 13:57:17] ID_LIKE="rhel fedora"
[2025-11-24 13:57:17] VERSION_ID="7"
[2025-11-24 13:57:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 13:57:17] ANSI_COLOR="0;31"
[2025-11-24 13:57:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 13:57:17] HOME_URL="https://www.centos.org/"
[2025-11-24 13:57:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 13:57:17] 
[2025-11-24 13:57:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 13:57:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 13:57:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 13:57:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 13:57:17] 
[2025-11-24 13:57:17] 2025-11-24 12:06:40,411 | INFO     | ***************************************
[2025-11-24 13:57:17] 2025-11-24 12:06:40,914 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-24 13:57:17] 2025-11-24 12:06:41,162 | INFO     | sufficient remaining disk space (59818115072 B)
[2025-11-24 13:57:17] 2025-11-24 12:06:41,163 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 13:57:17] 2025-11-24 12:06:41,163 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 13:57:17] 2025-11-24 12:06:41,163 | INFO     | update_server=False
[2025-11-24 13:57:17] 2025-11-24 12:06:41,164 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 13:57:17] 2025-11-24 12:06:41,181 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 13:57:17] 2025-11-24 12:06:41,181 | INFO     | aborting loop
[2025-11-24 13:57:17] 2025-11-24 12:06:41,188 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 13:57:17] 2025-11-24 12:06:41,510 | INFO     | all job control threads have been joined
[2025-11-24 13:57:17] 2025-11-24 12:06:41,730 | INFO     | all payload control threads have been joined
[2025-11-24 13:57:17] 2025-11-24 12:06:41,861 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 13:57:17] 2025-11-24 12:06:42,025 | INFO     | all data control threads have been joined
[2025-11-24 13:57:17] 2025-11-24 12:06:42,170 | INFO     | [job] retrieve thread has finished
[2025-11-24 13:57:17] 2025-11-24 12:06:42,173 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 13:57:17] 2025-11-24 12:06:42,189 | INFO     | [job] job monitor thread has finished
[2025-11-24 13:57:17] 2025-11-24 12:06:42,269 | INFO     | [payload] validate_post thread has finished
[2025-11-24 13:57:17] 2025-11-24 12:06:42,276 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 13:57:17] 2025-11-24 12:06:42,285 | INFO     | [data] copytool_in thread has finished
[2025-11-24 13:57:17] 2025-11-24 12:06:42,328 | INFO     | [payload] failed_post thread has finished
[2025-11-24 13:57:17] 2025-11-24 12:06:42,516 | INFO     | [job] control thread has finished
[2025-11-24 13:57:17] 2025-11-24 12:06:42,736 | INFO     | [payload] control thread has finished
[2025-11-24 13:57:17] 2025-11-24 12:06:42,890 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 13:57:17] 2025-11-24 12:06:42,890 | INFO     | [job] validate thread has finished
[2025-11-24 13:57:17] 2025-11-24 12:06:42,896 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 13:57:17] 2025-11-24 12:06:43,035 | INFO     | [data] control thread has finished
[2025-11-24 13:57:17] 2025-11-24 12:06:43,195 | INFO     | [data] copytool_out thread has finished
[2025-11-24 13:57:17] 2025-11-24 12:06:43,370 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 13:57:17] 2025-11-24 12:06:43,896 | INFO     | [job] queue monitor thread has finished
[2025-11-24 13:57:17] 2025-11-24 12:06:45,871 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 13:57:17] 2025-11-24 12:07:03,058 | INFO     | [monitor] cgroup control has ended
[2025-11-24 13:57:17] 2025-11-24 12:07:03,356 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140155319461696)>', '<ExcThread(monitor, started 140154807232256)>']
[2025-11-24 13:57:17] 2025-11-24 12:07:08,382 | INFO     | all workflow threads have been joined
[2025-11-24 13:57:17] 2025-11-24 12:07:08,382 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 13:57:17] 2025-11-24 12:07:08,383 | INFO     | traces error code: 0
[2025-11-24 13:57:17] 2025-11-24 12:07:08,383 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 13:57:17] 2025-11-24 12:07:11,551 | INFO     | PID=4148271 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 13:57:17] 2025-11-24 12:07:11,552 | INFO     | .. there are 10 such processes running
[2025-11-24 13:57:17] 2025-11-24 12:07:11,552 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 13:57:17] 2025-11-24 12:07:11,552 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 13:57:17] 2025-11-24 12:07:11,552 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 13:57:17] 2025-11-24 12:07:11,552 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 13:57:17] 2025-11-24 12:07:11,553 | INFO     | [monitor] control thread has ended
[2025-11-24 13:57:17] 2025-11-24 12:07:12,179 [wrapper] ==== pilot stdout END ====
[2025-11-24 13:57:17] 2025-11-24 12:07:12,227 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 13:57:17] 2025-11-24 12:07:12,338 [wrapper] pilotpid: 4148271
[2025-11-24 13:57:17] 2025-11-24 12:07:12,519 [wrapper] Pilot exit status: 0
[2025-11-24 13:57:17] 2025-11-24 12:07:12,737 [wrapper] pandaids: 6895337470
[2025-11-24 13:57:17] 2025-11-24 12:07:13,087 [wrapper] cleanup supervisor_pilot 2311315 4148272
[2025-11-24 13:57:17] 2025-11-24 12:07:13,091 [wrapper] Test setup, not cleaning
[2025-11-24 13:57:17] 2025-11-24 12:07:13,096 [wrapper] apfmon messages muted
[2025-11-24 13:57:17] 2025-11-24 12:07:13,101 [wrapper] ==== wrapper stdout END ====
[2025-11-24 13:57:17] 2025-11-24 12:07:13,104 [wrapper] ==== wrapper stderr END ====
[2025-11-24 13:57:17]  *** Error codes and diagnostics ***
[2025-11-24 13:57:17]     "exeErrorCode": 0,
[2025-11-24 13:57:17]     "exeErrorDiag": "",
[2025-11-24 13:57:17]     "pilotErrorCode": 0,
[2025-11-24 13:57:17]     "pilotErrorDiag": "",
[2025-11-24 13:57:17]  *** Listing of results directory ***
[2025-11-24 13:57:17] total 1332408
[2025-11-24 13:57:17] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 02:52 pilot3.tar.gz
[2025-11-24 13:57:17] -rwx------. 1 boincer umatlas     36292 Nov 22 03:03 runpilot2-wrapper.sh
[2025-11-24 13:57:17] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 03:03 queuedata.json
[2025-11-24 13:57:17] -rw-r--r--. 1 boincer umatlas       100 Nov 23 00:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 13:57:17] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 00:36 run_atlas
[2025-11-24 13:57:17] -rw-r--r--. 1 boincer umatlas       105 Nov 23 00:36 job.xml
[2025-11-24 13:57:17] -rw-r--r--. 2 boincer umatlas 407699643 Nov 23 00:36 EVNT.47483658._000307.pool.root.1
[2025-11-24 13:57:17] -rw-r--r--. 2 boincer umatlas    590100 Nov 23 00:36 input.tar.gz
[2025-11-24 13:57:17] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:36 start_atlas.sh
[2025-11-24 13:57:17] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 00:36 shared
[2025-11-24 13:57:17] -rw-r--r--. 1 boincer umatlas         0 Nov 23 00:36 boinc_lockfile
[2025-11-24 13:57:17] -rw-r--r--. 1 boincer umatlas      2785 Nov 23 00:37 pandaJob.out
[2025-11-24 13:57:17] -rw-------. 1 boincer umatlas        57 Nov 23 00:37 setup.sh.local
[2025-11-24 13:57:17] -rw-------. 1 boincer umatlas    989784 Nov 23 00:38 agis_schedconf.cvmfs.json
[2025-11-24 13:57:17] drwx------. 5 boincer umatlas      4096 Nov 23 00:38 pilot3
[2025-11-24 13:57:17] -rw-r--r--. 1 boincer umatlas       533 Nov 24 04:59 boinc_task_state.xml
[2025-11-24 13:57:17] -rw-------. 1 boincer umatlas 920469182 Nov 24 06:54 HITS.47556137._003035.pool.root.1
[2025-11-24 13:57:17] -rw-------. 1 boincer umatlas      1070 Nov 24 07:04 memory_monitor_summary.json
[2025-11-24 13:57:17] -rw-------. 1 boincer umatlas   1516227 Nov 24 07:05 agis_ddmendpoints.agis.ALL.json
[2025-11-24 13:57:17] -rw-------. 1 boincer umatlas   2939626 Nov 24 07:05 log.47556137._003035.job.log.tgz.1
[2025-11-24 13:57:17] -rw-------. 1 boincer umatlas        95 Nov 24 07:06 pilot_heartbeat.json
[2025-11-24 13:57:17] -rw-------. 1 boincer umatlas      8667 Nov 24 07:06 heartbeat.json
[2025-11-24 13:57:17] -rw-------. 1 boincer umatlas       823 Nov 24 07:07 pilotlog.txt
[2025-11-24 13:57:17] -rw-------. 1 boincer umatlas  13209798 Nov 24 07:07 log.47556137._003035.job.log.1
[2025-11-24 13:57:17] -rw-------. 1 boincer umatlas       353 Nov 24 07:07 output.list
[2025-11-24 13:57:17] -rw-r--r--. 1 boincer umatlas       620 Nov 24 07:07 runtime_log
[2025-11-24 13:57:17] -rw-------. 1 boincer umatlas  16168960 Nov 24 07:07 result.tar.gz
[2025-11-24 13:57:17] -rw-r--r--. 1 boincer umatlas      9346 Nov 24 07:07 runtime_log.err
[2025-11-24 13:57:17] -rw-------. 1 boincer umatlas       669 Nov 24 07:07 DhZKDmclxg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmK1HKDmKV4O1m.diag
[2025-11-24 13:57:17] -rw-r--r--. 1 boincer umatlas      6616 Nov 24 13:57 init_data.xml
[2025-11-24 13:57:17] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 13:57 boinc_mmap_file
[2025-11-24 13:57:17] -rw-r--r--. 1 boincer umatlas        29 Nov 24 13:57 wrapper_checkpoint.txt
[2025-11-24 13:57:17] -rw-r--r--. 1 boincer umatlas     21908 Nov 24 13:57 stderr.txt
[2025-11-24 13:57:17] HITS file was successfully produced:
[2025-11-24 13:57:17] -rw-------. 1 boincer umatlas 920469182 Nov 24 06:54 shared/HITS.pool.root.1
[2025-11-24 13:57:17]  *** Contents of shared directory: ***
[2025-11-24 13:57:17] total 1313440
[2025-11-24 13:57:17] -rw-r--r--. 2 boincer umatlas 407699643 Nov 23 00:36 ATLAS.root_0
[2025-11-24 13:57:17] -rw-r--r--. 2 boincer umatlas    590100 Nov 23 00:36 input.tar.gz
[2025-11-24 13:57:17] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:36 start_atlas.sh
[2025-11-24 13:57:17] -rw-------. 1 boincer umatlas 920469182 Nov 24 06:54 HITS.pool.root.1
[2025-11-24 13:57:17] -rw-------. 1 boincer umatlas  16168960 Nov 24 07:07 result.tar.gz
13:57:19 (4143388): run_atlas exited; CPU time 365192.677648
13:57:19 (4143388): called boinc_finish(0)

</stderr_txt>
]]>

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