Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:20:17 (3791495): wrapper (7.7.26015): starting
21:20:17 (3791495): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 21:20:17] Arguments: --nthreads 8
[2025-11-23 21:20:17] Threads: 8
[2025-11-23 21:20:17] Checking for CVMFS
[2025-11-23 21:20:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 21:20:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 21:20:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 21:20:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 21:20:19] 2.13.3.0 9702 26564 315404 153229 3 107 25676853 32935937 22694 16776704 0 139021953 99.700 99416591 32953 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 21:20:19] CVMFS is ok
[2025-11-23 21:20:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 21:20:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 21:20:19] Further information can be found at the LHC@home message board.
[2025-11-23 21:20:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 21:20:19] Checking for apptainer binary...
[2025-11-23 21:20:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 21:20:19] Running /usr/bin/apptainer --version
[2025-11-23 21:20:20] apptainer version 1.4.4-1.el9
[2025-11-23 21:20:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 21:20:20] c-4-37.aglt2.org
[2025-11-23 21:20:20] apptainer works
[2025-11-23 21:20:20] Set ATHENA_PROC_NUMBER=8
[2025-11-23 21:20:20] Set ATHENA_CORE_NUMBER=8
[2025-11-23 21:20:20] Starting ATLAS job with PandaID=6895337444
[2025-11-23 21:20:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
06:20:06 (3791495): BOINC client no longer exists - exiting
06:20:06 (3791495): timer handler: client dead, exiting
06:30:08 (1327913): wrapper (7.7.26015): starting
06:30:08 (1327913): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 06:30:08] Arguments: --nthreads 9
[2025-11-24 06:30:08] Threads: 9
[2025-11-24 06:30:08] This job has been restarted, cleaning up previous attempt
[2025-11-24 06:30:08] Checking for CVMFS
[2025-11-24 06:30:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 06:30:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 06:30:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 06:30:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 06:30:08] 2.13.3.0 9702 27114 317568 153244 2 260 31188878 32935936 23682 16776704 0 141119677 99.700 100960989 32905 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 06:30:08] CVMFS is ok
[2025-11-24 06:30:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 06:30:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 06:30:08] Further information can be found at the LHC@home message board.
[2025-11-24 06:30:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 06:30:08] Checking for apptainer binary...
[2025-11-24 06:30:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 06:30:08] Running /usr/bin/apptainer --version
[2025-11-24 06:30:08] apptainer version 1.4.4-1.el9
[2025-11-24 06:30:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 06:30:09] c-4-37.aglt2.org
[2025-11-24 06:30:09] apptainer works
[2025-11-24 06:30:09] Set ATHENA_PROC_NUMBER=9
[2025-11-24 06:30:09] Set ATHENA_CORE_NUMBER=9
[2025-11-24 06:30:09] Starting ATLAS job with PandaID=6895337444
[2025-11-24 06:30:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 00:58:18]  *** The last 200 lines of the pilot log: ***
[2025-11-25 00:58:18] 2025-11-25 05:57:43,312 | INFO     | PID=1339225 has CPU usage=17.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-25 00:58:18] 2025-11-25 05:57:43,312 | INFO     | .. there are 42 such processes running
[2025-11-25 00:58:18] 2025-11-25 05:57:43,944 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 00:58:18] 2025-11-25 05:57:43,951 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.8401249999997
[2025-11-25 00:58:18] 2025-11-25 05:57:43,958 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895337444/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 00:58:18] 2025-11-25 05:57:43,959 | INFO     | extracted standard info from prmon json
[2025-11-25 00:58:18] 2025-11-25 05:57:43,959 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 00:58:18] 2025-11-25 05:57:43,959 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 00:58:18] 2025-11-25 05:57:43,980 | INFO     | fitting pss+swap vs Time
[2025-11-25 00:58:18] 2025-11-25 05:57:43,982 | INFO     | sum of square deviations: 400462139352.4298
[2025-11-25 00:58:18] 2025-11-25 05:57:44,014 | INFO     | sum of deviations: 2649324982600.1494
[2025-11-25 00:58:18] 2025-11-25 05:57:44,014 | INFO     | mean x: 1764017026.7741046
[2025-11-25 00:58:18] 2025-11-25 05:57:44,014 | INFO     | mean y: 3078483.2038567495
[2025-11-25 00:58:18] 2025-11-25 05:57:44,014 | INFO     | intersect: -11667074371.500248
[2025-11-25 00:58:18] 2025-11-25 05:57:44,016 | INFO     | chi2: 8.038345520653614
[2025-11-25 00:58:18] 2025-11-25 05:57:44,017 | INFO     | sum of square deviations: 394971670259.4196
[2025-11-25 00:58:18] 2025-11-25 05:57:44,048 | INFO     | sum of deviations: 3067424550532.158
[2025-11-25 00:58:18] 2025-11-25 05:57:44,049 | INFO     | mean x: 1764016874.2776754
[2025-11-25 00:58:18] 2025-11-25 05:57:44,049 | INFO     | mean y: 3090095.9197416976
[2025-11-25 00:58:18] 2025-11-25 05:57:44,049 | INFO     | intersect: -13696597945.398191
[2025-11-25 00:58:18] 2025-11-25 05:57:44,050 | INFO     | chi2: 4.424844176630696
[2025-11-25 00:58:18] 2025-11-25 05:57:44,050 | INFO     | current chi2=4.424844176630696 (change=44.9532971024751 %)
[2025-11-25 00:58:18] 2025-11-25 05:57:44,052 | INFO     | sum of square deviations: 389531620716.38153
[2025-11-25 00:58:18] 2025-11-25 05:57:44,084 | INFO     | sum of deviations: 3361055862312.0176
[2025-11-25 00:58:18] 2025-11-25 05:57:44,084 | INFO     | mean x: 1764016721.7812788
[2025-11-25 00:58:18] 2025-11-25 05:57:44,084 | INFO     | mean y: 3098320.466172382
[2025-11-25 00:58:18] 2025-11-25 05:57:44,084 | INFO     | intersect: -15217639685.489643
[2025-11-25 00:58:18] 2025-11-25 05:57:44,086 | INFO     | chi2: 2.349290316056739
[2025-11-25 00:58:18] 2025-11-25 05:57:44,086 | INFO     | current chi2=2.349290316056739 (change=46.90682378230979 %)
[2025-11-25 00:58:18] 2025-11-25 05:57:44,087 | INFO     | sum of square deviations: 384141626523.95154
[2025-11-25 00:58:18] 2025-11-25 05:57:44,120 | INFO     | sum of deviations: 3453101124374.4233
[2025-11-25 00:58:18] 2025-11-25 05:57:44,120 | INFO     | mean x: 1764016569.283054
[2025-11-25 00:58:18] 2025-11-25 05:57:44,121 | INFO     | mean y: 3100922.3472998138
[2025-11-25 00:58:18] 2025-11-25 05:57:44,121 | INFO     | intersect: -15853883008.100624
[2025-11-25 00:58:18] 2025-11-25 05:57:44,122 | INFO     | chi2: 2.018069631512878
[2025-11-25 00:58:18] 2025-11-25 05:57:44,123 | INFO     | current chi2=2.018069631512878 (change=14.09875494229302 %)
[2025-11-25 00:58:18] 2025-11-25 05:57:44,123 | INFO     | right removable region: 1073
[2025-11-25 00:58:18] 2025-11-25 05:57:44,124 | INFO     | sum of square deviations: 394971288522.5278
[2025-11-25 00:58:18] 2025-11-25 05:57:44,160 | INFO     | sum of deviations: 2370206833398.1216
[2025-11-25 00:58:18] 2025-11-25 05:57:44,160 | INFO     | mean x: 1764017179.2758303
[2025-11-25 00:58:18] 2025-11-25 05:57:44,160 | INFO     | mean y: 3086224.558118081
[2025-11-25 00:58:18] 2025-11-25 05:57:44,161 | INFO     | intersect: -10582709994.178368
[2025-11-25 00:58:18] 2025-11-25 05:57:44,162 | INFO     | chi2: 6.247300457250964
[2025-11-25 00:58:18] 2025-11-25 05:57:44,162 | INFO     | current chi2=6.247300457250964 (change=22.28126495434618 %)
[2025-11-25 00:58:18] 2025-11-25 05:57:44,162 | INFO     | left removable region: 10
[2025-11-25 00:58:18] 2025-11-25 05:57:44,164 | INFO     | sum of square deviations: 372458740265.66693
[2025-11-25 00:58:18] 2025-11-25 05:57:44,193 | INFO     | sum of deviations: 3074427234417.532
[2025-11-25 00:58:18] 2025-11-25 05:57:44,193 | INFO     | mean x: 1764016843.784572
[2025-11-25 00:58:18] 2025-11-25 05:57:44,193 | INFO     | mean y: 3111728.1420507994
[2025-11-25 00:58:18] 2025-11-25 05:57:44,193 | INFO     | intersect: -14557806946.05577
[2025-11-25 00:58:18] 2025-11-25 05:57:44,195 | INFO     | chi2: 0.12087836733984562
[2025-11-25 00:58:18] 2025-11-25 05:57:44,195 | INFO     | current memory leak: 8.25 B/s (using 1063 data points, chi2=0.12)
[2025-11-25 00:58:18] 2025-11-25 05:57:44,196 | INFO     | could have reported an average CPU frequency of 2600 MHz (40 samples)
[2025-11-25 00:58:18] 2025-11-25 05:57:44,196 | INFO     | ..............................
[2025-11-25 00:58:18] 2025-11-25 05:57:44,197 | INFO     | . Timing measurements:
[2025-11-25 00:58:18] 2025-11-25 05:57:44,197 | INFO     | . get job = 0 s
[2025-11-25 00:58:18] 2025-11-25 05:57:44,197 | INFO     | . initial setup = 2 s
[2025-11-25 00:58:18] 2025-11-25 05:57:44,197 | INFO     | . payload setup = 4 s
[2025-11-25 00:58:18] 2025-11-25 05:57:44,197 | INFO     | . stage-in = 0 s
[2025-11-25 00:58:18] 2025-11-25 05:57:44,197 | INFO     | . payload execution = 66404 s
[2025-11-25 00:58:18] 2025-11-25 05:57:44,197 | INFO     | . stage-out = 4 s
[2025-11-25 00:58:18] 2025-11-25 05:57:44,197 | INFO     | . log creation = 1 s
[2025-11-25 00:58:18] 2025-11-25 05:57:44,197 | INFO     | ..............................
[2025-11-25 00:58:18] 2025-11-25 05:57:44,313 | INFO     | time since job start (66446s) is within the limit (172800.0s)
[2025-11-25 00:58:18] 2025-11-25 05:57:44,535 | INFO     | 
[2025-11-25 00:58:18] 2025-11-25 05:57:44,535 | INFO     | job summary report
[2025-11-25 00:58:18] 2025-11-25 05:57:44,535 | INFO     | --------------------------------------------------
[2025-11-25 00:58:18] 2025-11-25 05:57:44,535 | INFO     | PanDA job id: 6895337444
[2025-11-25 00:58:18] 2025-11-25 05:57:44,535 | INFO     | task id: 47556137
[2025-11-25 00:58:18] 2025-11-25 05:57:44,536 | INFO     | errors: (none)
[2025-11-25 00:58:18] 2025-11-25 05:57:44,536 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 00:58:18] 2025-11-25 05:57:44,536 | INFO     | pilot state: finished 
[2025-11-25 00:58:18] 2025-11-25 05:57:44,536 | INFO     | transexitcode: 0
[2025-11-25 00:58:18] 2025-11-25 05:57:44,536 | INFO     | exeerrorcode: 0
[2025-11-25 00:58:18] 2025-11-25 05:57:44,536 | INFO     | exeerrordiag: 
[2025-11-25 00:58:18] 2025-11-25 05:57:44,536 | INFO     | exitcode: 0
[2025-11-25 00:58:18] 2025-11-25 05:57:44,536 | INFO     | exitmsg: OK
[2025-11-25 00:58:18] 2025-11-25 05:57:44,536 | INFO     | cpuconsumptiontime: 306596 s
[2025-11-25 00:58:18] 2025-11-25 05:57:44,536 | INFO     | nevents: 1000
[2025-11-25 00:58:18] 2025-11-25 05:57:44,536 | INFO     | neventsw: 0
[2025-11-25 00:58:18] 2025-11-25 05:57:44,537 | INFO     | pid: 1362678
[2025-11-25 00:58:18] 2025-11-25 05:57:44,537 | INFO     | pgrp: 1362678
[2025-11-25 00:58:18] 2025-11-25 05:57:44,537 | INFO     | corecount: 9
[2025-11-25 00:58:18] 2025-11-25 05:57:44,537 | INFO     | event service: False
[2025-11-25 00:58:18] 2025-11-25 05:57:44,537 | INFO     | sizes: {0: 2284259, 3: 2284521, 11: 2284549, 66413: 2339257, 66419: 2348251, 66420: 2348307, 66431: 2348681}
[2025-11-25 00:58:18] 2025-11-25 05:57:44,537 | INFO     | --------------------------------------------------
[2025-11-25 00:58:18] 2025-11-25 05:57:44,537 | INFO     | 
[2025-11-25 00:58:18] 2025-11-25 05:57:44,537 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-25 00:58:18] 2025-11-25 05:57:44,593 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 00:58:18] 2025-11-25 05:57:44,593 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 00:58:18] 2025-11-25 05:57:44,594 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 00:58:18] 2025-11-25 05:57:44,594 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 00:58:18] 2025-11-25 05:57:44,594 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 00:58:18] 2025-11-25 05:57:44,594 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 00:58:18] 2025-11-25 05:57:44,594 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 00:58:18] 2025-11-25 05:57:44,594 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 00:58:18] 2025-11-25 05:57:44,594 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 00:58:18] 2025-11-25 05:57:44,594 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 00:58:18] 2025-11-25 05:57:44,594 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 00:58:18] 2025-11-25 05:57:44,595 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 00:58:18] 2025-11-25 05:57:44,595 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 00:58:18] 2025-11-25 05:57:44,595 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 00:58:18] 2025-11-25 05:57:44,595 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 00:58:18] 2025-11-25 05:57:44,595 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 00:58:18] 2025-11-25 05:57:44,595 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 00:58:18] 2025-11-25 05:57:44,595 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 00:58:18] 2025-11-25 05:57:44,595 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 00:58:18] 2025-11-25 05:57:44,595 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 00:58:18] 2025-11-25 05:57:44,596 | INFO     | job 6895337444 has completed (purged errors)
[2025-11-25 00:58:18] 2025-11-25 05:57:44,596 | INFO     | overall cleanup function is called
[2025-11-25 00:58:18] 2025-11-25 05:57:45,614 | INFO     | --- collectZombieJob: --- 10, [1362678]
[2025-11-25 00:58:18] 2025-11-25 05:57:45,614 | INFO     | zombie collector waiting for pid 1362678
[2025-11-25 00:58:18] 2025-11-25 05:57:45,614 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 00:58:18] 2025-11-25 05:57:45,614 | INFO     | collected zombie processes
[2025-11-25 00:58:18] 2025-11-25 05:57:45,615 | INFO     | will attempt to kill all subprocesses of pid=1362678
[2025-11-25 00:58:18] 2025-11-25 05:57:46,212 | INFO     | process IDs to be killed: [1362678] (in reverse order)
[2025-11-25 00:58:18] 2025-11-25 05:57:46,369 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 00:58:18] 2025-11-25 05:57:46,369 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 00:58:18] 2025-11-25 05:57:46,390 | INFO     | did not find any defunct processes belonging to 1362678
[2025-11-25 00:58:18] 2025-11-25 05:57:46,407 | INFO     | did not find any defunct processes belonging to 1362678
[2025-11-25 00:58:18] 2025-11-25 05:57:46,408 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 00:58:18] 2025-11-25 05:57:46,408 | INFO     | ready for new job
[2025-11-25 00:58:18] 2025-11-25 05:57:46,409 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 00:58:18] 2025-11-25 05:57:46,414 | INFO     | ***************************************
[2025-11-25 00:58:18] 2025-11-25 05:57:46,415 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 00:58:18] 2025-11-25 05:57:46,415 | INFO     | ***************************************
[2025-11-25 00:58:18] 2025-11-25 05:57:46,415 | INFO     | 
[2025-11-25 00:58:18] 2025-11-25 05:57:46,417 | INFO     | architecture information:
[2025-11-25 00:58:18] 2025-11-25 05:57:46,417 | INFO     | executing command: cat /etc/os-release
[2025-11-25 00:58:18] 2025-11-25 05:57:46,445 | INFO     | cat /etc/os-release:
[2025-11-25 00:58:18] NAME="CentOS Linux"
[2025-11-25 00:58:18] VERSION="7 (Core)"
[2025-11-25 00:58:18] ID="centos"
[2025-11-25 00:58:18] ID_LIKE="rhel fedora"
[2025-11-25 00:58:18] VERSION_ID="7"
[2025-11-25 00:58:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 00:58:18] ANSI_COLOR="0;31"
[2025-11-25 00:58:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 00:58:18] HOME_URL="https://www.centos.org/"
[2025-11-25 00:58:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 00:58:18] 
[2025-11-25 00:58:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 00:58:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 00:58:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 00:58:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 00:58:18] 
[2025-11-25 00:58:18] 2025-11-25 05:57:46,446 | INFO     | ***************************************
[2025-11-25 00:58:18] 2025-11-25 05:57:46,949 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-25 00:58:18] 2025-11-25 05:57:47,000 | INFO     | sufficient remaining disk space (71480377344 B)
[2025-11-25 00:58:18] 2025-11-25 05:57:47,001 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 00:58:18] 2025-11-25 05:57:47,001 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 00:58:18] 2025-11-25 05:57:47,001 | INFO     | update_server=False
[2025-11-25 00:58:18] 2025-11-25 05:57:47,001 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 00:58:18] 2025-11-25 05:57:47,022 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 00:58:18] 2025-11-25 05:57:47,024 | INFO     | all job control threads have been joined
[2025-11-25 00:58:18] 2025-11-25 05:57:47,026 | INFO     | aborting loop
[2025-11-25 00:58:18] 2025-11-25 05:57:47,661 | INFO     | all payload control threads have been joined
[2025-11-25 00:58:18] 2025-11-25 05:57:47,975 | INFO     | all data control threads have been joined
[2025-11-25 00:58:18] 2025-11-25 05:57:48,007 | INFO     | [job] retrieve thread has finished
[2025-11-25 00:58:18] 2025-11-25 05:57:48,033 | INFO     | [job] control thread has finished
[2025-11-25 00:58:18] 2025-11-25 05:57:48,034 | INFO     | [job] job monitor thread has finished
[2025-11-25 00:58:18] 2025-11-25 05:57:48,101 | INFO     | [payload] validate_post thread has finished
[2025-11-25 00:58:18] 2025-11-25 05:57:48,109 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 00:58:18] 2025-11-25 05:57:48,177 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 00:58:18] 2025-11-25 05:57:48,225 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 00:58:18] 2025-11-25 05:57:48,328 | INFO     | [job] validate thread has finished
[2025-11-25 00:58:18] 2025-11-25 05:57:48,377 | INFO     | [data] copytool_in thread has finished
[2025-11-25 00:58:18] 2025-11-25 05:57:48,518 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 00:58:18] 2025-11-25 05:57:48,623 | INFO     | [payload] failed_post thread has finished
[2025-11-25 00:58:18] 2025-11-25 05:57:48,668 | INFO     | [payload] control thread has finished
[2025-11-25 00:58:18] 2025-11-25 05:57:48,744 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 00:58:18] 2025-11-25 05:57:48,980 | INFO     | [data] control thread has finished
[2025-11-25 00:58:18] 2025-11-25 05:57:49,098 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 00:58:18] 2025-11-25 05:57:49,322 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 00:58:18] 2025-11-25 05:57:50,184 | INFO     | [data] copytool_out thread has finished
[2025-11-25 00:58:18] 2025-11-25 05:57:50,327 | INFO     | [job] queue monitor thread has finished
[2025-11-25 00:58:18] 2025-11-25 05:57:52,541 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 00:58:18] 2025-11-25 05:58:11,743 | INFO     | [monitor] cgroup control has ended
[2025-11-25 00:58:18] 2025-11-25 05:58:12,599 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139750773434176)>', '<ExcThread(monitor, started 139749914310400)>']
[2025-11-25 00:58:18] 2025-11-25 05:58:17,626 | INFO     | all workflow threads have been joined
[2025-11-25 00:58:18] 2025-11-25 05:58:17,627 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 00:58:18] 2025-11-25 05:58:17,627 | INFO     | traces error code: 0
[2025-11-25 00:58:18] 2025-11-25 05:58:17,627 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 00:58:18] 2025-11-25 05:58:18,093 | INFO     | PID=1339225 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 00:58:18] 2025-11-25 05:58:18,094 | INFO     | .. there are 41 such processes running
[2025-11-25 00:58:18] 2025-11-25 05:58:18,094 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 00:58:18] 2025-11-25 05:58:18,095 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 00:58:18] 2025-11-25 05:58:18,095 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 00:58:18] 2025-11-25 05:58:18,095 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 00:58:18] 2025-11-25 05:58:18,095 | INFO     | [monitor] control thread has ended
[2025-11-25 00:58:18] 2025-11-25 05:58:18,277 [wrapper] ==== pilot stdout END ====
[2025-11-25 00:58:18] 2025-11-25 05:58:18,301 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 00:58:18] 2025-11-25 05:58:18,327 [wrapper] pilotpid: 1339225
[2025-11-25 00:58:18] 2025-11-25 05:58:18,342 [wrapper] Pilot exit status: 0
[2025-11-25 00:58:18] 2025-11-25 05:58:18,355 [wrapper] pandaids: 6895337444 6895337444
[2025-11-25 00:58:18] 2025-11-25 05:58:18,432 [wrapper] cleanup supervisor_pilot  316298 1339226
[2025-11-25 00:58:18] 2025-11-25 05:58:18,440 [wrapper] Test setup, not cleaning
[2025-11-25 00:58:18] 2025-11-25 05:58:18,443 [wrapper] apfmon messages muted
[2025-11-25 00:58:18] 2025-11-25 05:58:18,446 [wrapper] ==== wrapper stdout END ====
[2025-11-25 00:58:18] 2025-11-25 05:58:18,449 [wrapper] ==== wrapper stderr END ====
[2025-11-25 00:58:18]  *** Error codes and diagnostics ***
[2025-11-25 00:58:18]     "exeErrorCode": 0,
[2025-11-25 00:58:18]     "exeErrorDiag": "",
[2025-11-25 00:58:18]     "pilotErrorCode": 0,
[2025-11-25 00:58:18]     "pilotErrorDiag": "",
[2025-11-25 00:58:18]  *** Listing of results directory ***
[2025-11-25 00:58:18] total 1718304
[2025-11-25 00:58:18] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-25 00:58:18] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 02:52 queuedata.json
[2025-11-25 00:58:18] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 02:52 pilot3.tar.gz
[2025-11-25 00:58:18] -rwx------. 1 boincer umatlas     36292 Nov 22 02:53 runpilot2-wrapper.sh
[2025-11-25 00:58:18] -rw-r--r--. 1 boincer umatlas       100 Nov 23 21:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 00:58:18] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 21:20 run_atlas
[2025-11-25 00:58:18] -rw-r--r--. 1 boincer umatlas       105 Nov 23 21:20 job.xml
[2025-11-25 00:58:18] -rw-r--r--. 3 boincer umatlas 410103689 Nov 23 21:20 EVNT.47483658._000304.pool.root.1
[2025-11-25 00:58:18] -rw-r--r--. 3 boincer umatlas 410103689 Nov 23 21:20 ATLAS.root_0
[2025-11-25 00:58:18] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 21:20 start_atlas.sh
[2025-11-25 00:58:18] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 21:20 shared
[2025-11-25 00:58:18] -rw-r--r--. 2 boincer umatlas    590101 Nov 23 21:20 input.tar.gz
[2025-11-25 00:58:18] -rw-r--r--. 1 boincer umatlas         0 Nov 23 21:20 boinc_lockfile
[2025-11-25 00:58:18] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 06:30 pandaJob.out
[2025-11-25 00:58:18] -rw-------. 1 boincer umatlas        57 Nov 24 06:30 setup.sh.local
[2025-11-25 00:58:18] -rw-------. 1 boincer umatlas    989803 Nov 24 06:30 agis_schedconf.cvmfs.json
[2025-11-25 00:58:18] -rw-r--r--. 1 boincer umatlas       533 Nov 25 00:40 boinc_task_state.xml
[2025-11-25 00:58:18] -rw-------. 1 boincer umatlas 912426790 Nov 25 00:56 HITS.47556137._003009.pool.root.1
[2025-11-25 00:58:18] -rw-------. 1 boincer umatlas      1066 Nov 25 00:57 memory_monitor_summary.json
[2025-11-25 00:58:18] -rw-------. 1 boincer umatlas   1516227 Nov 25 00:57 agis_ddmendpoints.agis.ALL.json
[2025-11-25 00:58:18] -rw-------. 1 boincer umatlas   2373655 Nov 25 00:57 log.47556137._003009.job.log.tgz.1
[2025-11-25 00:58:18] -rw-------. 1 boincer umatlas      7948 Nov 25 00:57 heartbeat.json
[2025-11-25 00:58:18] -rw-r--r--. 1 boincer umatlas      6660 Nov 25 00:57 init_data.xml
[2025-11-25 00:58:18] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 00:58 boinc_mmap_file
[2025-11-25 00:58:18] -rw-r--r--. 1 boincer umatlas        29 Nov 25 00:58 wrapper_checkpoint.txt
[2025-11-25 00:58:18] -rw-------. 1 boincer umatlas        96 Nov 25 00:58 pilot_heartbeat.json
[2025-11-25 00:58:18] -rw-------. 1 boincer umatlas       823 Nov 25 00:58 pilotlog.txt
[2025-11-25 00:58:18] -rw-------. 1 boincer umatlas   9126332 Nov 25 00:58 log.47556137._003009.job.log.1
[2025-11-25 00:58:18] -rw-------. 1 boincer umatlas       353 Nov 25 00:58 output.list
[2025-11-25 00:58:18] -rw-r--r--. 1 boincer umatlas       620 Nov 25 00:58 runtime_log
[2025-11-25 00:58:18] -rw-------. 1 boincer umatlas  11520000 Nov 25 00:58 result.tar.gz
[2025-11-25 00:58:18] -rw-r--r--. 1 boincer umatlas      9418 Nov 25 00:58 runtime_log.err
[2025-11-25 00:58:18] -rw-------. 1 boincer umatlas       787 Nov 25 00:58 OwdNDmScxg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDma2JKDmYBvvFn.diag
[2025-11-25 00:58:18] -rw-r--r--. 1 boincer umatlas     23671 Nov 25 00:58 stderr.txt
[2025-11-25 00:58:18] HITS file was successfully produced:
[2025-11-25 00:58:18] -rw-------. 1 boincer umatlas 912426790 Nov 25 00:56 shared/HITS.pool.root.1
[2025-11-25 00:58:18]  *** Contents of shared directory: ***
[2025-11-25 00:58:18] total 1303388
[2025-11-25 00:58:18] -rw-r--r--. 3 boincer umatlas 410103689 Nov 23 21:20 ATLAS.root_0
[2025-11-25 00:58:18] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 21:20 start_atlas.sh
[2025-11-25 00:58:18] -rw-r--r--. 2 boincer umatlas    590101 Nov 23 21:20 input.tar.gz
[2025-11-25 00:58:18] -rw-------. 1 boincer umatlas 912426790 Nov 25 00:56 HITS.pool.root.1
[2025-11-25 00:58:18] -rw-------. 1 boincer umatlas  11520000 Nov 25 00:58 result.tar.gz
00:58:20 (1327913): run_atlas exited; CPU time 307343.611653
00:58:20 (1327913): called boinc_finish(0)

</stderr_txt>
]]>

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