Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:42:06 (1889288): wrapper (7.7.26015): starting
05:42:06 (1889288): wrapper: running run_atlas (--nthreads 3)
[2025-11-28 05:42:06] Arguments: --nthreads 3
[2025-11-28 05:42:06] Threads: 3
[2025-11-28 05:42:06] Checking for CVMFS
[2025-11-28 05:42:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 05:42:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 05:42:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 05:42:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 05:42:06] 2.9.2.0 185998 75888 104080 153397 1 81 12965012 36864000 12 130560 0 25772661 99.967 2660537 1619 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-28 05:42:06] CVMFS is ok
[2025-11-28 05:42:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-28 05:42:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-28 05:42:06] Further information can be found at the LHC@home message board.
[2025-11-28 05:42:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 05:42:06] Checking for apptainer binary...
[2025-11-28 05:42:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 05:42:06] Running /usr/bin/apptainer --version
[2025-11-28 05:42:06] apptainer version 1.4.1-1.1
[2025-11-28 05:42:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 05:42:06] thA387a
[2025-11-28 05:42:06] apptainer works
[2025-11-28 05:42:06] Set ATHENA_PROC_NUMBER=3
[2025-11-28 05:42:06] Set ATHENA_CORE_NUMBER=3
[2025-11-28 05:42:06] Starting ATLAS job with PandaID=6894289647
[2025-11-28 05:42:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 13:34:49]  *** The last 200 lines of the pilot log: ***
[2025-11-28 13:34:49] 2025-11-28 12:33:52,186 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-28 13:34:49] 2025-11-28 12:33:52,186 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 13:34:49] 2025-11-28 12:33:52,186 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 13:34:49] 2025-11-28 12:33:52,186 | INFO     | aborting loop
[2025-11-28 13:34:49] 2025-11-28 12:33:52,186 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 13:34:49] 2025-11-28 12:33:52,186 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 13:34:49] 2025-11-28 12:33:52,206 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 13:34:49] 2025-11-28 12:33:52,363 | INFO     | all job control threads have been joined
[2025-11-28 13:34:49] 2025-11-28 12:33:52,857 | INFO     | all data control threads have been joined
[2025-11-28 13:34:49] 2025-11-28 12:33:52,937 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 13:34:49] 2025-11-28 12:33:53,191 | INFO     | [job] retrieve thread has finished
[2025-11-28 13:34:49] 2025-11-28 12:33:53,191 | INFO     | [job] queue monitor thread has finished
[2025-11-28 13:34:49] 2025-11-28 12:33:53,192 | INFO     | [job] job monitor thread has finished
[2025-11-28 13:34:49] 2025-11-28 12:33:53,315 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 13:34:49] 2025-11-28 12:33:53,331 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 13:34:49] 2025-11-28 12:33:53,368 | INFO     | [job] control thread has finished
[2025-11-28 13:34:49] 2025-11-28 12:33:53,464 | INFO     | all payload control threads have been joined
[2025-11-28 13:34:49] 2025-11-28 12:33:53,806 | INFO     | [payload] failed_post thread has finished
[2025-11-28 13:34:49] 2025-11-28 12:33:53,860 | INFO     | [data] control thread has finished
[2025-11-28 13:34:49] 2025-11-28 12:33:54,075 | INFO     | [data] copytool_in thread has finished
[2025-11-28 13:34:49] 2025-11-28 12:33:54,348 | INFO     | [payload] validate_post thread has finished
[2025-11-28 13:34:49] 2025-11-28 12:33:54,470 | INFO     | [payload] control thread has finished
[2025-11-28 13:34:49] 2025-11-28 12:33:54,624 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 13:34:49] 2025-11-28 12:33:54,625 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 13:34:49] 2025-11-28 12:33:54,636 | INFO     | [job] validate thread has finished
[2025-11-28 13:34:49] 2025-11-28 12:33:54,942 | INFO     | [data] copytool_out thread has finished
[2025-11-28 13:34:49] 2025-11-28 12:33:56,212 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 13:34:49] 2025-11-28 12:34:43,706 | INFO     | [monitor] cgroup control has ended
[2025-11-28 13:34:49] 2025-11-28 12:34:44,580 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139961884886848)>', '<ExcThread(monitor, started 139961038796544)>']
[2025-11-28 13:34:49] 2025-11-28 12:34:45,380 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 13:34:49] 2025-11-28 12:34:45,381 | INFO     | [monitor] control thread has ended
[2025-11-28 13:34:49] 2025-11-28 12:34:49,592 | INFO     | all workflow threads have been joined
[2025-11-28 13:34:49] 2025-11-28 12:34:49,593 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 13:34:49] 2025-11-28 12:34:49,593 | INFO     | traces error code: 0
[2025-11-28 13:34:49] 2025-11-28 12:34:49,593 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 13:34:49] 2025-11-28 12:34:49,641 [wrapper] ==== pilot stdout END ====
[2025-11-28 13:34:49] 2025-11-28 12:34:49,644 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 13:34:49] 2025-11-28 12:34:49,646 [wrapper] pilotpid: 1893007
[2025-11-28 13:34:49] 2025-11-28 12:34:49,649 [wrapper] Pilot exit status: 0
[2025-11-28 13:34:49] 2025-11-28 12:34:49,656 [wrapper] pandaids: 6894289647
[2025-11-28 13:34:49] 2025-11-28 12:34:49,672 [wrapper] cleanup supervisor_pilot 1949968 1893008
[2025-11-28 13:34:49] 2025-11-28 12:34:49,675 [wrapper] Test setup, not cleaning
[2025-11-28 13:34:49] 2025-11-28 12:34:49,677 [wrapper] apfmon messages muted
[2025-11-28 13:34:49] 2025-11-28 12:34:49,679 [wrapper] ==== wrapper stdout END ====
[2025-11-28 13:34:49] 2025-11-28 12:34:49,681 [wrapper] ==== wrapper stderr END ====
[2025-11-28 13:34:49]  *** Error codes and diagnostics ***
[2025-11-28 13:34:49]     "exeErrorCode": 0,
[2025-11-28 13:34:49]     "exeErrorDiag": "",
[2025-11-28 13:34:49]     "pilotErrorCode": 0,
[2025-11-28 13:34:49]     "pilotErrorDiag": "",
[2025-11-28 13:34:49]  *** Listing of results directory ***
[2025-11-28 13:34:49] total 1328468
[2025-11-28 13:34:49] -rw-r--r-- 1 boinc boinc    576529 Nov 21 12:23 pilot3.tar.gz
[2025-11-28 13:34:49] -rwx------ 1 boinc boinc     36292 Nov 21 12:26 runpilot2-wrapper.sh
[2025-11-28 13:34:49] -rw-r--r-- 1 boinc boinc      5112 Nov 21 12:26 queuedata.json
[2025-11-28 13:34:49] -rw-r--r-- 1 boinc boinc       100 Nov 28 05:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 13:34:49] -rwxr-xr-x 1 boinc boinc      7986 Nov 28 05:42 run_atlas
[2025-11-28 13:34:49] -rw-r--r-- 1 boinc boinc       105 Nov 28 05:42 job.xml
[2025-11-28 13:34:49] -rw-r--r-- 2 boinc boinc 412301883 Nov 28 05:42 EVNT.47493127._002407.pool.root.1
[2025-11-28 13:34:49] -rw-r--r-- 2 boinc boinc    590101 Nov 28 05:42 input.tar.gz
[2025-11-28 13:34:49] -rw-r--r-- 2 boinc boinc     15847 Nov 28 05:42 start_atlas.sh
[2025-11-28 13:34:49] drwxrwx--x 2 boinc boinc      4096 Nov 28 05:42 shared
[2025-11-28 13:34:49] -rw-r--r-- 1 boinc boinc         0 Nov 28 05:42 boinc_setup_complete
[2025-11-28 13:34:49] -rw-r--r-- 1 boinc boinc      6441 Nov 28 05:42 init_data.xml
[2025-11-28 13:34:49] -rw-r--r-- 1 boinc boinc         0 Nov 28 05:42 boinc_lockfile
[2025-11-28 13:34:49] -rw-r--r-- 1 boinc boinc      2784 Nov 28 05:42 pandaJob.out
[2025-11-28 13:34:49] -rw------- 1 boinc boinc    991858 Nov 28 05:42 agis_schedconf.cvmfs.json
[2025-11-28 13:34:49] drwx------ 5 boinc boinc      4096 Nov 28 05:42 pilot3
[2025-11-28 13:34:49] -rw-r--r-- 1 boinc boinc       531 Nov 28 13:30 boinc_task_state.xml
[2025-11-28 13:34:49] -rw------- 1 boinc boinc 933863483 Nov 28 13:33 HITS.47533967._003784.pool.root.1
[2025-11-28 13:34:49] -rw------- 1 boinc boinc        95 Nov 28 13:33 pilot_heartbeat.json
[2025-11-28 13:34:49] -rw------- 1 boinc boinc      1028 Nov 28 13:33 memory_monitor_summary.json
[2025-11-28 13:34:49] -rw------- 1 boinc boinc   1516240 Nov 28 13:33 agis_ddmendpoints.agis.ALL.json
[2025-11-28 13:34:49] -rw------- 1 boinc boinc   1158680 Nov 28 13:33 log.47533967._003784.job.log.tgz.1
[2025-11-28 13:34:49] -rw------- 1 boinc boinc      8567 Nov 28 13:33 heartbeat.json
[2025-11-28 13:34:49] -rw-r--r-- 1 boinc boinc      8192 Nov 28 13:34 boinc_mmap_file
[2025-11-28 13:34:49] -rw-r--r-- 1 boinc boinc        28 Nov 28 13:34 wrapper_checkpoint.txt
[2025-11-28 13:34:49] -rw------- 1 boinc boinc      4556 Nov 28 13:34 pilotlog.txt
[2025-11-28 13:34:49] -rw------- 1 boinc boinc   3984821 Nov 28 13:34 log.47533967._003784.job.log.1
[2025-11-28 13:34:49] -rw------- 1 boinc boinc       353 Nov 28 13:34 output.list
[2025-11-28 13:34:49] -rw-r--r-- 1 boinc boinc       620 Nov 28 13:34 runtime_log
[2025-11-28 13:34:49] -rw------- 1 boinc boinc   5160960 Nov 28 13:34 result.tar.gz
[2025-11-28 13:34:49] -rw------- 1 boinc boinc       666 Nov 28 13:34 ubzKDmoSeg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmUZHKDmVfIx7m.diag
[2025-11-28 13:34:49] -rw-r--r-- 1 boinc boinc      8903 Nov 28 13:34 runtime_log.err
[2025-11-28 13:34:49] -rw-r--r-- 1 boinc boinc      6993 Nov 28 13:34 stderr.txt
[2025-11-28 13:34:49] HITS file was successfully produced:
[2025-11-28 13:34:49] -rw------- 1 boinc boinc 933863483 Nov 28 13:33 shared/HITS.pool.root.1
[2025-11-28 13:34:49]  *** Contents of shared directory: ***
[2025-11-28 13:34:49] total 1320264
[2025-11-28 13:34:49] -rw-r--r-- 2 boinc boinc 412301883 Nov 28 05:42 ATLAS.root_0
[2025-11-28 13:34:49] -rw-r--r-- 2 boinc boinc    590101 Nov 28 05:42 input.tar.gz
[2025-11-28 13:34:49] -rw-r--r-- 2 boinc boinc     15847 Nov 28 05:42 start_atlas.sh
[2025-11-28 13:34:49] -rw------- 1 boinc boinc 933863483 Nov 28 13:33 HITS.pool.root.1
[2025-11-28 13:34:49] -rw------- 1 boinc boinc   5160960 Nov 28 13:34 result.tar.gz
13:34:51 (1889288): run_atlas exited; CPU time 83540.944428
13:34:51 (1889288): called boinc_finish(0)

</stderr_txt>
]]>

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