Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:23 (1778161): wrapper (7.7.26015): starting
00:04:23 (1778161): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 00:04:23] Arguments: --nthreads 12
[2025-11-24 00:04:23] Threads: 12
[2025-11-24 00:04:23] Checking for CVMFS
[2025-11-24 00:04:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:04:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:04:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:04:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:04:27] 2.13.2.0 6633 30402 180064 153233 3 368 34910384 40960001 13403 16776704 0 22947724 99.677 17693781 32380 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 00:04:27] CVMFS is ok
[2025-11-24 00:04:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:04:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:04:27] Further information can be found at the LHC@home message board.
[2025-11-24 00:04:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:04:27] Checking for apptainer binary...
[2025-11-24 00:04:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:04:27] Running /usr/bin/apptainer --version
[2025-11-24 00:04:30] apptainer version 1.4.4-1.el9
[2025-11-24 00:04:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:04:35] c-211-10.aglt2.org
[2025-11-24 00:04:35] apptainer works
[2025-11-24 00:04:35] Set ATHENA_PROC_NUMBER=12
[2025-11-24 00:04:35] Set ATHENA_CORE_NUMBER=12
[2025-11-24 00:04:35] Starting ATLAS job with PandaID=6895348420
[2025-11-24 00:04:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 12:24:27]  *** The last 200 lines of the pilot log: ***
[2025-11-25 12:24:27] 2025-11-25 17:23:30,345 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:24:27] 2025-11-25 17:23:30,779 | INFO     | time since job start (130600s) is within the limit (172800.0s)
[2025-11-25 12:24:27] 2025-11-25 17:23:32,796 | INFO     | time since job start (130602s) is within the limit (172800.0s)
[2025-11-25 12:24:27] 2025-11-25 17:23:32,851 | INFO     | monitor loop #6710: job 0:6895348420 is in state 'finished'
[2025-11-25 12:24:27] 2025-11-25 17:23:32,851 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:24:27] 2025-11-25 17:23:34,803 | INFO     | time since job start (130604s) is within the limit (172800.0s)
[2025-11-25 12:24:27] 2025-11-25 17:23:35,356 | INFO     | monitor loop #6711: job 0:6895348420 is in state 'finished'
[2025-11-25 12:24:27] 2025-11-25 17:23:35,356 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:24:27] 2025-11-25 17:23:36,810 | INFO     | time since job start (130606s) is within the limit (172800.0s)
[2025-11-25 12:24:27] 2025-11-25 17:23:37,868 | INFO     | monitor loop #6712: job 0:6895348420 is in state 'finished'
[2025-11-25 12:24:27] 2025-11-25 17:23:37,891 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:24:27] 2025-11-25 17:23:38,817 | INFO     | time since job start (130608s) is within the limit (172800.0s)
[2025-11-25 12:24:27] 2025-11-25 17:23:40,396 | INFO     | monitor loop #6713: job 0:6895348420 is in state 'finished'
[2025-11-25 12:24:27] 2025-11-25 17:23:40,396 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:24:27] 2025-11-25 17:23:40,780 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 12:24:27] 2025-11-25 17:23:40,806 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2489.6119583333334
[2025-11-25 12:24:27] 2025-11-25 17:23:40,826 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895348420/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 12:24:27] 2025-11-25 17:23:40,827 | INFO     | extracted standard info from prmon json
[2025-11-25 12:24:27] 2025-11-25 17:23:40,828 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 12:24:27] 2025-11-25 17:23:40,828 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 12:24:27] 2025-11-25 17:23:40,903 | INFO     | fitting pss+swap vs Time
[2025-11-25 12:24:27] 2025-11-25 17:23:40,926 | INFO     | time since job start (130610s) is within the limit (172800.0s)
[2025-11-25 12:24:27] 2025-11-25 17:23:40,927 | INFO     | sum of square deviations: 3021765735219.9536
[2025-11-25 12:24:27] 2025-11-25 17:23:41,172 | INFO     | sum of deviations: 9089570717676.576
[2025-11-25 12:24:27] 2025-11-25 17:23:41,172 | INFO     | mean x: 1764026216.338015
[2025-11-25 12:24:27] 2025-11-25 17:23:41,172 | INFO     | mean y: 3475967.0421348317
[2025-11-25 12:24:27] 2025-11-25 17:23:41,172 | INFO     | intersect: -5302772910.676606
[2025-11-25 12:24:27] 2025-11-25 17:23:41,175 | INFO     | chi2: 72.28825519779619
[2025-11-25 12:24:27] 2025-11-25 17:23:41,180 | INFO     | sum of square deviations: 3000599169842.0615
[2025-11-25 12:24:27] 2025-11-25 17:23:41,566 | INFO     | sum of deviations: 10019772872061.006
[2025-11-25 12:24:27] 2025-11-25 17:23:41,566 | INFO     | mean x: 1764026063.8564055
[2025-11-25 12:24:27] 2025-11-25 17:23:41,566 | INFO     | mean y: 3482667.6503988737
[2025-11-25 12:24:27] 2025-11-25 17:23:41,566 | INFO     | intersect: -5887054355.049407
[2025-11-25 12:24:27] 2025-11-25 17:23:41,573 | INFO     | chi2: 68.1137896053042
[2025-11-25 12:24:27] 2025-11-25 17:23:41,574 | INFO     | current chi2=68.1137896053042 (change=5.7747494127085375 %)
[2025-11-25 12:24:27] 2025-11-25 17:23:41,574 | INFO     | right removable region: 2130
[2025-11-25 12:24:27] 2025-11-25 17:23:41,581 | INFO     | sum of square deviations: 3000588957222.0576
[2025-11-25 12:24:27] 2025-11-25 17:23:41,810 | INFO     | sum of deviations: 7961164331814.711
[2025-11-25 12:24:27] 2025-11-25 17:23:41,815 | INFO     | mean x: 1764026368.8564055
[2025-11-25 12:24:27] 2025-11-25 17:23:41,815 | INFO     | mean y: 3484093.9859221024
[2025-11-25 12:24:27] 2025-11-25 17:23:41,815 | INFO     | intersect: -4676831673.463241
[2025-11-25 12:24:27] 2025-11-25 17:23:41,823 | INFO     | chi2: 67.51916392554075
[2025-11-25 12:24:27] 2025-11-25 17:23:41,823 | INFO     | current chi2=67.51916392554075 (change=6.597325193707027 %)
[2025-11-25 12:24:27] 2025-11-25 17:23:41,823 | INFO     | left removable region: 10
[2025-11-25 12:24:27] 2025-11-25 17:23:41,826 | INFO     | sum of square deviations: 2954360999045.394
[2025-11-25 12:24:27] 2025-11-25 17:23:42,116 | INFO     | sum of deviations: 8021192598043.844
[2025-11-25 12:24:27] 2025-11-25 17:23:42,116 | INFO     | mean x: 1764026338.396698
[2025-11-25 12:24:27] 2025-11-25 17:23:42,116 | INFO     | mean y: 3499772.323584906
[2025-11-25 12:24:27] 2025-11-25 17:23:42,116 | INFO     | intersect: -4785892929.811991
[2025-11-25 12:24:27] 2025-11-25 17:23:42,124 | INFO     | chi2: 58.49634610432024
[2025-11-25 12:24:27] 2025-11-25 17:23:42,124 | INFO     | current memory leak: 2.72 B/s (using 2120 data points, chi2=58.50)
[2025-11-25 12:24:27] 2025-11-25 17:23:42,127 | INFO     | could have reported an average CPU frequency of 2451 MHz (74 samples)
[2025-11-25 12:24:27] 2025-11-25 17:23:42,127 | INFO     | ..............................
[2025-11-25 12:24:27] 2025-11-25 17:23:42,128 | INFO     | . Timing measurements:
[2025-11-25 12:24:27] 2025-11-25 17:23:42,128 | INFO     | . get job = 1 s
[2025-11-25 12:24:27] 2025-11-25 17:23:42,128 | INFO     | . initial setup = 13 s
[2025-11-25 12:24:27] 2025-11-25 17:23:42,128 | INFO     | . payload setup = 93 s
[2025-11-25 12:24:27] 2025-11-25 17:23:42,128 | INFO     | . stage-in = 1 s
[2025-11-25 12:24:27] 2025-11-25 17:23:42,128 | INFO     | . payload execution = 130343 s
[2025-11-25 12:24:27] 2025-11-25 17:23:42,128 | INFO     | . stage-out = 16 s
[2025-11-25 12:24:27] 2025-11-25 17:23:42,129 | INFO     | . log creation = 6 s
[2025-11-25 12:24:27] 2025-11-25 17:23:42,129 | INFO     | ..............................
[2025-11-25 12:24:27] 2025-11-25 17:23:42,507 | INFO     | 
[2025-11-25 12:24:27] 2025-11-25 17:23:42,526 | INFO     | job summary report
[2025-11-25 12:24:27] 2025-11-25 17:23:42,526 | INFO     | --------------------------------------------------
[2025-11-25 12:24:27] 2025-11-25 17:23:42,526 | INFO     | PanDA job id: 6895348420
[2025-11-25 12:24:27] 2025-11-25 17:23:42,526 | INFO     | task id: 47556137
[2025-11-25 12:24:27] 2025-11-25 17:23:42,526 | INFO     | errors: (none)
[2025-11-25 12:24:27] 2025-11-25 17:23:42,526 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 12:24:27] 2025-11-25 17:23:42,527 | INFO     | pilot state: finished 
[2025-11-25 12:24:27] 2025-11-25 17:23:42,527 | INFO     | transexitcode: 0
[2025-11-25 12:24:27] 2025-11-25 17:23:42,527 | INFO     | exeerrorcode: 0
[2025-11-25 12:24:27] 2025-11-25 17:23:42,527 | INFO     | exeerrordiag: 
[2025-11-25 12:24:27] 2025-11-25 17:23:42,527 | INFO     | exitcode: 0
[2025-11-25 12:24:27] 2025-11-25 17:23:42,527 | INFO     | exitmsg: OK
[2025-11-25 12:24:27] 2025-11-25 17:23:42,527 | INFO     | cpuconsumptiontime: 368577 s
[2025-11-25 12:24:27] 2025-11-25 17:23:42,527 | INFO     | nevents: 1000
[2025-11-25 12:24:27] 2025-11-25 17:23:42,527 | INFO     | neventsw: 0
[2025-11-25 12:24:27] 2025-11-25 17:23:42,528 | INFO     | pid: 1795369
[2025-11-25 12:24:27] 2025-11-25 17:23:42,528 | INFO     | pgrp: 1795369
[2025-11-25 12:24:27] 2025-11-25 17:23:42,528 | INFO     | corecount: 12
[2025-11-25 12:24:27] 2025-11-25 17:23:42,528 | INFO     | event service: False
[2025-11-25 12:24:27] 2025-11-25 17:23:42,528 | INFO     | sizes: {0: 2297927, 1: 2298528, 2: 2298612, 7: 2298668, 9: 2298668, 11: 2298839, 12: 2298995, 29: 2299023, 41: 2299051, 52: 2299079, 64: 2299163, 69: 2299705, 77: 
[2025-11-25 12:24:27] 2025-11-25 17:23:42,528 | INFO     | --------------------------------------------------
[2025-11-25 12:24:27] 2025-11-25 17:23:42,528 | INFO     | 
[2025-11-25 12:24:27] 2025-11-25 17:23:42,528 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-25 12:24:27] 2025-11-25 17:23:42,626 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 12:24:27] 2025-11-25 17:23:42,626 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 12:24:27] 2025-11-25 17:23:42,626 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 12:24:27] 2025-11-25 17:23:42,626 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 12:24:27] 2025-11-25 17:23:42,626 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 12:24:27] 2025-11-25 17:23:42,627 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 12:24:27] 2025-11-25 17:23:42,627 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 12:24:27] 2025-11-25 17:23:42,627 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 12:24:27] 2025-11-25 17:23:42,627 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 12:24:27] 2025-11-25 17:23:42,627 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 12:24:27] 2025-11-25 17:23:42,627 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 12:24:27] 2025-11-25 17:23:42,627 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 12:24:27] 2025-11-25 17:23:42,628 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 12:24:27] 2025-11-25 17:23:42,628 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 12:24:27] 2025-11-25 17:23:42,628 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 12:24:27] 2025-11-25 17:23:42,628 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 12:24:27] 2025-11-25 17:23:42,628 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 12:24:27] 2025-11-25 17:23:42,628 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 12:24:27] 2025-11-25 17:23:42,628 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 12:24:27] 2025-11-25 17:23:42,628 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 12:24:27] 2025-11-25 17:23:42,629 | INFO     | job 6895348420 has completed (purged errors)
[2025-11-25 12:24:27] 2025-11-25 17:23:42,629 | INFO     | overall cleanup function is called
[2025-11-25 12:24:27] 2025-11-25 17:23:43,489 | INFO     | PID=1784076 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 12:24:27] 2025-11-25 17:23:43,490 | INFO     | .. there are 9 such processes running
[2025-11-25 12:24:27] 2025-11-25 17:23:44,006 | INFO     | --- collectZombieJob: --- 10, [1795369]
[2025-11-25 12:24:27] 2025-11-25 17:23:44,006 | INFO     | zombie collector waiting for pid 1795369
[2025-11-25 12:24:27] 2025-11-25 17:23:44,006 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 12:24:27] 2025-11-25 17:23:44,007 | INFO     | collected zombie processes
[2025-11-25 12:24:27] 2025-11-25 17:23:44,007 | INFO     | will attempt to kill all subprocesses of pid=1795369
[2025-11-25 12:24:27] 2025-11-25 17:23:46,721 | INFO     | process IDs to be killed: [1795369] (in reverse order)
[2025-11-25 12:24:27] 2025-11-25 17:23:47,086 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 12:24:27] 2025-11-25 17:23:47,087 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 12:24:27] 2025-11-25 17:23:47,156 | INFO     | did not find any defunct processes belonging to 1795369
[2025-11-25 12:24:27] 2025-11-25 17:23:47,247 | INFO     | did not find any defunct processes belonging to 1795369
[2025-11-25 12:24:27] 2025-11-25 17:23:47,275 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 12:24:27] 2025-11-25 17:23:47,275 | INFO     | ready for new job
[2025-11-25 12:24:27] 2025-11-25 17:23:47,276 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 12:24:27] 2025-11-25 17:23:47,389 | INFO     | ***************************************
[2025-11-25 12:24:27] 2025-11-25 17:23:47,389 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 12:24:27] 2025-11-25 17:23:47,389 | INFO     | ***************************************
[2025-11-25 12:24:27] 2025-11-25 17:23:47,389 | INFO     | 
[2025-11-25 12:24:27] 2025-11-25 17:23:47,461 | INFO     | architecture information:
[2025-11-25 12:24:27] 2025-11-25 17:23:47,493 | INFO     | executing command: cat /etc/os-release
[2025-11-25 12:24:27] 2025-11-25 17:23:47,594 | INFO     | cat /etc/os-release:
[2025-11-25 12:24:27] NAME="CentOS Linux"
[2025-11-25 12:24:27] VERSION="7 (Core)"
[2025-11-25 12:24:27] ID="centos"
[2025-11-25 12:24:27] ID_LIKE="rhel fedora"
[2025-11-25 12:24:27] VERSION_ID="7"
[2025-11-25 12:24:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 12:24:27] ANSI_COLOR="0;31"
[2025-11-25 12:24:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 12:24:27] HOME_URL="https://www.centos.org/"
[2025-11-25 12:24:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 12:24:27] 
[2025-11-25 12:24:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 12:24:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 12:24:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 12:24:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 12:24:27] 
[2025-11-25 12:24:27] 2025-11-25 17:23:47,595 | INFO     | ***************************************
[2025-11-25 12:24:27] 2025-11-25 17:23:48,181 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-25 12:24:27] 2025-11-25 17:23:48,231 | INFO     | sufficient remaining disk space (61005103104 B)
[2025-11-25 12:24:27] 2025-11-25 17:23:48,232 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 12:24:27] 2025-11-25 17:23:48,232 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 12:24:27] 2025-11-25 17:23:48,232 | INFO     | update_server=False
[2025-11-25 12:24:27] 2025-11-25 17:23:48,232 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 12:24:27] 2025-11-25 17:23:48,233 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 12:24:27] 2025-11-25 17:23:48,353 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:24:27] 2025-11-25 17:23:48,441 | INFO     | all job control threads have been joined
[2025-11-25 12:24:27] 2025-11-25 17:23:49,046 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:24:27] 2025-11-25 17:23:49,047 | INFO     | aborting loop
[2025-11-25 12:24:27] 2025-11-25 17:23:49,158 | INFO     | all data control threads have been joined
[2025-11-25 12:24:27] 2025-11-25 17:23:49,238 | INFO     | [job] retrieve thread has finished
[2025-11-25 12:24:27] 2025-11-25 17:23:49,359 | INFO     | [job] queue monitor thread has finished
[2025-11-25 12:24:27] 2025-11-25 17:23:49,428 | INFO     | [data] copytool_in thread has finished
[2025-11-25 12:24:27] 2025-11-25 17:23:49,447 | INFO     | [job] control thread has finished
[2025-11-25 12:24:27] 2025-11-25 17:23:49,466 | INFO     | [payload] failed_post thread has finished
[2025-11-25 12:24:27] 2025-11-25 17:23:49,492 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 12:24:27] 2025-11-25 17:23:49,822 | INFO     | all payload control threads have been joined
[2025-11-25 12:24:27] 2025-11-25 17:23:49,845 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 12:24:27] 2025-11-25 17:23:49,877 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 12:24:27] 2025-11-25 17:23:49,895 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 12:24:27] 2025-11-25 17:23:50,042 | INFO     | [job] validate thread has finished
[2025-11-25 12:24:27] 2025-11-25 17:23:50,073 | INFO     | [job] job monitor thread has finished
[2025-11-25 12:24:27] 2025-11-25 17:23:50,165 | INFO     | [data] control thread has finished
[2025-11-25 12:24:27] 2025-11-25 17:23:50,390 | INFO     | [data] copytool_out thread has finished
[2025-11-25 12:24:27] 2025-11-25 17:23:50,688 | INFO     | [payload] validate_post thread has finished
[2025-11-25 12:24:27] 2025-11-25 17:23:50,828 | INFO     | [payload] control thread has finished
[2025-11-25 12:24:27] 2025-11-25 17:23:50,992 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 12:24:27] 2025-11-25 17:23:55,040 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 12:24:27] 2025-11-25 17:24:07,341 | INFO     | [monitor] cgroup control has ended
[2025-11-25 12:24:27] 2025-11-25 17:24:08,348 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139814549862208)>', '<ExcThread(monitor, started 139813382510336)>']
[2025-11-25 12:24:27] 2025-11-25 17:24:13,377 | INFO     | all workflow threads have been joined
[2025-11-25 12:24:27] 2025-11-25 17:24:13,377 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 12:24:27] 2025-11-25 17:24:13,378 | INFO     | traces error code: 0
[2025-11-25 12:24:27] 2025-11-25 17:24:13,378 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 12:24:27] 2025-11-25 17:24:22,580 | INFO     | PID=1784076 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 12:24:27] 2025-11-25 17:24:22,581 | INFO     | .. there are 9 such processes running
[2025-11-25 12:24:27] 2025-11-25 17:24:22,623 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 12:24:27] 2025-11-25 17:24:22,624 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 12:24:27] 2025-11-25 17:24:22,624 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 12:24:27] 2025-11-25 17:24:22,624 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 12:24:27] 2025-11-25 17:24:22,624 | INFO     | [monitor] control thread has ended
[2025-11-25 12:24:27] 2025-11-25 17:24:25,616 [wrapper] ==== pilot stdout END ====
[2025-11-25 12:24:27] 2025-11-25 17:24:25,635 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 12:24:27] 2025-11-25 17:24:25,662 [wrapper] pilotpid: 1784076
[2025-11-25 12:24:27] 2025-11-25 17:24:25,675 [wrapper] Pilot exit status: 0
[2025-11-25 12:24:27] 2025-11-25 17:24:25,822 [wrapper] pandaids: 6895348420
[2025-11-25 12:24:27] 2025-11-25 17:24:26,091 [wrapper] cleanup supervisor_pilot  640449 1784077
[2025-11-25 12:24:27] 2025-11-25 17:24:26,103 [wrapper] Test setup, not cleaning
[2025-11-25 12:24:27] 2025-11-25 17:24:26,117 [wrapper] apfmon messages muted
[2025-11-25 12:24:27] 2025-11-25 17:24:26,140 [wrapper] ==== wrapper stdout END ====
[2025-11-25 12:24:27] 2025-11-25 17:24:26,155 [wrapper] ==== wrapper stderr END ====
[2025-11-25 12:24:27]  *** Error codes and diagnostics ***
[2025-11-25 12:24:27]     "exeErrorCode": 0,
[2025-11-25 12:24:27]     "exeErrorDiag": "",
[2025-11-25 12:24:27]     "pilotErrorCode": 0,
[2025-11-25 12:24:27]     "pilotErrorDiag": "",
[2025-11-25 12:24:27]  *** Listing of results directory ***
[2025-11-25 12:24:27] total 1340984
[2025-11-25 12:24:27] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 14:25 pilot3.tar.gz
[2025-11-25 12:24:27] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 14:44 queuedata.json
[2025-11-25 12:24:27] -rwx------. 1 boincer umatlas     36292 Nov 22 14:47 runpilot2-wrapper.sh
[2025-11-25 12:24:27] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 12:24:27] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:04 run_atlas
[2025-11-25 12:24:27] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:04 job.xml
[2025-11-25 12:24:27] -rw-r--r--. 2 boincer umatlas 411212258 Nov 24 00:04 EVNT.47483658._000478.pool.root.1
[2025-11-25 12:24:27] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:04 shared
[2025-11-25 12:24:27] -rw-r--r--. 2 boincer umatlas    590103 Nov 24 00:04 input.tar.gz
[2025-11-25 12:24:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:04 start_atlas.sh
[2025-11-25 12:24:27] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:04 boinc_lockfile
[2025-11-25 12:24:27] -rw-r--r--. 1 boincer umatlas      2784 Nov 24 00:04 pandaJob.out
[2025-11-25 12:24:27] -rw-------. 1 boincer umatlas        57 Nov 24 00:04 setup.sh.local
[2025-11-25 12:24:27] -rw-------. 1 boincer umatlas    989786 Nov 24 00:06 agis_schedconf.cvmfs.json
[2025-11-25 12:24:27] drwx------. 5 boincer umatlas      4096 Nov 24 00:06 pilot3
[2025-11-25 12:24:27] -rw-r--r--. 1 boincer umatlas       533 Nov 25 10:50 boinc_task_state.xml
[2025-11-25 12:24:27] -rw-------. 1 boincer umatlas 921441243 Nov 25 12:21 HITS.47556137._004735.pool.root.1
[2025-11-25 12:24:27] -rw-r--r--. 1 boincer umatlas      6616 Nov 25 12:22 init_data.xml
[2025-11-25 12:24:27] -rw-------. 1 boincer umatlas      1070 Nov 25 12:22 memory_monitor_summary.json
[2025-11-25 12:24:27] -rw-------. 1 boincer umatlas   1516240 Nov 25 12:23 agis_ddmendpoints.agis.ALL.json
[2025-11-25 12:24:27] -rw-------. 1 boincer umatlas   3324289 Nov 25 12:23 log.47556137._004735.job.log.tgz.1
[2025-11-25 12:24:27] -rw-------. 1 boincer umatlas      8666 Nov 25 12:23 heartbeat.json
[2025-11-25 12:24:27] -rw-------. 1 boincer umatlas        95 Nov 25 12:24 pilot_heartbeat.json
[2025-11-25 12:24:27] -rw-------. 1 boincer umatlas       822 Nov 25 12:24 pilotlog.txt
[2025-11-25 12:24:27] -rw-r--r--. 1 boincer umatlas        29 Nov 25 12:24 wrapper_checkpoint.txt
[2025-11-25 12:24:27] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 12:24 boinc_mmap_file
[2025-11-25 12:24:27] -rw-------. 1 boincer umatlas  14973061 Nov 25 12:24 log.47556137._004735.job.log.1
[2025-11-25 12:24:27] -rw-------. 1 boincer umatlas       353 Nov 25 12:24 output.list
[2025-11-25 12:24:27] -rw-r--r--. 1 boincer umatlas       620 Nov 25 12:24 runtime_log
[2025-11-25 12:24:27] -rw-------. 1 boincer umatlas  18319360 Nov 25 12:24 result.tar.gz
[2025-11-25 12:24:27] -rw-r--r--. 1 boincer umatlas      9346 Nov 25 12:24 runtime_log.err
[2025-11-25 12:24:27] -rw-------. 1 boincer umatlas       669 Nov 25 12:24 MvkKDmfk8g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmrFIKDmKUg23m.diag
[2025-11-25 12:24:27] -rw-r--r--. 1 boincer umatlas     21905 Nov 25 12:24 stderr.txt
[2025-11-25 12:24:27] HITS file was successfully produced:
[2025-11-25 12:24:27] -rw-------. 1 boincer umatlas 921441243 Nov 25 12:21 shared/HITS.pool.root.1
[2025-11-25 12:24:27]  *** Contents of shared directory: ***
[2025-11-25 12:24:27] total 1319920
[2025-11-25 12:24:27] -rw-r--r--. 2 boincer umatlas 411212258 Nov 24 00:04 ATLAS.root_0
[2025-11-25 12:24:27] -rw-r--r--. 2 boincer umatlas    590103 Nov 24 00:04 input.tar.gz
[2025-11-25 12:24:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:04 start_atlas.sh
[2025-11-25 12:24:27] -rw-------. 1 boincer umatlas 921441243 Nov 25 12:21 HITS.pool.root.1
[2025-11-25 12:24:27] -rw-------. 1 boincer umatlas  18319360 Nov 25 12:24 result.tar.gz
12:24:28 (1778161): run_atlas exited; CPU time 371305.975708
12:24:28 (1778161): called boinc_finish(0)

</stderr_txt>
]]>

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