Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:53:54 (1204574): wrapper (7.7.26015): starting
21:53:54 (1204574): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 21:53:54] Arguments: --nthreads 12
[2025-11-22 21:53:54] Threads: 12
[2025-11-22 21:53:54] Checking for CVMFS
[2025-11-22 21:53:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 21:53:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 21:53:55] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 21:53:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 21:53:56] 2.11.5.0 2097640 23377 184416 153198 2 290 34831477 45568000 22000 130560 0 229957598 99.796 129378733 22010 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2025-11-22 21:53:56] CVMFS is ok
[2025-11-22 21:53:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 21:53:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 21:53:56] Further information can be found at the LHC@home message board.
[2025-11-22 21:53:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 21:53:56] Checking for apptainer binary...
[2025-11-22 21:53:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 21:53:56] Running /usr/bin/apptainer --version
[2025-11-22 21:53:56] apptainer version 1.4.1-1.el9
[2025-11-22 21:53:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 21:53:56] wns0049.triumf.lcg
[2025-11-22 21:53:56] apptainer works
[2025-11-22 21:53:56] Set ATHENA_PROC_NUMBER=12
[2025-11-22 21:53:56] Set ATHENA_CORE_NUMBER=12
[2025-11-22 21:53:57] Starting ATLAS job with PandaID=6895348308
[2025-11-22 21:53:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 22:00:34]  *** The last 200 lines of the pilot log: ***
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | could have reported an average CPU frequency of 2695 MHz (4 samples)
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | ..............................
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | . Timing measurements:
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | . get job = 0 s
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | . initial setup = 3 s
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | . payload setup = 19 s
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | . stage-in = 0 s
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | . payload execution = 129 s
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | . stage-out = 0 s
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | . log creation = 0 s
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | ..............................
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895348308/pilotlog.txt
[2025-11-22 22:00:34] 2025-11-23 05:59:43,882 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-22 22:00:34] - Log from pilotlog.txt -
[2025-11-22 22:00:34] 2025-11-23 05:59:43,748 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895348308/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 22:00:34] 2025-11-23 05:59:43,749 | INFO     | extracted standard info from prmon json
[2025-11-22 22:00:34] 2025-11-23 05:59:43,749 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 22:00:34] 2025-11-23 05:59:43,749 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 22:00:34] 2025-11-23 05:59:43,757 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-22 22:00:34] 2025-11-23 05:59:43,758 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 22:00:34] 2025-11-23 05:59:43,758 | WARNING  | wrong length of table data, x=[1763877327.0, 1763877388.0], y=[1264.0, 584852.0] (must be same and length>=4)
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | could have reported an average CPU frequency of 2695 MHz (4 samples)
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | ..............................
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | . Timing measurements:
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | . get job = 0 s
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | . initial setup = 3 s
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | . payload setup = 19 s
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | . stage-in = 0 s
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | . payload execution = 129 s
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | . stage-out = 0 s
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | . log creation = 0 s
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | ..............................
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895348308/pilotlog.txt
[2025-11-22 22:00:34] 2025-11-23 05:59:43,883 | WARNING  | 
[2025-11-22 22:00:34] [begin log extracts]
[2025-11-22 22:00:34] - Log from pilotlog.txt -
[2025-11-22 22:00:34] 2025-11-23 05:59:43,748 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895348308/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 22:00:34] 2025-11-23 05:59:43,749 | INFO     | extracted standard info from prmon json
[2025-11-22 22:00:34] 2025-11-23 05:59:43,749 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 22:00:34] 2025-11-23 05:59:43,749 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 22:00:34] 2025-11-23 05:59:43,757 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-22 22:00:34] 2025-11-23 05:59:43,758 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-22 22:00:34] 2025-11-23 05:59:43,758 | WARNING  | wrong length of table data, x=[1763877327.0, 1763877388.0], y=[1264.0, 584852.0] (must be same and length>=4)
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | could have reported an average CPU frequency of 2695 MHz (4 samples)
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | ..............................
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | . Timing measurements:
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | . get job = 0 s
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | . initial setup = 3 s
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | . payload setup = 19 s
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | . stage-in = 0 s
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | . payload execution = 129 s
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | . stage-out = 0 s
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | . log creation = 0 s
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | ..............................
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-22 22:00:34] 2025-11-23 05:59:43,759 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895348308/pilotlog.txt
[2025-11-22 22:00:34] [end log extracts]
[2025-11-22 22:00:34] 2025-11-23 05:59:43,883 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-22 22:00:34] 2025-11-23 05:59:43,883 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-22 22:00:34] 2025-11-23 05:59:44,191 | INFO     | 
[2025-11-22 22:00:34] 2025-11-23 05:59:44,192 | INFO     | job summary report
[2025-11-22 22:00:34] 2025-11-23 05:59:44,192 | INFO     | --------------------------------------------------
[2025-11-22 22:00:34] 2025-11-23 05:59:44,192 | INFO     | PanDA job id: 6895348308
[2025-11-22 22:00:34] 2025-11-23 05:59:44,192 | INFO     | task id: 47556137
[2025-11-22 22:00:34] 2025-11-23 05:59:44,192 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-22 21:57:17,077 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-22 22:00:34] 2025-11-23 05:59:44,192 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-22 22:00:34] 2025-11-23 05:59:44,192 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 22:00:34] 2025-11-23 05:59:44,192 | INFO     | pilot state: failed 
[2025-11-22 22:00:34] 2025-11-23 05:59:44,192 | INFO     | transexitcode: 65
[2025-11-22 22:00:34] 2025-11-23 05:59:44,192 | INFO     | exeerrorcode: 65
[2025-11-22 22:00:34] 2025-11-23 05:59:44,192 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-22 22:00:34] 2025-11-23 05:59:44,192 | INFO     | exitcode: 65
[2025-11-22 22:00:34] 2025-11-23 05:59:44,192 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-22 22:00:34] 2025-11-23 05:59:44,192 | INFO     | cpuconsumptiontime: 42 s
[2025-11-22 22:00:34] 2025-11-23 05:59:44,192 | INFO     | nevents: 0
[2025-11-22 22:00:34] 2025-11-23 05:59:44,192 | INFO     | neventsw: 0
[2025-11-22 22:00:34] 2025-11-23 05:59:44,193 | INFO     | pid: 1215219
[2025-11-22 22:00:34] 2025-11-23 05:59:44,193 | INFO     | pgrp: 1215219
[2025-11-22 22:00:34] 2025-11-23 05:59:44,193 | INFO     | corecount: 12
[2025-11-22 22:00:34] 2025-11-23 05:59:44,193 | INFO     | event service: False
[2025-11-22 22:00:34] 2025-11-23 05:59:44,193 | INFO     | sizes: {0: 2298702, 10: 2298964, 11: 2298992, 152: 2324541, 153: 2328835, 156: 2328835, 291: 2329129}
[2025-11-22 22:00:34] 2025-11-23 05:59:44,193 | INFO     | --------------------------------------------------
[2025-11-22 22:00:34] 2025-11-23 05:59:44,193 | INFO     | 
[2025-11-22 22:00:34] 2025-11-23 05:59:44,193 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-22 22:00:34] 2025-11-23 05:59:44,261 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 22:00:34] 2025-11-23 05:59:44,261 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 22:00:34] 2025-11-23 05:59:44,261 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 22:00:34] 2025-11-23 05:59:44,261 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 22:00:34] 2025-11-23 05:59:44,261 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 22:00:34] 2025-11-23 05:59:44,261 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 22:00:34] 2025-11-23 05:59:44,261 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 22:00:34] 2025-11-23 05:59:44,261 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 22:00:34] 2025-11-23 05:59:44,261 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 22:00:34] 2025-11-23 05:59:44,261 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 22:00:34] 2025-11-23 05:59:44,261 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 22:00:34] 2025-11-23 05:59:44,261 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 22:00:34] 2025-11-23 05:59:44,262 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 22:00:34] 2025-11-23 05:59:44,262 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 22:00:34] 2025-11-23 05:59:44,262 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 22:00:34] 2025-11-23 05:59:44,262 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 22:00:34] 2025-11-23 05:59:44,262 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 22:00:34] 2025-11-23 05:59:44,262 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 22:00:34] 2025-11-23 05:59:44,262 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 22:00:34] 2025-11-23 05:59:44,262 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 22:00:34] 2025-11-23 05:59:44,262 | INFO     | job 6895348308 has completed (purged errors)
[2025-11-22 22:00:34] 2025-11-23 05:59:44,295 | INFO     | overall cleanup function is called
[2025-11-22 22:00:34] 2025-11-23 05:59:44,392 | INFO     | PID=1208352 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 22:00:34] 2025-11-23 05:59:44,393 | INFO     | .. there are 35 such processes running
[2025-11-22 22:00:34] 2025-11-23 05:59:45,303 | INFO     | --- collectZombieJob: --- 10, [1215219]
[2025-11-22 22:00:34] 2025-11-23 05:59:45,303 | INFO     | zombie collector waiting for pid 1215219
[2025-11-22 22:00:34] 2025-11-23 05:59:45,303 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 22:00:34] 2025-11-23 05:59:45,303 | INFO     | collected zombie processes
[2025-11-22 22:00:34] 2025-11-23 05:59:45,304 | INFO     | will attempt to kill all subprocesses of pid=1215219
[2025-11-22 22:00:34] 2025-11-23 05:59:45,863 | INFO     | process IDs to be killed: [1215219] (in reverse order)
[2025-11-22 22:00:34] 2025-11-23 05:59:45,970 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 22:00:34] 2025-11-23 05:59:45,970 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 22:00:34] 2025-11-23 05:59:45,979 | INFO     | did not find any defunct processes belonging to 1215219
[2025-11-22 22:00:34] 2025-11-23 05:59:45,986 | INFO     | did not find any defunct processes belonging to 1215219
[2025-11-22 22:00:34] 2025-11-23 05:59:45,987 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 22:00:34] 2025-11-23 05:59:45,987 | INFO     | ready for new job
[2025-11-22 22:00:34] 2025-11-23 05:59:45,987 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 22:00:34] 2025-11-23 05:59:45,988 | INFO     | ***************************************
[2025-11-22 22:00:34] 2025-11-23 05:59:45,989 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 22:00:34] 2025-11-23 05:59:45,989 | INFO     | ***************************************
[2025-11-22 22:00:34] 2025-11-23 05:59:45,989 | INFO     | 
[2025-11-22 22:00:34] 2025-11-23 05:59:45,990 | INFO     | architecture information:
[2025-11-22 22:00:34] 2025-11-23 05:59:45,991 | INFO     | executing command: cat /etc/os-release
[2025-11-22 22:00:34] 2025-11-23 05:59:46,002 | INFO     | cat /etc/os-release:
[2025-11-22 22:00:34] NAME="CentOS Linux"
[2025-11-22 22:00:34] VERSION="7 (Core)"
[2025-11-22 22:00:34] ID="centos"
[2025-11-22 22:00:34] ID_LIKE="rhel fedora"
[2025-11-22 22:00:34] VERSION_ID="7"
[2025-11-22 22:00:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 22:00:34] ANSI_COLOR="0;31"
[2025-11-22 22:00:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 22:00:34] HOME_URL="https://www.centos.org/"
[2025-11-22 22:00:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 22:00:34] 
[2025-11-22 22:00:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 22:00:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 22:00:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 22:00:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 22:00:34] 
[2025-11-22 22:00:34] 2025-11-23 05:59:46,002 | INFO     | ***************************************
[2025-11-22 22:00:34] 2025-11-23 05:59:46,509 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-22 22:00:34] 2025-11-23 05:59:46,537 | INFO     | sufficient remaining disk space (1282295201792 B)
[2025-11-22 22:00:34] 2025-11-23 05:59:46,538 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 22:00:34] 2025-11-23 05:59:46,538 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 22:00:34] 2025-11-23 05:59:46,538 | INFO     | update_server=False
[2025-11-22 22:00:34] 2025-11-23 05:59:46,538 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 22:00:34] 2025-11-23 05:59:46,538 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 22:00:34] 2025-11-23 05:59:46,539 | INFO     | all payload control threads have been joined
[2025-11-22 22:00:34] 2025-11-23 05:59:46,849 | INFO     | all job control threads have been joined
[2025-11-22 22:00:34] 2025-11-23 05:59:46,922 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 22:00:34] 2025-11-23 05:59:46,922 | INFO     | aborting loop
[2025-11-22 22:00:34] 2025-11-23 05:59:47,238 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 22:00:34] 2025-11-23 05:59:47,273 | INFO     | all data control threads have been joined
[2025-11-22 22:00:34] 2025-11-23 05:59:47,546 | INFO     | [job] retrieve thread has finished
[2025-11-22 22:00:34] 2025-11-23 05:59:47,555 | INFO     | [payload] control thread has finished
[2025-11-22 22:00:34] 2025-11-23 05:59:47,819 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 22:00:34] 2025-11-23 05:59:47,863 | INFO     | [job] control thread has finished
[2025-11-22 22:00:34] 2025-11-23 05:59:47,927 | INFO     | [job] job monitor thread has finished
[2025-11-22 22:00:34] 2025-11-23 05:59:48,063 | INFO     | [payload] failed_post thread has finished
[2025-11-22 22:00:34] 2025-11-23 05:59:48,279 | INFO     | [data] control thread has finished
[2025-11-22 22:00:34] 2025-11-23 05:59:48,283 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 22:00:34] 2025-11-23 05:59:48,679 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 22:00:34] 2025-11-23 05:59:48,800 | INFO     | [data] copytool_in thread has finished
[2025-11-22 22:00:34] 2025-11-23 05:59:48,813 | INFO     | [job] validate thread has finished
[2025-11-22 22:00:34] 2025-11-23 05:59:48,963 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 22:00:34] 2025-11-23 05:59:49,095 | INFO     | [payload] validate_post thread has finished
[2025-11-22 22:00:34] 2025-11-23 05:59:49,206 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 22:00:34] 2025-11-23 05:59:49,245 | INFO     | [data] copytool_out thread has finished
[2025-11-22 22:00:34] 2025-11-23 05:59:50,212 | INFO     | [job] queue monitor thread has finished
[2025-11-22 22:00:34] 2025-11-23 05:59:50,550 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 22:00:34] 2025-11-23 06:00:17,209 | INFO     | PID=1208352 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 22:00:34] 2025-11-23 06:00:17,210 | INFO     | .. there are 35 such processes running
[2025-11-22 22:00:34] 2025-11-23 06:00:17,210 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 22:00:34] 2025-11-23 06:00:17,210 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 22:00:34] 2025-11-23 06:00:17,210 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 22:00:34] 2025-11-23 06:00:26,760 | INFO     | [monitor] cgroup control has ended
[2025-11-22 22:00:34] 2025-11-23 06:00:28,427 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140704947447616)>', '<ExcThread(monitor, started 140704126854912)>']
[2025-11-22 22:00:34] 2025-11-23 06:00:29,287 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 22:00:34] 2025-11-23 06:00:29,287 | INFO     | [monitor] control thread has ended
[2025-11-22 22:00:34] 2025-11-23 06:00:33,454 | INFO     | all workflow threads have been joined
[2025-11-22 22:00:34] 2025-11-23 06:00:33,455 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 22:00:34] 2025-11-23 06:00:33,455 | INFO     | traces error code: 0
[2025-11-22 22:00:34] 2025-11-23 06:00:33,456 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 22:00:34] 2025-11-23 06:00:33,956 [wrapper] ==== pilot stdout END ====
[2025-11-22 22:00:34] 2025-11-23 06:00:34,000 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 22:00:34] 2025-11-23 06:00:34,002 [wrapper] pilotpid: 1208352
[2025-11-22 22:00:34] 2025-11-23 06:00:34,012 [wrapper] Pilot exit status: 0
[2025-11-22 22:00:34] 2025-11-23 06:00:34,094 [wrapper] pandaids: 6895348308
[2025-11-22 22:00:34] 2025-11-23 06:00:34,176 [wrapper] cleanup supervisor_pilot 1208358 1208353
[2025-11-22 22:00:34] 2025-11-23 06:00:34,204 [wrapper] Test setup, not cleaning
[2025-11-22 22:00:34] 2025-11-23 06:00:34,223 [wrapper] apfmon messages muted
[2025-11-22 22:00:34] 2025-11-23 06:00:34,237 [wrapper] ==== wrapper stdout END ====
[2025-11-22 22:00:34] 2025-11-23 06:00:34,278 [wrapper] ==== wrapper stderr END ====
[2025-11-22 22:00:34]  *** Error codes and diagnostics ***
[2025-11-22 22:00:34]     "exeErrorCode": 65,
[2025-11-22 22:00:34]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-22 22:00:34]     "pilotErrorCode": 1305,
[2025-11-22 22:00:34]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-22 22:00:34]  *** Listing of results directory ***
[2025-11-22 22:00:34] total 403824
[2025-11-22 22:00:34] -rw-r--r--. 1 boinc boinc    576529 Nov 22 11:25 pilot3.tar.gz
[2025-11-22 22:00:34] -rwx------. 1 boinc boinc     36292 Nov 22 11:35 runpilot2-wrapper.sh
[2025-11-22 22:00:34] -rw-r--r--. 1 boinc boinc      5112 Nov 22 11:35 queuedata.json
[2025-11-22 22:00:34] -rw-r--r--. 1 boinc boinc       100 Nov 22 21:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 22:00:34] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 21:53 run_atlas
[2025-11-22 22:00:34] -rw-r--r--. 1 boinc boinc       105 Nov 22 21:53 job.xml
[2025-11-22 22:00:34] -rw-r--r--. 1 boinc boinc      6594 Nov 22 21:53 init_data.xml
[2025-11-22 22:00:34] -rw-r--r--. 2 boinc boinc 409282482 Nov 22 21:53 EVNT.47483658._000474.pool.root.1
[2025-11-22 22:00:34] -rw-r--r--. 2 boinc boinc     15847 Nov 22 21:53 start_atlas.sh
[2025-11-22 22:00:34] drwxrwx--x. 2 boinc boinc      4096 Nov 22 21:53 shared
[2025-11-22 22:00:34] -rw-r--r--. 2 boinc boinc    590100 Nov 22 21:53 input.tar.gz
[2025-11-22 22:00:34] -rw-r--r--. 1 boinc boinc         0 Nov 22 21:53 boinc_lockfile
[2025-11-22 22:00:34] -rw-r--r--. 1 boinc boinc      2784 Nov 22 21:53 pandaJob.out
[2025-11-22 22:00:34] -rw-------. 1 boinc boinc    989784 Nov 22 21:54 agis_schedconf.cvmfs.json
[2025-11-22 22:00:34] -rw-------. 1 boinc boinc   1526164 Nov 22 21:54 agis_ddmendpoints.agis.ALL.json
[2025-11-22 22:00:34] drwx------. 5 boinc boinc      4096 Nov 22 21:54 pilot3
[2025-11-22 22:00:34] -rw-r--r--. 1 boinc boinc       524 Nov 22 21:56 boinc_task_state.xml
[2025-11-22 22:00:34] -rw-------. 1 boinc boinc       996 Nov 22 21:57 memory_monitor_summary.json
[2025-11-22 22:00:34] -rw-------. 1 boinc boinc     49718 Nov 22 21:57 log.47556137._004699.job.log.tgz.1
[2025-11-22 22:00:34] -rw-------. 1 boinc boinc        95 Nov 22 21:59 pilot_heartbeat.json
[2025-11-22 22:00:34] -rw-------. 1 boinc boinc     10338 Nov 22 21:59 heartbeat.json
[2025-11-22 22:00:34] -rw-r--r--. 1 boinc boinc        23 Nov 22 22:00 wrapper_checkpoint.txt
[2025-11-22 22:00:34] -rw-r--r--. 1 boinc boinc      8192 Nov 22 22:00 boinc_mmap_file
[2025-11-22 22:00:34] -rw-------. 1 boinc boinc      4823 Nov 22 22:00 pilotlog.txt
[2025-11-22 22:00:34] -rw-------. 1 boinc boinc    107466 Nov 22 22:00 log.47556137._004699.job.log.1
[2025-11-22 22:00:34] -rw-------. 1 boinc boinc       186 Nov 22 22:00 output.list
[2025-11-22 22:00:34] -rw-r--r--. 1 boinc boinc       620 Nov 22 22:00 runtime_log
[2025-11-22 22:00:34] -rw-------. 1 boinc boinc    174080 Nov 22 22:00 result.tar.gz
[2025-11-22 22:00:34] -rw-r--r--. 1 boinc boinc      8636 Nov 22 22:00 runtime_log.err
[2025-11-22 22:00:34] -rw-------. 1 boinc boinc       645 Nov 22 22:00 3f4MDmRZ8g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmBFIKDmgnAaXn.diag
[2025-11-22 22:00:34] -rw-r--r--. 1 boinc boinc     22527 Nov 22 22:00 stderr.txt
[2025-11-22 22:00:34] No HITS result produced
[2025-11-22 22:00:34]  *** Contents of shared directory: ***
[2025-11-22 22:00:34] total 400464
[2025-11-22 22:00:34] -rw-r--r--. 2 boinc boinc 409282482 Nov 22 21:53 ATLAS.root_0
[2025-11-22 22:00:34] -rw-r--r--. 2 boinc boinc     15847 Nov 22 21:53 start_atlas.sh
[2025-11-22 22:00:34] -rw-r--r--. 2 boinc boinc    590100 Nov 22 21:53 input.tar.gz
[2025-11-22 22:00:34] -rw-------. 1 boinc boinc    174080 Nov 22 22:00 result.tar.gz
22:00:36 (1204574): run_atlas exited; CPU time 46.994167
22:00:36 (1204574): called boinc_finish(0)

</stderr_txt>
]]>

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