Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:11:31 (21213): wrapper (7.7.26015): starting
00:11:31 (21213): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:11:31] Arguments: --nthreads 8
[2025-11-26 00:11:31] Threads: 8
[2025-11-26 00:11:31] Checking for CVMFS
[2025-11-26 00:11:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:11:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:11:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:11:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:11:33] 2.11.2.0 1387 284507 141080 153301 3 75 24266916 25165824 4632 130560 11 142314471 99.882 82436929 3311 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-26 00:11:33] CVMFS is ok
[2025-11-26 00:11:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:11:33] Checking for apptainer binary...
[2025-11-26 00:11:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:11:33] Running /usr/bin/apptainer --version
[2025-11-26 00:11:34] apptainer version 1.3.2-1.el7
[2025-11-26 00:11:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:12:08] cg-vwn231.simple-grid.lan
[2025-11-26 00:12:08] apptainer works
[2025-11-26 00:12:08] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:12:08] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:12:08] Starting ATLAS job with PandaID=6893876388
[2025-11-26 00:12:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 01:19:08]  *** The last 200 lines of the pilot log: ***
[2025-11-27 01:19:08] 2025-11-27 00:18:22,337 | INFO     | PID=25000 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 01:19:08] 2025-11-27 00:18:22,337 | INFO     | .. there are 9 such processes running
[2025-11-27 01:19:08] 2025-11-27 00:18:23,337 | INFO     | time since job start (90129s) is within the limit (172800.0s)
[2025-11-27 01:19:08] 2025-11-27 00:18:24,171 | INFO     | monitor loop #6051: job 0:6893876388 is in state 'finished'
[2025-11-27 01:19:08] 2025-11-27 00:18:24,172 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:19:08] 2025-11-27 00:18:25,344 | INFO     | time since job start (90131s) is within the limit (172800.0s)
[2025-11-27 01:19:08] 2025-11-27 00:18:26,676 | INFO     | monitor loop #6052: job 0:6893876388 is in state 'finished'
[2025-11-27 01:19:08] 2025-11-27 00:18:26,677 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:19:08] 2025-11-27 00:18:27,353 | INFO     | time since job start (90133s) is within the limit (172800.0s)
[2025-11-27 01:19:08] 2025-11-27 00:18:29,185 | INFO     | monitor loop #6053: job 0:6893876388 is in state 'finished'
[2025-11-27 01:19:08] 2025-11-27 00:18:29,186 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 01:19:08] 2025-11-27 00:18:29,359 | INFO     | time since job start (90135s) is within the limit (172800.0s)
[2025-11-27 01:19:08] 2025-11-27 00:18:29,360 | INFO     | 90145s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-27 01:19:08] 2025-11-27 00:18:30,169 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 01:19:08] 2025-11-27 00:18:30,170 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-27 01:19:08] 2025-11-27 00:18:30,172 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6893876388/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 01:19:08] 2025-11-27 00:18:30,173 | INFO     | extracted standard info from prmon json
[2025-11-27 01:19:08] 2025-11-27 00:18:30,173 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 01:19:08] 2025-11-27 00:18:30,173 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 01:19:08] 2025-11-27 00:18:30,233 | INFO     | fitting pss+swap vs Time
[2025-11-27 01:19:08] 2025-11-27 00:18:30,235 | INFO     | sum of square deviations: 980968773918.7697
[2025-11-27 01:19:08] 2025-11-27 00:18:30,321 | INFO     | sum of deviations: 3109624696552.4995
[2025-11-27 01:19:08] 2025-11-27 00:18:30,322 | INFO     | mean x: 1764157819.5912807
[2025-11-27 01:19:08] 2025-11-27 00:18:30,322 | INFO     | mean y: 2845895.007493188
[2025-11-27 01:19:08] 2025-11-27 00:18:30,322 | INFO     | intersect: -5589451097.793136
[2025-11-27 01:19:08] 2025-11-27 00:18:30,324 | INFO     | chi2: 23.016768979829447
[2025-11-27 01:19:08] 2025-11-27 00:18:30,326 | INFO     | sum of square deviations: 970979810107.7937
[2025-11-27 01:19:08] 2025-11-27 00:18:30,395 | INFO     | sum of deviations: 3593685773574.857
[2025-11-27 01:19:08] 2025-11-27 00:18:30,395 | INFO     | mean x: 1764157667.0950103
[2025-11-27 01:19:08] 2025-11-27 00:18:30,396 | INFO     | mean y: 2853284.1305536567
[2025-11-27 01:19:08] 2025-11-27 00:18:30,396 | INFO     | intersect: -6526456846.302054
[2025-11-27 01:19:08] 2025-11-27 00:18:30,398 | INFO     | chi2: 19.85331812374869
[2025-11-27 01:19:08] 2025-11-27 00:18:30,398 | INFO     | current chi2=19.85331812374869 (change=13.744113515033415 %)
[2025-11-27 01:19:08] 2025-11-27 00:18:30,398 | INFO     | right removable region: 1462
[2025-11-27 01:19:08] 2025-11-27 00:18:30,400 | INFO     | sum of square deviations: 970978832887.794
[2025-11-27 01:19:08] 2025-11-27 00:18:30,475 | INFO     | sum of deviations: 2474103453211.8555
[2025-11-27 01:19:08] 2025-11-27 00:18:30,476 | INFO     | mean x: 1764157972.0950103
[2025-11-27 01:19:08] 2025-11-27 00:18:30,476 | INFO     | mean y: 2855596.7060833904
[2025-11-27 01:19:08] 2025-11-27 00:18:30,476 | INFO     | intersect: -4492308646.7722025
[2025-11-27 01:19:08] 2025-11-27 00:18:30,478 | INFO     | chi2: 18.013055054053954
[2025-11-27 01:19:08] 2025-11-27 00:18:30,478 | INFO     | current chi2=18.013055054053954 (change=21.739428023804976 %)
[2025-11-27 01:19:08] 2025-11-27 00:18:30,478 | INFO     | left removable region: 10
[2025-11-27 01:19:08] 2025-11-27 00:18:30,480 | INFO     | sum of square deviations: 949241336047.5056
[2025-11-27 01:19:08] 2025-11-27 00:18:30,548 | INFO     | sum of deviations: 2489201645333.957
[2025-11-27 01:19:08] 2025-11-27 00:18:30,549 | INFO     | mean x: 1764157941.6033058
[2025-11-27 01:19:08] 2025-11-27 00:18:30,549 | INFO     | mean y: 2873572.4669421487
[2025-11-27 01:19:08] 2025-11-27 00:18:30,549 | INFO     | intersect: -4623289115.678096
[2025-11-27 01:19:08] 2025-11-27 00:18:30,551 | INFO     | chi2: 10.068815586884554
[2025-11-27 01:19:08] 2025-11-27 00:18:30,551 | INFO     | current memory leak: 2.62 B/s (using 1452 data points, chi2=10.07)
[2025-11-27 01:19:08] 2025-11-27 00:18:30,552 | INFO     | could have reported an average CPU frequency of 1999 MHz (49 samples)
[2025-11-27 01:19:08] 2025-11-27 00:18:30,553 | INFO     | ..............................
[2025-11-27 01:19:08] 2025-11-27 00:18:30,553 | INFO     | . Timing measurements:
[2025-11-27 01:19:08] 2025-11-27 00:18:30,553 | INFO     | . get job = 0 s
[2025-11-27 01:19:08] 2025-11-27 00:18:30,553 | INFO     | . initial setup = 9 s
[2025-11-27 01:19:08] 2025-11-27 00:18:30,553 | INFO     | . payload setup = 156 s
[2025-11-27 01:19:08] 2025-11-27 00:18:30,553 | INFO     | . stage-in = 0 s
[2025-11-27 01:19:08] 2025-11-27 00:18:30,553 | INFO     | . payload execution = 89695 s
[2025-11-27 01:19:08] 2025-11-27 00:18:30,554 | INFO     | . stage-out = 3 s
[2025-11-27 01:19:08] 2025-11-27 00:18:30,554 | INFO     | . log creation = 1 s
[2025-11-27 01:19:08] 2025-11-27 00:18:30,554 | INFO     | ..............................
[2025-11-27 01:19:08] 2025-11-27 00:18:30,952 | INFO     | 
[2025-11-27 01:19:08] 2025-11-27 00:18:30,953 | INFO     | job summary report
[2025-11-27 01:19:08] 2025-11-27 00:18:30,953 | INFO     | --------------------------------------------------
[2025-11-27 01:19:08] 2025-11-27 00:18:30,953 | INFO     | PanDA job id: 6893876388
[2025-11-27 01:19:08] 2025-11-27 00:18:30,953 | INFO     | task id: 47523449
[2025-11-27 01:19:08] 2025-11-27 00:18:30,953 | INFO     | errors: (none)
[2025-11-27 01:19:08] 2025-11-27 00:18:30,953 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 01:19:08] 2025-11-27 00:18:30,953 | INFO     | pilot state: finished 
[2025-11-27 01:19:08] 2025-11-27 00:18:30,953 | INFO     | transexitcode: 0
[2025-11-27 01:19:08] 2025-11-27 00:18:30,953 | INFO     | exeerrorcode: 0
[2025-11-27 01:19:08] 2025-11-27 00:18:30,953 | INFO     | exeerrordiag: 
[2025-11-27 01:19:08] 2025-11-27 00:18:30,953 | INFO     | exitcode: 0
[2025-11-27 01:19:08] 2025-11-27 00:18:30,954 | INFO     | exitmsg: OK
[2025-11-27 01:19:08] 2025-11-27 00:18:30,954 | INFO     | cpuconsumptiontime: 338232 s
[2025-11-27 01:19:08] 2025-11-27 00:18:30,954 | INFO     | nevents: 1000
[2025-11-27 01:19:08] 2025-11-27 00:18:30,954 | INFO     | neventsw: 0
[2025-11-27 01:19:08] 2025-11-27 00:18:30,954 | INFO     | pid: 31472
[2025-11-27 01:19:08] 2025-11-27 00:18:30,954 | INFO     | pgrp: 31472
[2025-11-27 01:19:08] 2025-11-27 00:18:30,954 | INFO     | corecount: 8
[2025-11-27 01:19:08] 2025-11-27 00:18:30,954 | INFO     | event service: False
[2025-11-27 01:19:08] 2025-11-27 00:18:30,954 | INFO     | sizes: {0: 2284038, 1: 2284122, 2: 2284321, 12: 2284321, 23: 2284349, 34: 2284377, 45: 2284533, 56: 2284561, 66: 2284589, 77: 2284617, 88: 2284673, 97: 2285243, 99
[2025-11-27 01:19:08] 2025-11-27 00:18:30,954 | INFO     | --------------------------------------------------
[2025-11-27 01:19:08] 2025-11-27 00:18:30,954 | INFO     | 
[2025-11-27 01:19:08] 2025-11-27 00:18:30,955 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-11-27 01:19:08] 2025-11-27 00:18:31,381 | INFO     | time since job start (90137s) is within the limit (172800.0s)
[2025-11-27 01:19:08] 2025-11-27 00:18:31,403 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 01:19:08] 2025-11-27 00:18:31,403 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 01:19:08] 2025-11-27 00:18:31,403 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 01:19:08] 2025-11-27 00:18:31,403 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 01:19:08] 2025-11-27 00:18:31,403 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 01:19:08] 2025-11-27 00:18:31,403 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 01:19:08] 2025-11-27 00:18:31,404 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 01:19:08] 2025-11-27 00:18:31,404 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 01:19:08] 2025-11-27 00:18:31,404 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 01:19:08] 2025-11-27 00:18:31,404 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 01:19:08] 2025-11-27 00:18:31,404 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 01:19:08] 2025-11-27 00:18:31,404 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 01:19:08] 2025-11-27 00:18:31,404 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 01:19:08] 2025-11-27 00:18:31,404 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 01:19:08] 2025-11-27 00:18:31,404 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 01:19:08] 2025-11-27 00:18:31,404 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 01:19:08] 2025-11-27 00:18:31,404 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 01:19:08] 2025-11-27 00:18:31,404 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 01:19:08] 2025-11-27 00:18:31,405 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 01:19:08] 2025-11-27 00:18:31,405 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 01:19:08] 2025-11-27 00:18:31,405 | INFO     | job 6893876388 has completed (purged errors)
[2025-11-27 01:19:08] 2025-11-27 00:18:31,405 | INFO     | overall cleanup function is called
[2025-11-27 01:19:08] 2025-11-27 00:18:32,422 | INFO     | --- collectZombieJob: --- 10, [31472]
[2025-11-27 01:19:08] 2025-11-27 00:18:32,423 | INFO     | zombie collector waiting for pid 31472
[2025-11-27 01:19:08] 2025-11-27 00:18:32,423 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 01:19:08] 2025-11-27 00:18:32,423 | INFO     | collected zombie processes
[2025-11-27 01:19:08] 2025-11-27 00:18:32,423 | INFO     | will attempt to kill all subprocesses of pid=31472
[2025-11-27 01:19:08] 2025-11-27 00:18:32,539 | INFO     | process IDs to be killed: [31472] (in reverse order)
[2025-11-27 01:19:08] 2025-11-27 00:18:33,216 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 01:19:08] 2025-11-27 00:18:33,216 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 01:19:08] 2025-11-27 00:18:33,220 | INFO     | did not find any defunct processes belonging to 31472
[2025-11-27 01:19:08] 2025-11-27 00:18:33,222 | INFO     | did not find any defunct processes belonging to 31472
[2025-11-27 01:19:08] 2025-11-27 00:18:33,240 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 01:19:08] 2025-11-27 00:18:33,240 | INFO     | ready for new job
[2025-11-27 01:19:08] 2025-11-27 00:18:33,240 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 01:19:08] 2025-11-27 00:18:33,245 | INFO     | ***************************************
[2025-11-27 01:19:08] 2025-11-27 00:18:33,245 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 01:19:08] 2025-11-27 00:18:33,246 | INFO     | ***************************************
[2025-11-27 01:19:08] 2025-11-27 00:18:33,246 | INFO     | 
[2025-11-27 01:19:08] 2025-11-27 00:18:33,246 | INFO     | pilot is running in a VM
[2025-11-27 01:19:08] 2025-11-27 00:18:33,246 | INFO     | architecture information:
[2025-11-27 01:19:08] 2025-11-27 00:18:33,254 | INFO     | executing command: cat /etc/os-release
[2025-11-27 01:19:08] 2025-11-27 00:18:33,439 | INFO     | cat /etc/os-release:
[2025-11-27 01:19:08] NAME="CentOS Linux"
[2025-11-27 01:19:08] VERSION="7 (Core)"
[2025-11-27 01:19:08] ID="centos"
[2025-11-27 01:19:08] ID_LIKE="rhel fedora"
[2025-11-27 01:19:08] VERSION_ID="7"
[2025-11-27 01:19:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 01:19:08] ANSI_COLOR="0;31"
[2025-11-27 01:19:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 01:19:08] HOME_URL="https://www.centos.org/"
[2025-11-27 01:19:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 01:19:08] 
[2025-11-27 01:19:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 01:19:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 01:19:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 01:19:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 01:19:08] 
[2025-11-27 01:19:08] 2025-11-27 00:18:33,439 | INFO     | ***************************************
[2025-11-27 01:19:08] 2025-11-27 00:18:33,944 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-11-27 01:19:08] 2025-11-27 00:18:34,177 | INFO     | sufficient remaining disk space (494934163456 B)
[2025-11-27 01:19:08] 2025-11-27 00:18:34,177 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 01:19:08] 2025-11-27 00:18:34,177 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 01:19:08] 2025-11-27 00:18:34,177 | INFO     | update_server=False
[2025-11-27 01:19:08] 2025-11-27 00:18:34,178 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 01:19:08] 2025-11-27 00:18:34,209 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 01:19:08] 2025-11-27 00:18:34,210 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 01:19:08] 2025-11-27 00:18:34,210 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:19:08] 2025-11-27 00:18:34,210 | INFO     | will abort loop
[2025-11-27 01:19:08] 2025-11-27 00:18:35,184 | INFO     | [job] retrieve thread has finished
[2025-11-27 01:19:08] 2025-11-27 00:18:35,215 | INFO     | [job] job monitor thread has finished
[2025-11-27 01:19:08] 2025-11-27 00:18:35,236 | INFO     | all data control threads have been joined
[2025-11-27 01:19:08] 2025-11-27 00:18:35,265 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 01:19:08] 2025-11-27 00:18:35,315 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 01:19:08] 2025-11-27 00:18:35,542 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 01:19:08] 2025-11-27 00:18:35,579 | INFO     | all payload control threads have been joined
[2025-11-27 01:19:08] 2025-11-27 00:18:35,644 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 01:19:08] 2025-11-27 00:18:35,686 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:19:08] 2025-11-27 00:18:35,716 | INFO     | [job] validate thread has finished
[2025-11-27 01:19:08] 2025-11-27 00:18:35,749 | INFO     | all job control threads have been joined
[2025-11-27 01:19:08] 2025-11-27 00:18:35,808 | INFO     | [data] copytool_in thread has finished
[2025-11-27 01:19:08] 2025-11-27 00:18:35,864 | INFO     | [payload] validate_post thread has finished
[2025-11-27 01:19:08] 2025-11-27 00:18:35,955 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 01:19:08] 2025-11-27 00:18:36,242 | INFO     | [data] control thread has finished
[2025-11-27 01:19:08] 2025-11-27 00:18:36,543 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 01:19:08] 2025-11-27 00:18:36,585 | INFO     | [payload] control thread has finished
[2025-11-27 01:19:08] 2025-11-27 00:18:36,631 | INFO     | [payload] failed_post thread has finished
[2025-11-27 01:19:08] 2025-11-27 00:18:36,692 | INFO     | [job] queue monitor thread has finished
[2025-11-27 01:19:08] 2025-11-27 00:18:36,755 | INFO     | [job] control thread has finished
[2025-11-27 01:19:08] 2025-11-27 00:18:37,272 | INFO     | [data] copytool_out thread has finished
[2025-11-27 01:19:08] 2025-11-27 00:18:39,324 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 01:19:08] 2025-11-27 00:18:51,217 | INFO     | [monitor] cgroup control has ended
[2025-11-27 01:19:08] 2025-11-27 00:18:52,849 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140113510418240)>', '<ExcThread(monitor, started 140113057126144)>']
[2025-11-27 01:19:08] 2025-11-27 00:18:57,875 | INFO     | all workflow threads have been joined
[2025-11-27 01:19:08] 2025-11-27 00:18:57,876 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 01:19:08] 2025-11-27 00:18:57,876 | INFO     | traces error code: 0
[2025-11-27 01:19:08] 2025-11-27 00:18:57,876 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 01:19:08] 2025-11-27 00:19:04,552 | INFO     | PID=25000 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-27 01:19:08] 2025-11-27 00:19:04,553 | INFO     | .. there are 9 such processes running
[2025-11-27 01:19:08] 2025-11-27 00:19:04,553 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 01:19:08] 2025-11-27 00:19:04,553 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 01:19:08] 2025-11-27 00:19:04,553 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 01:19:08] 2025-11-27 00:19:04,553 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 01:19:08] 2025-11-27 00:19:04,553 | INFO     | [monitor] control thread has ended
[2025-11-27 01:19:08] 2025-11-27 00:19:04,823 [wrapper] ==== pilot stdout END ====
[2025-11-27 01:19:08] 2025-11-27 00:19:04,918 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 01:19:08] 2025-11-27 00:19:04,988 [wrapper] pilotpid: 25000
[2025-11-27 01:19:08] 2025-11-27 00:19:05,040 [wrapper] Pilot exit status: 0
[2025-11-27 01:19:08] 2025-11-27 00:19:05,289 [wrapper] pandaids: 6893876388
[2025-11-27 01:19:08] 2025-11-27 00:19:05,765 [wrapper] cleanup supervisor_pilot  8970 25001
[2025-11-27 01:19:08] 2025-11-27 00:19:05,785 [wrapper] Test setup, not cleaning
[2025-11-27 01:19:08] 2025-11-27 00:19:05,831 [wrapper] apfmon messages muted
[2025-11-27 01:19:08] 2025-11-27 00:19:05,886 [wrapper] ==== wrapper stdout END ====
[2025-11-27 01:19:08] 2025-11-27 00:19:05,959 [wrapper] ==== wrapper stderr END ====
[2025-11-27 01:19:08]  *** Error codes and diagnostics ***
[2025-11-27 01:19:08]     "exeErrorCode": 0,
[2025-11-27 01:19:08]     "exeErrorDiag": "",
[2025-11-27 01:19:08]     "pilotErrorCode": 0,
[2025-11-27 01:19:08]     "pilotErrorDiag": "",
[2025-11-27 01:19:08]  *** Listing of results directory ***
[2025-11-27 01:19:08] total 1353508
[2025-11-27 01:19:08] -rw-r--r--. 1 boinc boinc    576529 Nov 20 17:47 pilot3.tar.gz
[2025-11-27 01:19:08] -rw-r--r--. 1 boinc boinc      5112 Nov 20 17:53 queuedata.json
[2025-11-27 01:19:08] -rwx------. 1 boinc boinc     36292 Nov 20 17:53 runpilot2-wrapper.sh
[2025-11-27 01:19:08] -rw-r--r--. 1 boinc boinc       100 Nov 26 00:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 01:19:08] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 00:11 run_atlas
[2025-11-27 01:19:08] -rw-r--r--. 1 boinc boinc       105 Nov 26 00:11 job.xml
[2025-11-27 01:19:08] -rw-r--r--. 2 boinc boinc 413367970 Nov 26 00:11 EVNT.47493127._000752.pool.root.1
[2025-11-27 01:19:08] -rw-r--r--. 1 boinc boinc      6393 Nov 26 00:11 init_data.xml
[2025-11-27 01:19:08] -rw-r--r--. 2 boinc boinc     15847 Nov 26 00:11 start_atlas.sh
[2025-11-27 01:19:08] drwxrwx--x. 2 boinc boinc        68 Nov 26 00:11 shared
[2025-11-27 01:19:08] -rw-r--r--. 2 boinc boinc    590098 Nov 26 00:11 input.tar.gz
[2025-11-27 01:19:08] -rw-r--r--. 1 boinc boinc         0 Nov 26 00:11 boinc_lockfile
[2025-11-27 01:19:08] -rw-r--r--. 1 boinc boinc      2785 Nov 26 00:12 pandaJob.out
[2025-11-27 01:19:08] -rw-------. 1 boinc boinc    991877 Nov 26 00:16 agis_schedconf.cvmfs.json
[2025-11-27 01:19:08] drwx------. 5 boinc boinc      4096 Nov 26 00:16 pilot3
[2025-11-27 01:19:08] -rw-r--r--. 1 boinc boinc       533 Nov 27 00:51 boinc_task_state.xml
[2025-11-27 01:19:08] -rw-------. 1 boinc boinc 939657342 Nov 27 01:15 HITS.47523449._007515.pool.root.1
[2025-11-27 01:19:08] -rw-------. 1 boinc boinc      1030 Nov 27 01:16 memory_monitor_summary.json
[2025-11-27 01:19:08] -rw-------. 1 boinc boinc   1516240 Nov 27 01:16 agis_ddmendpoints.agis.ALL.json
[2025-11-27 01:19:08] -rw-------. 1 boinc boinc   2532026 Nov 27 01:16 log.47523449._007515.job.log.tgz.1
[2025-11-27 01:19:08] -rw-------. 1 boinc boinc        95 Nov 27 01:18 pilot_heartbeat.json
[2025-11-27 01:19:08] -rw-------. 1 boinc boinc      7948 Nov 27 01:18 heartbeat.json
[2025-11-27 01:19:08] -rw-r--r--. 1 boinc boinc      8192 Nov 27 01:18 boinc_mmap_file
[2025-11-27 01:19:08] -rw-r--r--. 1 boinc boinc        29 Nov 27 01:18 wrapper_checkpoint.txt
[2025-11-27 01:19:08] -rw-------. 1 boinc boinc       820 Nov 27 01:19 pilotlog.txt
[2025-11-27 01:19:08] -rw-------. 1 boinc boinc  12004802 Nov 27 01:19 log.47523449._007515.job.log.1
[2025-11-27 01:19:08] -rw-------. 1 boinc boinc       353 Nov 27 01:19 output.list
[2025-11-27 01:19:08] -rw-r--r--. 1 boinc boinc       620 Nov 27 01:19 runtime_log
[2025-11-27 01:19:08] -rw-------. 1 boinc boinc  14551040 Nov 27 01:19 result.tar.gz
[2025-11-27 01:19:08] -rw-r--r--. 1 boinc boinc      8833 Nov 27 01:19 runtime_log.err
[2025-11-27 01:19:08] -rw-------. 1 boinc boinc       662 Nov 27 01:19 RlGMDms5Mg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7KIKDmiW9ANn.diag
[2025-11-27 01:19:08] -rw-r--r--. 1 boinc boinc     21439 Nov 27 01:19 stderr.txt
[2025-11-27 01:19:08] HITS file was successfully produced:
[2025-11-27 01:19:08] -rw-------. 1 boinc boinc 939657342 Nov 27 01:15 shared/HITS.pool.root.1
[2025-11-27 01:19:08]  *** Contents of shared directory: ***
[2025-11-27 01:19:08] total 1336124
[2025-11-27 01:19:08] -rw-r--r--. 2 boinc boinc 413367970 Nov 26 00:11 ATLAS.root_0
[2025-11-27 01:19:08] -rw-r--r--. 2 boinc boinc     15847 Nov 26 00:11 start_atlas.sh
[2025-11-27 01:19:08] -rw-r--r--. 2 boinc boinc    590098 Nov 26 00:11 input.tar.gz
[2025-11-27 01:19:08] -rw-------. 1 boinc boinc 939657342 Nov 27 01:15 HITS.pool.root.1
[2025-11-27 01:19:08] -rw-------. 1 boinc boinc  14551040 Nov 27 01:19 result.tar.gz
01:19:09 (21213): run_atlas exited; CPU time 338868.942976
01:19:09 (21213): called boinc_finish(0)

</stderr_txt>
]]>

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