Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:20:28 (9779): wrapper (7.7.26015): starting
21:20:28 (9779): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 21:20:28] Arguments: --nthreads 8
[2025-11-25 21:20:28] Threads: 8
[2025-11-25 21:20:28] Checking for CVMFS
[2025-11-25 21:20:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 21:20:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 21:20:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 21:20:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 21:20:31] 2.11.2.0 24996 284262 138888 153296 0 62 16880343 25165825 4632 130560 11 136471473 99.888 75021692 2798 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-25 21:20:31] CVMFS is ok
[2025-11-25 21:20:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 21:20:31] Checking for apptainer binary...
[2025-11-25 21:20:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 21:20:31] Running /usr/bin/apptainer --version
[2025-11-25 21:20:31] apptainer version 1.3.2-1.el7
[2025-11-25 21:20:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 21:20:44] cg-vwn259.simple-grid.lan
[2025-11-25 21:20:44] apptainer works
[2025-11-25 21:20:44] Set ATHENA_PROC_NUMBER=8
[2025-11-25 21:20:44] Set ATHENA_CORE_NUMBER=8
[2025-11-25 21:20:45] Starting ATLAS job with PandaID=6894258306
[2025-11-25 21:20:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/23 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 21:15:20]  *** The last 200 lines of the pilot log: ***
[2025-11-26 21:15:20] 2025-11-26 20:14:02,975 | INFO     | monitor loop #5774: job 0:6894258306 is in state 'finished'
[2025-11-26 21:15:20] 2025-11-26 20:14:02,975 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:15:20] 2025-11-26 20:14:04,884 | INFO     | time since job start (85765s) is within the limit (172800.0s)
[2025-11-26 21:15:20] 2025-11-26 20:14:05,482 | INFO     | monitor loop #5775: job 0:6894258306 is in state 'finished'
[2025-11-26 21:15:20] 2025-11-26 20:14:05,482 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:15:20] 2025-11-26 20:14:06,891 | INFO     | time since job start (85767s) is within the limit (172800.0s)
[2025-11-26 21:15:20] 2025-11-26 20:14:06,891 | INFO     | 85777s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-26 21:15:20] 2025-11-26 20:14:07,988 | INFO     | monitor loop #5776: job 0:6894258306 is in state 'finished'
[2025-11-26 21:15:20] 2025-11-26 20:14:07,988 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:15:20] 2025-11-26 20:14:08,897 | INFO     | time since job start (85769s) is within the limit (172800.0s)
[2025-11-26 21:15:20] 2025-11-26 20:14:10,500 | INFO     | monitor loop #5777: job 0:6894258306 is in state 'finished'
[2025-11-26 21:15:20] 2025-11-26 20:14:10,500 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:15:20] 2025-11-26 20:14:10,911 | INFO     | time since job start (85771s) is within the limit (172800.0s)
[2025-11-26 21:15:20] 2025-11-26 20:14:12,918 | INFO     | time since job start (85773s) is within the limit (172800.0s)
[2025-11-26 21:15:20] 2025-11-26 20:14:13,008 | INFO     | monitor loop #5778: job 0:6894258306 is in state 'finished'
[2025-11-26 21:15:20] 2025-11-26 20:14:13,008 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:15:20] 2025-11-26 20:14:14,144 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 21:15:20] 2025-11-26 20:14:14,145 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-26 21:15:20] 2025-11-26 20:14:14,147 | INFO     | using path: /var/lib/boinc/slots/23/PanDA_Pilot-6894258306/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 21:15:20] 2025-11-26 20:14:14,148 | INFO     | extracted standard info from prmon json
[2025-11-26 21:15:20] 2025-11-26 20:14:14,148 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 21:15:20] 2025-11-26 20:14:14,148 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 21:15:20] 2025-11-26 20:14:14,188 | INFO     | fitting pss+swap vs Time
[2025-11-26 21:15:20] 2025-11-26 20:14:14,191 | INFO     | sum of square deviations: 843591608688.3009
[2025-11-26 21:15:20] 2025-11-26 20:14:14,276 | INFO     | sum of deviations: 3666849037437.972
[2025-11-26 21:15:20] 2025-11-26 20:14:14,277 | INFO     | mean x: 1764145340.6217766
[2025-11-26 21:15:20] 2025-11-26 20:14:14,277 | INFO     | mean y: 2836963.38252149
[2025-11-26 21:15:20] 2025-11-26 20:14:14,277 | INFO     | intersect: -7665393229.44509
[2025-11-26 21:15:20] 2025-11-26 20:14:14,279 | INFO     | chi2: 23.627325083062445
[2025-11-26 21:15:20] 2025-11-26 20:14:14,281 | INFO     | sum of square deviations: 834560084406.9794
[2025-11-26 21:15:20] 2025-11-26 20:14:14,352 | INFO     | sum of deviations: 4131640748639.575
[2025-11-26 21:15:20] 2025-11-26 20:14:14,353 | INFO     | mean x: 1764145188.1258087
[2025-11-26 21:15:20] 2025-11-26 20:14:14,353 | INFO     | mean y: 2844810.7167505394
[2025-11-26 21:15:20] 2025-11-26 20:14:14,353 | INFO     | intersect: -8730875243.671299
[2025-11-26 21:15:20] 2025-11-26 20:14:14,354 | INFO     | chi2: 20.408196088342752
[2025-11-26 21:15:20] 2025-11-26 20:14:14,361 | INFO     | current chi2=20.408196088342752 (change=13.624601953047014 %)
[2025-11-26 21:15:20] 2025-11-26 20:14:14,361 | INFO     | right removable region: 1390
[2025-11-26 21:15:20] 2025-11-26 20:14:14,363 | INFO     | sum of square deviations: 834559129146.9789
[2025-11-26 21:15:20] 2025-11-26 20:14:14,439 | INFO     | sum of deviations: 3075974774764.3843
[2025-11-26 21:15:20] 2025-11-26 20:14:14,439 | INFO     | mean x: 1764145493.1258087
[2025-11-26 21:15:20] 2025-11-26 20:14:14,439 | INFO     | mean y: 2846939.3177570095
[2025-11-26 21:15:20] 2025-11-26 20:14:14,439 | INFO     | intersect: -6499349066.153747
[2025-11-26 21:15:20] 2025-11-26 20:14:14,441 | INFO     | chi2: 18.751526879872632
[2025-11-26 21:15:20] 2025-11-26 20:14:14,441 | INFO     | current chi2=18.751526879872632 (change=20.636268329355204 %)
[2025-11-26 21:15:20] 2025-11-26 20:14:14,441 | INFO     | left removable region: 10
[2025-11-26 21:15:20] 2025-11-26 20:14:14,443 | INFO     | sum of square deviations: 814916233103.9302
[2025-11-26 21:15:20] 2025-11-26 20:14:14,537 | INFO     | sum of deviations: 3099243797398.861
[2025-11-26 21:15:20] 2025-11-26 20:14:14,538 | INFO     | mean x: 1764145462.6347826
[2025-11-26 21:15:20] 2025-11-26 20:14:14,538 | INFO     | mean y: 2865880.481884058
[2025-11-26 21:15:20] 2025-11-26 20:14:14,538 | INFO     | intersect: -6706433383.26575
[2025-11-26 21:15:20] 2025-11-26 20:14:14,539 | INFO     | chi2: 10.731694097845244
[2025-11-26 21:15:20] 2025-11-26 20:14:14,540 | INFO     | current memory leak: 3.80 B/s (using 1380 data points, chi2=10.73)
[2025-11-26 21:15:20] 2025-11-26 20:14:14,541 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-26 21:15:20] 2025-11-26 20:14:14,541 | INFO     | ..............................
[2025-11-26 21:15:20] 2025-11-26 20:14:14,542 | INFO     | . Timing measurements:
[2025-11-26 21:15:20] 2025-11-26 20:14:14,542 | INFO     | . get job = 0 s
[2025-11-26 21:15:20] 2025-11-26 20:14:14,542 | INFO     | . initial setup = 10 s
[2025-11-26 21:15:20] 2025-11-26 20:14:14,542 | INFO     | . payload setup = 167 s
[2025-11-26 21:15:20] 2025-11-26 20:14:14,542 | INFO     | . stage-in = 0 s
[2025-11-26 21:15:20] 2025-11-26 20:14:14,542 | INFO     | . payload execution = 85307 s
[2025-11-26 21:15:20] 2025-11-26 20:14:14,542 | INFO     | . stage-out = 4 s
[2025-11-26 21:15:20] 2025-11-26 20:14:14,542 | INFO     | . log creation = 1 s
[2025-11-26 21:15:20] 2025-11-26 20:14:14,542 | INFO     | ..............................
[2025-11-26 21:15:20] 2025-11-26 20:14:14,723 | INFO     | 
[2025-11-26 21:15:20] 2025-11-26 20:14:14,723 | INFO     | job summary report
[2025-11-26 21:15:20] 2025-11-26 20:14:14,723 | INFO     | --------------------------------------------------
[2025-11-26 21:15:20] 2025-11-26 20:14:14,723 | INFO     | PanDA job id: 6894258306
[2025-11-26 21:15:20] 2025-11-26 20:14:14,723 | INFO     | task id: 47533967
[2025-11-26 21:15:20] 2025-11-26 20:14:14,723 | INFO     | errors: (none)
[2025-11-26 21:15:20] 2025-11-26 20:14:14,723 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 21:15:20] 2025-11-26 20:14:14,724 | INFO     | pilot state: finished 
[2025-11-26 21:15:20] 2025-11-26 20:14:14,724 | INFO     | transexitcode: 0
[2025-11-26 21:15:20] 2025-11-26 20:14:14,724 | INFO     | exeerrorcode: 0
[2025-11-26 21:15:20] 2025-11-26 20:14:14,724 | INFO     | exeerrordiag: 
[2025-11-26 21:15:20] 2025-11-26 20:14:14,724 | INFO     | exitcode: 0
[2025-11-26 21:15:20] 2025-11-26 20:14:14,724 | INFO     | exitmsg: OK
[2025-11-26 21:15:20] 2025-11-26 20:14:14,724 | INFO     | cpuconsumptiontime: 320543 s
[2025-11-26 21:15:20] 2025-11-26 20:14:14,724 | INFO     | nevents: 1000
[2025-11-26 21:15:20] 2025-11-26 20:14:14,724 | INFO     | neventsw: 0
[2025-11-26 21:15:20] 2025-11-26 20:14:14,724 | INFO     | pid: 20199
[2025-11-26 21:15:20] 2025-11-26 20:14:14,724 | INFO     | pgrp: 20199
[2025-11-26 21:15:20] 2025-11-26 20:14:14,724 | INFO     | corecount: 8
[2025-11-26 21:15:20] 2025-11-26 20:14:14,725 | INFO     | event service: False
[2025-11-26 21:15:20] 2025-11-26 20:14:14,725 | INFO     | sizes: {0: 2284145, 1: 2284344, 2: 2284344, 12: 2284372, 23: 2284400, 34: 2284428, 44: 2284584, 55: 2284612, 66: 2284640, 77: 2284668, 87: 2284724, 93: 2285294, 98
[2025-11-26 21:15:20] 2025-11-26 20:14:14,725 | INFO     | --------------------------------------------------
[2025-11-26 21:15:20] 2025-11-26 20:14:14,725 | INFO     | 
[2025-11-26 21:15:20] 2025-11-26 20:14:14,725 | INFO     | executing command: ls -lF /var/lib/boinc/slots/23
[2025-11-26 21:15:20] 2025-11-26 20:14:14,882 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 21:15:20] 2025-11-26 20:14:14,883 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 21:15:20] 2025-11-26 20:14:14,883 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 21:15:20] 2025-11-26 20:14:14,883 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 21:15:20] 2025-11-26 20:14:14,883 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 21:15:20] 2025-11-26 20:14:14,883 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 21:15:20] 2025-11-26 20:14:14,883 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 21:15:20] 2025-11-26 20:14:14,883 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 21:15:20] 2025-11-26 20:14:14,883 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 21:15:20] 2025-11-26 20:14:14,883 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 21:15:20] 2025-11-26 20:14:14,883 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 21:15:20] 2025-11-26 20:14:14,883 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 21:15:20] 2025-11-26 20:14:14,884 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 21:15:20] 2025-11-26 20:14:14,884 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 21:15:20] 2025-11-26 20:14:14,884 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 21:15:20] 2025-11-26 20:14:14,884 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 21:15:20] 2025-11-26 20:14:14,884 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 21:15:20] 2025-11-26 20:14:14,884 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 21:15:20] 2025-11-26 20:14:14,884 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 21:15:20] 2025-11-26 20:14:14,884 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 21:15:20] 2025-11-26 20:14:14,884 | INFO     | job 6894258306 has completed (purged errors)
[2025-11-26 21:15:20] 2025-11-26 20:14:14,884 | INFO     | overall cleanup function is called
[2025-11-26 21:15:20] 2025-11-26 20:14:15,904 | INFO     | --- collectZombieJob: --- 10, [20199]
[2025-11-26 21:15:20] 2025-11-26 20:14:15,904 | INFO     | zombie collector waiting for pid 20199
[2025-11-26 21:15:20] 2025-11-26 20:14:15,904 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 21:15:20] 2025-11-26 20:14:15,904 | INFO     | collected zombie processes
[2025-11-26 21:15:20] 2025-11-26 20:14:15,904 | INFO     | will attempt to kill all subprocesses of pid=20199
[2025-11-26 21:15:20] 2025-11-26 20:14:16,030 | INFO     | process IDs to be killed: [20199] (in reverse order)
[2025-11-26 21:15:20] 2025-11-26 20:14:16,452 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 21:15:20] 2025-11-26 20:14:16,452 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 21:15:20] 2025-11-26 20:14:16,461 | INFO     | did not find any defunct processes belonging to 20199
[2025-11-26 21:15:20] 2025-11-26 20:14:16,464 | INFO     | did not find any defunct processes belonging to 20199
[2025-11-26 21:15:20] 2025-11-26 20:14:16,505 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 21:15:20] 2025-11-26 20:14:16,505 | INFO     | ready for new job
[2025-11-26 21:15:20] 2025-11-26 20:14:16,505 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 21:15:20] 2025-11-26 20:14:16,510 | INFO     | ***************************************
[2025-11-26 21:15:20] 2025-11-26 20:14:16,511 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 21:15:20] 2025-11-26 20:14:16,511 | INFO     | ***************************************
[2025-11-26 21:15:20] 2025-11-26 20:14:16,511 | INFO     | 
[2025-11-26 21:15:20] 2025-11-26 20:14:16,511 | INFO     | pilot is running in a VM
[2025-11-26 21:15:20] 2025-11-26 20:14:16,512 | INFO     | architecture information:
[2025-11-26 21:15:20] 2025-11-26 20:14:16,518 | INFO     | executing command: cat /etc/os-release
[2025-11-26 21:15:20] 2025-11-26 20:14:16,690 | INFO     | cat /etc/os-release:
[2025-11-26 21:15:20] NAME="CentOS Linux"
[2025-11-26 21:15:20] VERSION="7 (Core)"
[2025-11-26 21:15:20] ID="centos"
[2025-11-26 21:15:20] ID_LIKE="rhel fedora"
[2025-11-26 21:15:20] VERSION_ID="7"
[2025-11-26 21:15:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 21:15:20] ANSI_COLOR="0;31"
[2025-11-26 21:15:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 21:15:20] HOME_URL="https://www.centos.org/"
[2025-11-26 21:15:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 21:15:20] 
[2025-11-26 21:15:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 21:15:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 21:15:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 21:15:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 21:15:20] 
[2025-11-26 21:15:20] 2025-11-26 20:14:16,691 | INFO     | ***************************************
[2025-11-26 21:15:20] 2025-11-26 20:14:17,195 | INFO     | executing command: df -mP /var/lib/boinc/slots/23
[2025-11-26 21:15:20] 2025-11-26 20:14:17,424 | INFO     | sufficient remaining disk space (495457402880 B)
[2025-11-26 21:15:20] 2025-11-26 20:14:17,425 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 21:15:20] 2025-11-26 20:14:17,425 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 21:15:20] 2025-11-26 20:14:17,425 | INFO     | update_server=False
[2025-11-26 21:15:20] 2025-11-26 20:14:17,425 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 21:15:20] 2025-11-26 20:14:17,427 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 21:15:20] 2025-11-26 20:14:17,429 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:15:20] 2025-11-26 20:14:17,429 | INFO     | aborting loop
[2025-11-26 21:15:20] 2025-11-26 20:14:17,799 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 21:15:20] 2025-11-26 20:14:17,893 | INFO     | all payload control threads have been joined
[2025-11-26 21:15:20] 2025-11-26 20:14:18,431 | INFO     | [job] retrieve thread has finished
[2025-11-26 21:15:20] 2025-11-26 20:14:18,435 | INFO     | [job] job monitor thread has finished
[2025-11-26 21:15:20] 2025-11-26 20:14:18,482 | INFO     | [payload] validate_post thread has finished
[2025-11-26 21:15:20] 2025-11-26 20:14:18,515 | INFO     | all data control threads have been joined
[2025-11-26 21:15:20] 2025-11-26 20:14:18,522 | INFO     | [job] validate thread has finished
[2025-11-26 21:15:20] 2025-11-26 20:14:18,720 | INFO     | [payload] failed_post thread has finished
[2025-11-26 21:15:20] 2025-11-26 20:14:18,802 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 21:15:20] 2025-11-26 20:14:18,839 | INFO     | all job control threads have been joined
[2025-11-26 21:15:20] 2025-11-26 20:14:18,840 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 21:15:20] 2025-11-26 20:14:18,846 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 21:15:20] 2025-11-26 20:14:18,899 | INFO     | [payload] control thread has finished
[2025-11-26 21:15:20] 2025-11-26 20:14:18,931 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 21:15:20] 2025-11-26 20:14:19,353 | INFO     | [data] copytool_in thread has finished
[2025-11-26 21:15:20] 2025-11-26 20:14:19,521 | INFO     | [data] control thread has finished
[2025-11-26 21:15:20] 2025-11-26 20:14:19,740 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:15:20] 2025-11-26 20:14:19,806 | INFO     | [data] copytool_out thread has finished
[2025-11-26 21:15:20] 2025-11-26 20:14:19,845 | INFO     | [job] control thread has finished
[2025-11-26 21:15:20] 2025-11-26 20:14:20,746 | INFO     | [job] queue monitor thread has finished
[2025-11-26 21:15:20] 2025-11-26 20:14:21,436 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 21:15:20] 2025-11-26 20:14:46,159 | INFO     | PID=13552 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 21:15:20] 2025-11-26 20:14:46,159 | INFO     | .. there are 9 such processes running
[2025-11-26 21:15:20] 2025-11-26 20:14:46,160 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 21:15:20] 2025-11-26 20:14:46,160 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 21:15:20] 2025-11-26 20:14:46,160 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 21:15:20] 2025-11-26 20:15:09,453 | INFO     | [monitor] cgroup control has ended
[2025-11-26 21:15:20] 2025-11-26 20:15:10,819 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140338476214080)>', '<ExcThread(monitor, started 140338022823680)>']
[2025-11-26 21:15:20] 2025-11-26 20:15:11,310 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 21:15:20] 2025-11-26 20:15:11,310 | INFO     | [monitor] control thread has ended
[2025-11-26 21:15:20] 2025-11-26 20:15:15,845 | INFO     | all workflow threads have been joined
[2025-11-26 21:15:20] 2025-11-26 20:15:15,845 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 21:15:20] 2025-11-26 20:15:15,845 | INFO     | traces error code: 0
[2025-11-26 21:15:20] 2025-11-26 20:15:15,845 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 21:15:20] 2025-11-26 20:15:16,167 [wrapper] ==== pilot stdout END ====
[2025-11-26 21:15:20] 2025-11-26 20:15:16,252 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 21:15:20] 2025-11-26 20:15:16,360 [wrapper] pilotpid: 13552
[2025-11-26 21:15:20] 2025-11-26 20:15:16,484 [wrapper] Pilot exit status: 0
[2025-11-26 21:15:20] 2025-11-26 20:15:16,894 [wrapper] pandaids: 6894258306
[2025-11-26 21:15:20] 2025-11-26 20:15:17,381 [wrapper] cleanup supervisor_pilot 15916 13553
[2025-11-26 21:15:20] 2025-11-26 20:15:17,435 [wrapper] Test setup, not cleaning
[2025-11-26 21:15:20] 2025-11-26 20:15:17,493 [wrapper] apfmon messages muted
[2025-11-26 21:15:20] 2025-11-26 20:15:17,576 [wrapper] ==== wrapper stdout END ====
[2025-11-26 21:15:20] 2025-11-26 20:15:17,694 [wrapper] ==== wrapper stderr END ====
[2025-11-26 21:15:20]  *** Error codes and diagnostics ***
[2025-11-26 21:15:20]     "exeErrorCode": 0,
[2025-11-26 21:15:20]     "exeErrorDiag": "",
[2025-11-26 21:15:20]     "pilotErrorCode": 0,
[2025-11-26 21:15:20]     "pilotErrorDiag": "",
[2025-11-26 21:15:20]  *** Listing of results directory ***
[2025-11-26 21:15:20] total 1329680
[2025-11-26 21:15:20] -rw-r--r--. 1 boinc boinc    576529 Nov 21 04:09 pilot3.tar.gz
[2025-11-26 21:15:20] -rw-r--r--. 1 boinc boinc      5112 Nov 21 04:57 queuedata.json
[2025-11-26 21:15:20] -rwx------. 1 boinc boinc     36292 Nov 21 04:58 runpilot2-wrapper.sh
[2025-11-26 21:15:20] -rw-r--r--. 1 boinc boinc       100 Nov 25 21:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 21:15:20] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 21:20 run_atlas
[2025-11-26 21:15:20] -rw-r--r--. 1 boinc boinc       105 Nov 25 21:20 job.xml
[2025-11-26 21:15:20] -rw-r--r--. 2 boinc boinc 410085009 Nov 25 21:20 EVNT.47493127._002175.pool.root.1
[2025-11-26 21:15:20] drwxrwx--x. 2 boinc boinc        68 Nov 25 21:20 shared
[2025-11-26 21:15:20] -rw-r--r--. 2 boinc boinc    590106 Nov 25 21:20 input.tar.gz
[2025-11-26 21:15:20] -rw-r--r--. 1 boinc boinc      6392 Nov 25 21:20 init_data.xml
[2025-11-26 21:15:20] -rw-r--r--. 2 boinc boinc     15847 Nov 25 21:20 start_atlas.sh
[2025-11-26 21:15:20] -rw-r--r--. 1 boinc boinc         0 Nov 25 21:20 boinc_lockfile
[2025-11-26 21:15:20] -rw-r--r--. 1 boinc boinc      2786 Nov 25 21:20 pandaJob.out
[2025-11-26 21:15:20] -rw-------. 1 boinc boinc    991893 Nov 25 21:24 agis_schedconf.cvmfs.json
[2025-11-26 21:15:20] drwx------. 5 boinc boinc      4096 Nov 25 21:24 pilot3
[2025-11-26 21:15:20] -rw-r--r--. 1 boinc boinc       533 Nov 26 20:50 boinc_task_state.xml
[2025-11-26 21:15:20] -rw-------. 1 boinc boinc 919730512 Nov 26 21:11 HITS.47533967._001469.pool.root.1
[2025-11-26 21:15:20] -rw-------. 1 boinc boinc      1031 Nov 26 21:12 memory_monitor_summary.json
[2025-11-26 21:15:20] -rw-------. 1 boinc boinc   1516240 Nov 26 21:12 agis_ddmendpoints.agis.ALL.json
[2025-11-26 21:15:20] -rw-------. 1 boinc boinc   2488963 Nov 26 21:12 log.47533967._001469.job.log.tgz.1
[2025-11-26 21:15:20] -rw-------. 1 boinc boinc      8633 Nov 26 21:14 heartbeat.json
[2025-11-26 21:15:20] -rw-------. 1 boinc boinc        95 Nov 26 21:14 pilot_heartbeat.json
[2025-11-26 21:15:20] -rw-r--r--. 1 boinc boinc      8192 Nov 26 21:14 boinc_mmap_file
[2025-11-26 21:15:20] -rw-r--r--. 1 boinc boinc        29 Nov 26 21:14 wrapper_checkpoint.txt
[2025-11-26 21:15:20] -rw-------. 1 boinc boinc      4885 Nov 26 21:15 pilotlog.txt
[2025-11-26 21:15:20] -rw-------. 1 boinc boinc  11443336 Nov 26 21:15 log.47533967._001469.job.log.1
[2025-11-26 21:15:20] -rw-------. 1 boinc boinc       353 Nov 26 21:15 output.list
[2025-11-26 21:15:20] -rw-r--r--. 1 boinc boinc       620 Nov 26 21:15 runtime_log
[2025-11-26 21:15:20] -rw-------. 1 boinc boinc  13957120 Nov 26 21:15 result.tar.gz
[2025-11-26 21:15:20] -rw-------. 1 boinc boinc       662 Nov 26 21:15 TM0MDmYTXg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmkIHKDmBPNMjn.diag
[2025-11-26 21:15:20] -rw-r--r--. 1 boinc boinc      8833 Nov 26 21:15 runtime_log.err
[2025-11-26 21:15:20] -rw-r--r--. 1 boinc boinc     21402 Nov 26 21:15 stderr.txt
[2025-11-26 21:15:20] HITS file was successfully produced:
[2025-11-26 21:15:20] -rw-------. 1 boinc boinc 919730512 Nov 26 21:11 shared/HITS.pool.root.1
[2025-11-26 21:15:20]  *** Contents of shared directory: ***
[2025-11-26 21:15:20] total 1312880
[2025-11-26 21:15:20] -rw-r--r--. 2 boinc boinc 410085009 Nov 25 21:20 ATLAS.root_0
[2025-11-26 21:15:20] -rw-r--r--. 2 boinc boinc    590106 Nov 25 21:20 input.tar.gz
[2025-11-26 21:15:20] -rw-r--r--. 2 boinc boinc     15847 Nov 25 21:20 start_atlas.sh
[2025-11-26 21:15:20] -rw-------. 1 boinc boinc 919730512 Nov 26 21:11 HITS.pool.root.1
[2025-11-26 21:15:20] -rw-------. 1 boinc boinc  13957120 Nov 26 21:15 result.tar.gz
21:15:21 (9779): run_atlas exited; CPU time 321072.284503
21:15:21 (9779): called boinc_finish(0)

</stderr_txt>
]]>

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