Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:19:20 (978250): wrapper (7.7.26015): starting
20:19:20 (978250): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 20:19:20] Arguments: --nthreads 3
[2025-11-26 20:19:20] Threads: 3
[2025-11-26 20:19:20] Checking for CVMFS
[2025-11-26 20:19:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 20:19:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 20:19:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 20:19:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 20:19:20] 2.9.2.0 3626579 11542 93260 153333 0 80 9005043 36864000 0 130560 0 4216085 99.866 674497 5734 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 20:19:20] CVMFS is ok
[2025-11-26 20:19:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 20:19:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 20:19:20] Further information can be found at the LHC@home message board.
[2025-11-26 20:19:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 20:19:20] Checking for apptainer binary...
[2025-11-26 20:19:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 20:19:20] Running /usr/bin/apptainer --version
[2025-11-26 20:19:20] apptainer version 1.4.1-1.1
[2025-11-26 20:19:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 20:19:20] thA332
[2025-11-26 20:19:20] apptainer works
[2025-11-26 20:19:20] Set ATHENA_PROC_NUMBER=3
[2025-11-26 20:19:20] Set ATHENA_CORE_NUMBER=3
[2025-11-26 20:19:20] Starting ATLAS job with PandaID=6893887234
[2025-11-26 20:19:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 04:53:05]  *** The last 200 lines of the pilot log: ***
[2025-11-27 04:53:05] VERSION="7 (Core)"
[2025-11-27 04:53:05] ID="centos"
[2025-11-27 04:53:05] ID_LIKE="rhel fedora"
[2025-11-27 04:53:05] VERSION_ID="7"
[2025-11-27 04:53:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 04:53:05] ANSI_COLOR="0;31"
[2025-11-27 04:53:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 04:53:05] HOME_URL="https://www.centos.org/"
[2025-11-27 04:53:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 04:53:05] 
[2025-11-27 04:53:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 04:53:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 04:53:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 04:53:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 04:53:05] 
[2025-11-27 04:53:05] 2025-11-27 03:52:07,234 | INFO     | ***************************************
[2025-11-27 04:53:05] 2025-11-27 03:52:07,737 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 04:53:05] 2025-11-27 03:52:07,747 | INFO     | sufficient remaining disk space (247606542336 B)
[2025-11-27 04:53:05] 2025-11-27 03:52:07,747 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 04:53:05] 2025-11-27 03:52:07,748 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 04:53:05] 2025-11-27 03:52:07,748 | INFO     | update_server=False
[2025-11-27 04:53:05] 2025-11-27 03:52:07,748 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 04:53:05] 2025-11-27 03:52:07,748 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 04:53:05] 2025-11-27 03:52:07,821 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 04:53:05] 2025-11-27 03:52:07,821 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 04:53:05] 2025-11-27 03:52:07,821 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 04:53:05] 2025-11-27 03:52:07,821 | INFO     | will abort loop
[2025-11-27 04:53:05] 2025-11-27 03:52:08,031 | INFO     | all data control threads have been joined
[2025-11-27 04:53:05] 2025-11-27 03:52:08,531 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 04:53:05] 2025-11-27 03:52:08,616 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 04:53:05] 2025-11-27 03:52:08,638 | INFO     | all payload control threads have been joined
[2025-11-27 04:53:05] 2025-11-27 03:52:08,750 | INFO     | [job] retrieve thread has finished
[2025-11-27 04:53:05] 2025-11-27 03:52:08,753 | INFO     | [job] queue monitor thread has finished
[2025-11-27 04:53:05] 2025-11-27 03:52:08,809 | INFO     | [payload] validate_post thread has finished
[2025-11-27 04:53:05] 2025-11-27 03:52:08,826 | INFO     | [job] job monitor thread has finished
[2025-11-27 04:53:05] 2025-11-27 03:52:08,860 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 04:53:05] 2025-11-27 03:52:09,037 | INFO     | [data] control thread has finished
[2025-11-27 04:53:05] 2025-11-27 03:52:09,217 | INFO     | [payload] failed_post thread has finished
[2025-11-27 04:53:05] 2025-11-27 03:52:09,329 | INFO     | all job control threads have been joined
[2025-11-27 04:53:05] 2025-11-27 03:52:09,563 | INFO     | [data] copytool_in thread has finished
[2025-11-27 04:53:05] 2025-11-27 03:52:09,644 | INFO     | [payload] control thread has finished
[2025-11-27 04:53:05] 2025-11-27 03:52:09,675 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 04:53:05] 2025-11-27 03:52:10,075 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 04:53:05] 2025-11-27 03:52:10,078 | INFO     | [job] validate thread has finished
[2025-11-27 04:53:05] 2025-11-27 03:52:10,131 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 04:53:05] 2025-11-27 03:52:10,335 | INFO     | [job] control thread has finished
[2025-11-27 04:53:05] 2025-11-27 03:52:10,622 | INFO     | [data] copytool_out thread has finished
[2025-11-27 04:53:05] 2025-11-27 03:52:12,538 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 04:53:05] 2025-11-27 03:52:38,475 | INFO     | PID=981973 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 04:53:05] 2025-11-27 03:52:38,475 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 04:53:05] 2025-11-27 03:52:38,475 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 04:53:05] 2025-11-27 03:52:38,475 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 04:53:05] 2025-11-27 03:53:00,147 | INFO     | [monitor] cgroup control has ended
[2025-11-27 04:53:05] 2025-11-27 03:53:00,245 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140582321887040)>', '<ExcThread(monitor, started 140581846112000)>']
[2025-11-27 04:53:05] 2025-11-27 03:53:00,590 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 04:53:05] 2025-11-27 03:53:00,591 | INFO     | [monitor] control thread has ended
[2025-11-27 04:53:05] 2025-11-27 03:53:05,270 | INFO     | all workflow threads have been joined
[2025-11-27 04:53:05] 2025-11-27 03:53:05,271 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 04:53:05] 2025-11-27 03:53:05,271 | INFO     | traces error code: 0
[2025-11-27 04:53:05] 2025-11-27 03:53:05,271 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 04:53:05] 2025-11-27 03:53:05,321 [wrapper] ==== pilot stdout END ====
[2025-11-27 04:53:05] 2025-11-27 03:53:05,323 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 04:53:05] 2025-11-27 03:53:05,325 [wrapper] pilotpid: 981973
[2025-11-27 04:53:05] 2025-11-27 03:53:05,328 [wrapper] Pilot exit status: 0
[2025-11-27 04:53:05] 2025-11-27 03:53:05,335 [wrapper] pandaids: 6893887234
[2025-11-27 04:53:05] 2025-11-27 03:53:05,353 [wrapper] cleanup supervisor_pilot 1041533 981974
[2025-11-27 04:53:05] 2025-11-27 03:53:05,355 [wrapper] Test setup, not cleaning
[2025-11-27 04:53:05] 2025-11-27 03:53:05,357 [wrapper] apfmon messages muted
[2025-11-27 04:53:05] 2025-11-27 03:53:05,360 [wrapper] ==== wrapper stdout END ====
[2025-11-27 04:53:05] 2025-11-27 03:53:05,362 [wrapper] ==== wrapper stderr END ====
[2025-11-27 04:53:05]  *** Error codes and diagnostics ***
[2025-11-27 04:53:05]     "exeErrorCode": 0,
[2025-11-27 04:53:05]     "exeErrorDiag": "",
[2025-11-27 04:53:05]     "pilotErrorCode": 0,
[2025-11-27 04:53:05]     "pilotErrorDiag": "",
[2025-11-27 04:53:05]  *** Listing of results directory ***
[2025-11-27 04:53:05] total 1325288
[2025-11-27 04:53:05] -rw-r--r-- 1 boinc boinc    576529 Nov 21 00:11 pilot3.tar.gz
[2025-11-27 04:53:05] -rw-r--r-- 1 boinc boinc      5112 Nov 21 00:19 queuedata.json
[2025-11-27 04:53:05] -rwx------ 1 boinc boinc     36292 Nov 21 00:21 runpilot2-wrapper.sh
[2025-11-27 04:53:05] -rw-r--r-- 1 boinc boinc       100 Nov 26 20:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 04:53:05] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 20:19 run_atlas
[2025-11-27 04:53:05] -rw-r--r-- 1 boinc boinc       105 Nov 26 20:19 job.xml
[2025-11-27 04:53:05] -rw-r--r-- 2 boinc boinc 411944997 Nov 26 20:19 EVNT.47493127._000975.pool.root.1
[2025-11-27 04:53:05] -rw-r--r-- 2 boinc boinc    590098 Nov 26 20:19 input.tar.gz
[2025-11-27 04:53:05] -rw-r--r-- 2 boinc boinc     15847 Nov 26 20:19 start_atlas.sh
[2025-11-27 04:53:05] drwxrwx--x 2 boinc boinc      4096 Nov 26 20:19 shared
[2025-11-27 04:53:05] -rw-r--r-- 1 boinc boinc         0 Nov 26 20:19 boinc_setup_complete
[2025-11-27 04:53:05] -rw-r--r-- 1 boinc boinc      6440 Nov 26 20:19 init_data.xml
[2025-11-27 04:53:05] -rw-r--r-- 1 boinc boinc         0 Nov 26 20:19 boinc_lockfile
[2025-11-27 04:53:05] -rw-r--r-- 1 boinc boinc      2785 Nov 26 20:19 pandaJob.out
[2025-11-27 04:53:05] -rw------- 1 boinc boinc    991522 Nov 26 20:19 agis_schedconf.cvmfs.json
[2025-11-27 04:53:05] drwx------ 5 boinc boinc      4096 Nov 26 20:19 pilot3
[2025-11-27 04:53:05] -rw-r--r-- 1 boinc boinc       532 Nov 27 04:48 boinc_task_state.xml
[2025-11-27 04:53:05] -rw------- 1 boinc boinc 930225306 Nov 27 04:51 HITS.47523449._009748.pool.root.1
[2025-11-27 04:53:05] -rw------- 1 boinc boinc      1025 Nov 27 04:51 memory_monitor_summary.json
[2025-11-27 04:53:05] -rw------- 1 boinc boinc   1516240 Nov 27 04:52 agis_ddmendpoints.agis.ALL.json
[2025-11-27 04:53:05] -rw------- 1 boinc boinc   1192438 Nov 27 04:52 log.47523449._009748.job.log.tgz.1
[2025-11-27 04:53:05] -rw------- 1 boinc boinc        95 Nov 27 04:52 pilot_heartbeat.json
[2025-11-27 04:53:05] -rw------- 1 boinc boinc      8563 Nov 27 04:52 heartbeat.json
[2025-11-27 04:53:05] -rw-r--r-- 1 boinc boinc      8192 Nov 27 04:52 boinc_mmap_file
[2025-11-27 04:53:05] -rw-r--r-- 1 boinc boinc        28 Nov 27 04:52 wrapper_checkpoint.txt
[2025-11-27 04:53:05] -rw------- 1 boinc boinc      4937 Nov 27 04:53 pilotlog.txt
[2025-11-27 04:53:05] -rw------- 1 boinc boinc   4319131 Nov 27 04:53 log.47523449._009748.job.log.1
[2025-11-27 04:53:05] -rw------- 1 boinc boinc       353 Nov 27 04:53 output.list
[2025-11-27 04:53:05] -rw-r--r-- 1 boinc boinc       620 Nov 27 04:53 runtime_log
[2025-11-27 04:53:05] -rw------- 1 boinc boinc   5529600 Nov 27 04:53 result.tar.gz
[2025-11-27 04:53:05] -rw-r--r-- 1 boinc boinc      8898 Nov 27 04:53 runtime_log.err
[2025-11-27 04:53:05] -rw------- 1 boinc boinc       665 Nov 27 04:53 H5yKDmw8Sg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmk9GKDmrwSN2n.diag
[2025-11-27 04:53:05] -rw-r--r-- 1 boinc boinc      8891 Nov 27 04:53 stderr.txt
[2025-11-27 04:53:05] HITS file was successfully produced:
[2025-11-27 04:53:05] -rw------- 1 boinc boinc 930225306 Nov 27 04:51 shared/HITS.pool.root.1
[2025-11-27 04:53:05]  *** Contents of shared directory: ***
[2025-11-27 04:53:05] total 1316716
[2025-11-27 04:53:05] -rw-r--r-- 2 boinc boinc 411944997 Nov 26 20:19 ATLAS.root_0
[2025-11-27 04:53:05] -rw-r--r-- 2 boinc boinc    590098 Nov 26 20:19 input.tar.gz
[2025-11-27 04:53:05] -rw-r--r-- 2 boinc boinc     15847 Nov 26 20:19 start_atlas.sh
[2025-11-27 04:53:05] -rw------- 1 boinc boinc 930225306 Nov 27 04:51 HITS.pool.root.1
[2025-11-27 04:53:05] -rw------- 1 boinc boinc   5529600 Nov 27 04:53 result.tar.gz
04:53:06 (978250): run_atlas exited; CPU time 90902.763253
04:53:06 (978250): called boinc_finish(0)

</stderr_txt>
]]>

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