Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:44:46 (783630): wrapper (7.7.26015): starting
21:44:46 (783630): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 21:44:46] Arguments: --nthreads 3
[2025-11-25 21:44:46] Threads: 3
[2025-11-25 21:44:46] Checking for CVMFS
[2025-11-25 21:44:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 21:44:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 21:44:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 21:44:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 21:44:46] 2.9.2.0 3581133 10403 99000 153297 0 81 27985389 36864001 0 130560 1 3861442 99.856 641216 1085 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 21:44:46] CVMFS is ok
[2025-11-25 21:44:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 21:44:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 21:44:46] Further information can be found at the LHC@home message board.
[2025-11-25 21:44:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 21:44:46] Checking for apptainer binary...
[2025-11-25 21:44:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 21:44:46] Running /usr/bin/apptainer --version
[2025-11-25 21:44:46] apptainer version 1.4.1-1.1
[2025-11-25 21:44:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 21:44:46] magicA250a
[2025-11-25 21:44:46] apptainer works
[2025-11-25 21:44:46] Set ATHENA_PROC_NUMBER=3
[2025-11-25 21:44:46] Set ATHENA_CORE_NUMBER=3
[2025-11-25 21:44:46] Starting ATLAS job with PandaID=6895337442
[2025-11-25 21:44:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 05:48:28]  *** The last 200 lines of the pilot log: ***
[2025-11-26 05:48:28] 2025-11-26 04:47:47,024 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 05:48:28] 2025-11-26 04:47:47,024 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 05:48:28] 2025-11-26 04:47:47,024 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 05:48:28] 2025-11-26 04:47:47,025 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 05:48:28] 2025-11-26 04:47:47,025 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 05:48:28] 2025-11-26 04:47:47,025 | INFO     | job 6895337442 has completed (purged errors)
[2025-11-26 05:48:28] 2025-11-26 04:47:47,025 | INFO     | overall cleanup function is called
[2025-11-26 05:48:28] 2025-11-26 04:47:48,033 | INFO     | --- collectZombieJob: --- 10, [793799]
[2025-11-26 05:48:28] 2025-11-26 04:47:48,034 | INFO     | zombie collector waiting for pid 793799
[2025-11-26 05:48:28] 2025-11-26 04:47:48,034 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 05:48:28] 2025-11-26 04:47:48,034 | INFO     | collected zombie processes
[2025-11-26 05:48:28] 2025-11-26 04:47:48,034 | INFO     | will attempt to kill all subprocesses of pid=793799
[2025-11-26 05:48:28] 2025-11-26 04:47:48,076 | INFO     | process IDs to be killed: [793799] (in reverse order)
[2025-11-26 05:48:28] 2025-11-26 04:47:48,100 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 05:48:28] 2025-11-26 04:47:48,100 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 05:48:28] 2025-11-26 04:47:48,101 | INFO     | did not find any defunct processes belonging to 793799
[2025-11-26 05:48:28] 2025-11-26 04:47:48,102 | INFO     | did not find any defunct processes belonging to 793799
[2025-11-26 05:48:28] 2025-11-26 04:47:48,103 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 05:48:28] 2025-11-26 04:47:48,103 | INFO     | ready for new job
[2025-11-26 05:48:28] 2025-11-26 04:47:48,103 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 05:48:28] 2025-11-26 04:47:48,104 | INFO     | ***************************************
[2025-11-26 05:48:28] 2025-11-26 04:47:48,104 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 05:48:28] 2025-11-26 04:47:48,104 | INFO     | ***************************************
[2025-11-26 05:48:28] 2025-11-26 04:47:48,104 | INFO     | 
[2025-11-26 05:48:28] 2025-11-26 04:47:48,105 | INFO     | architecture information:
[2025-11-26 05:48:28] 2025-11-26 04:47:48,105 | INFO     | executing command: cat /etc/os-release
[2025-11-26 05:48:28] 2025-11-26 04:47:48,113 | INFO     | cat /etc/os-release:
[2025-11-26 05:48:28] NAME="CentOS Linux"
[2025-11-26 05:48:28] VERSION="7 (Core)"
[2025-11-26 05:48:28] ID="centos"
[2025-11-26 05:48:28] ID_LIKE="rhel fedora"
[2025-11-26 05:48:28] VERSION_ID="7"
[2025-11-26 05:48:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 05:48:28] ANSI_COLOR="0;31"
[2025-11-26 05:48:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 05:48:28] HOME_URL="https://www.centos.org/"
[2025-11-26 05:48:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 05:48:28] 
[2025-11-26 05:48:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 05:48:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 05:48:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 05:48:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 05:48:28] 
[2025-11-26 05:48:28] 2025-11-26 04:47:48,113 | INFO     | ***************************************
[2025-11-26 05:48:28] 2025-11-26 04:47:48,616 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 05:48:28] 2025-11-26 04:47:48,628 | INFO     | sufficient remaining disk space (328709701632 B)
[2025-11-26 05:48:28] 2025-11-26 04:47:48,628 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 05:48:28] 2025-11-26 04:47:48,628 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 05:48:28] 2025-11-26 04:47:48,628 | INFO     | update_server=False
[2025-11-26 05:48:28] 2025-11-26 04:47:48,628 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 05:48:28] 2025-11-26 04:47:48,628 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:48:28] 2025-11-26 04:47:48,956 | INFO     | all payload control threads have been joined
[2025-11-26 05:48:28] 2025-11-26 04:47:49,021 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:48:28] 2025-11-26 04:47:49,021 | INFO     | aborting loop
[2025-11-26 05:48:28] 2025-11-26 04:47:49,630 | INFO     | [job] retrieve thread has finished
[2025-11-26 05:48:28] 2025-11-26 04:47:49,632 | INFO     | all data control threads have been joined
[2025-11-26 05:48:28] 2025-11-26 04:47:49,633 | INFO     | [job] queue monitor thread has finished
[2025-11-26 05:48:28] 2025-11-26 04:47:49,739 | INFO     | all job control threads have been joined
[2025-11-26 05:48:28] 2025-11-26 04:47:49,796 | INFO     | [job] validate thread has finished
[2025-11-26 05:48:28] 2025-11-26 04:47:49,797 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 05:48:28] 2025-11-26 04:47:49,844 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 05:48:28] 2025-11-26 04:47:49,962 | INFO     | [payload] control thread has finished
[2025-11-26 05:48:28] 2025-11-26 04:47:50,027 | INFO     | [job] job monitor thread has finished
[2025-11-26 05:48:28] 2025-11-26 04:47:50,070 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 05:48:28] 2025-11-26 04:47:50,081 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 05:48:28] 2025-11-26 04:47:50,358 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 05:48:28] 2025-11-26 04:47:50,574 | INFO     | [data] copytool_in thread has finished
[2025-11-26 05:48:28] 2025-11-26 04:47:50,638 | INFO     | [data] control thread has finished
[2025-11-26 05:48:28] 2025-11-26 04:47:50,744 | INFO     | [job] control thread has finished
[2025-11-26 05:48:28] 2025-11-26 04:47:50,803 | INFO     | [payload] validate_post thread has finished
[2025-11-26 05:48:28] 2025-11-26 04:47:50,976 | INFO     | [payload] failed_post thread has finished
[2025-11-26 05:48:28] 2025-11-26 04:47:51,091 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 05:48:28] 2025-11-26 04:47:52,087 | INFO     | [data] copytool_out thread has finished
[2025-11-26 05:48:28] 2025-11-26 04:47:55,098 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 05:48:28] 2025-11-26 04:48:18,751 | INFO     | PID=787349 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 05:48:28] 2025-11-26 04:48:18,751 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 05:48:28] 2025-11-26 04:48:18,751 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 05:48:28] 2025-11-26 04:48:18,751 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 05:48:28] 2025-11-26 04:48:22,781 | INFO     | [monitor] cgroup control has ended
[2025-11-26 05:48:28] 2025-11-26 04:48:22,914 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140663534044992)>', '<ExcThread(monitor, started 140662913619712)>']
[2025-11-26 05:48:28] 2025-11-26 04:48:23,778 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 05:48:28] 2025-11-26 04:48:23,778 | INFO     | [monitor] control thread has ended
[2025-11-26 05:48:28] 2025-11-26 04:48:27,940 | INFO     | all workflow threads have been joined
[2025-11-26 05:48:28] 2025-11-26 04:48:27,941 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 05:48:28] 2025-11-26 04:48:27,941 | INFO     | traces error code: 0
[2025-11-26 05:48:28] 2025-11-26 04:48:27,941 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 05:48:28] 2025-11-26 04:48:27,989 [wrapper] ==== pilot stdout END ====
[2025-11-26 05:48:28] 2025-11-26 04:48:27,991 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 05:48:28] 2025-11-26 04:48:27,993 [wrapper] pilotpid: 787349
[2025-11-26 05:48:28] 2025-11-26 04:48:27,995 [wrapper] Pilot exit status: 0
[2025-11-26 05:48:28] 2025-11-26 04:48:28,003 [wrapper] pandaids: 6895337442
[2025-11-26 05:48:28] 2025-11-26 04:48:28,018 [wrapper] cleanup supervisor_pilot  844673 787350
[2025-11-26 05:48:28] 2025-11-26 04:48:28,021 [wrapper] Test setup, not cleaning
[2025-11-26 05:48:28] 2025-11-26 04:48:28,023 [wrapper] apfmon messages muted
[2025-11-26 05:48:28] 2025-11-26 04:48:28,025 [wrapper] ==== wrapper stdout END ====
[2025-11-26 05:48:28] 2025-11-26 04:48:28,027 [wrapper] ==== wrapper stderr END ====
[2025-11-26 05:48:28]  *** Error codes and diagnostics ***
[2025-11-26 05:48:28]     "exeErrorCode": 0,
[2025-11-26 05:48:28]     "exeErrorDiag": "",
[2025-11-26 05:48:28]     "pilotErrorCode": 0,
[2025-11-26 05:48:28]     "pilotErrorDiag": "",
[2025-11-26 05:48:28]  *** Listing of results directory ***
[2025-11-26 05:48:28] total 1317156
[2025-11-26 05:48:28] -rw-r--r-- 1 boinc boinc      5112 Nov 22 08:52 queuedata.json
[2025-11-26 05:48:28] -rw-r--r-- 1 boinc boinc    576529 Nov 22 08:52 pilot3.tar.gz
[2025-11-26 05:48:28] -rwx------ 1 boinc boinc     36292 Nov 22 08:53 runpilot2-wrapper.sh
[2025-11-26 05:48:28] -rw-r--r-- 1 boinc boinc       100 Nov 25 21:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 05:48:28] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 21:44 run_atlas
[2025-11-26 05:48:28] -rw-r--r-- 1 boinc boinc       105 Nov 25 21:44 job.xml
[2025-11-26 05:48:28] -rw-r--r-- 2 boinc boinc 410103689 Nov 25 21:44 EVNT.47483658._000304.pool.root.1
[2025-11-26 05:48:28] -rw-r--r-- 2 boinc boinc    590101 Nov 25 21:44 input.tar.gz
[2025-11-26 05:48:28] -rw-r--r-- 2 boinc boinc     15847 Nov 25 21:44 start_atlas.sh
[2025-11-26 05:48:28] drwxrwx--x 2 boinc boinc      4096 Nov 25 21:44 shared
[2025-11-26 05:48:28] -rw-r--r-- 1 boinc boinc         0 Nov 25 21:44 boinc_setup_complete
[2025-11-26 05:48:28] -rw-r--r-- 1 boinc boinc      6443 Nov 25 21:44 init_data.xml
[2025-11-26 05:48:28] -rw-r--r-- 1 boinc boinc         0 Nov 25 21:44 boinc_lockfile
[2025-11-26 05:48:28] -rw-r--r-- 1 boinc boinc      2785 Nov 25 21:44 pandaJob.out
[2025-11-26 05:48:28] -rw------- 1 boinc boinc    991893 Nov 25 21:44 agis_schedconf.cvmfs.json
[2025-11-26 05:48:28] drwx------ 5 boinc boinc      4096 Nov 25 21:44 pilot3
[2025-11-26 05:48:28] -rw-r--r-- 1 boinc boinc       531 Nov 26 05:43 boinc_task_state.xml
[2025-11-26 05:48:28] -rw------- 1 boinc boinc 924274447 Nov 26 05:47 HITS.47556137._003007.pool.root.1
[2025-11-26 05:48:28] -rw------- 1 boinc boinc      1028 Nov 26 05:47 memory_monitor_summary.json
[2025-11-26 05:48:28] -rw------- 1 boinc boinc   1516240 Nov 26 05:47 agis_ddmendpoints.agis.ALL.json
[2025-11-26 05:48:28] -rw------- 1 boinc boinc   1174124 Nov 26 05:47 log.47556137._003007.job.log.tgz.1
[2025-11-26 05:48:28] -rw------- 1 boinc boinc      8577 Nov 26 05:47 heartbeat.json
[2025-11-26 05:48:28] -rw-r--r-- 1 boinc boinc      8192 Nov 26 05:48 boinc_mmap_file
[2025-11-26 05:48:28] -rw-r--r-- 1 boinc boinc        28 Nov 26 05:48 wrapper_checkpoint.txt
[2025-11-26 05:48:28] -rw------- 1 boinc boinc        95 Nov 26 05:48 pilot_heartbeat.json
[2025-11-26 05:48:28] -rw------- 1 boinc boinc      4751 Nov 26 05:48 pilotlog.txt
[2025-11-26 05:48:28] -rw------- 1 boinc boinc   4071124 Nov 26 05:48 log.47556137._003007.job.log.1
[2025-11-26 05:48:28] -rw------- 1 boinc boinc       353 Nov 26 05:48 output.list
[2025-11-26 05:48:28] -rw-r--r-- 1 boinc boinc       620 Nov 26 05:48 runtime_log
[2025-11-26 05:48:28] -rw------- 1 boinc boinc   5263360 Nov 26 05:48 result.tar.gz
[2025-11-26 05:48:28] -rw------- 1 boinc boinc       669 Nov 26 05:48 w6aNDmScxg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmY2JKDmVByUkm.diag
[2025-11-26 05:48:28] -rw-r--r-- 1 boinc boinc      8918 Nov 26 05:48 runtime_log.err
[2025-11-26 05:48:28] -rw-r--r-- 1 boinc boinc     11534 Nov 26 05:48 stderr.txt
[2025-11-26 05:48:28] HITS file was successfully produced:
[2025-11-26 05:48:28] -rw------- 1 boinc boinc 924274447 Nov 26 05:47 shared/HITS.pool.root.1
[2025-11-26 05:48:28]  *** Contents of shared directory: ***
[2025-11-26 05:48:28] total 1308848
[2025-11-26 05:48:28] -rw-r--r-- 2 boinc boinc 410103689 Nov 25 21:44 ATLAS.root_0
[2025-11-26 05:48:28] -rw-r--r-- 2 boinc boinc    590101 Nov 25 21:44 input.tar.gz
[2025-11-26 05:48:28] -rw-r--r-- 2 boinc boinc     15847 Nov 25 21:44 start_atlas.sh
[2025-11-26 05:48:28] -rw------- 1 boinc boinc 924274447 Nov 26 05:47 HITS.pool.root.1
[2025-11-26 05:48:28] -rw------- 1 boinc boinc   5263360 Nov 26 05:48 result.tar.gz
05:48:29 (783630): run_atlas exited; CPU time 85500.291002
05:48:29 (783630): called boinc_finish(0)

</stderr_txt>
]]>

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