Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:11:14 (3864970): wrapper (7.7.26015): starting
02:11:14 (3864970): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 02:11:14] Arguments: --nthreads 8
[2025-11-23 02:11:14] Threads: 8
[2025-11-23 02:11:14] Checking for CVMFS
[2025-11-23 02:11:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 02:11:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 02:11:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 02:11:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 02:11:15] 2.13.3.0 9955 25368 310332 153200 3 100 31879061 32935936 23911 16776704 0 154127400 99.802 79193316 33286 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 02:11:15] CVMFS is ok
[2025-11-23 02:11:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 02:11:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 02:11:15] Further information can be found at the LHC@home message board.
[2025-11-23 02:11:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 02:11:15] Checking for apptainer binary...
[2025-11-23 02:11:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 02:11:15] Running /usr/bin/apptainer --version
[2025-11-23 02:11:15] apptainer version 1.4.4-1.el9
[2025-11-23 02:11:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 02:11:16] c-5-1.aglt2.org
[2025-11-23 02:11:16] apptainer works
[2025-11-23 02:11:16] Set ATHENA_PROC_NUMBER=8
[2025-11-23 02:11:16] Set ATHENA_CORE_NUMBER=8
[2025-11-23 02:11:16] Starting ATLAS job with PandaID=6893889439
[2025-11-23 02:11:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 09:35:53]  *** The last 200 lines of the pilot log: ***
[2025-11-24 09:35:53] 2025-11-24 14:34:50,064 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 09:35:53] 2025-11-24 14:34:50,830 | INFO     | time since job start (112960s) is within the limit (172800.0s)
[2025-11-24 09:35:53] 2025-11-24 14:34:52,569 | INFO     | monitor loop #6179: job 0:6893889439 is in state 'finished'
[2025-11-24 09:35:53] 2025-11-24 14:34:52,569 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 09:35:53] 2025-11-24 14:34:52,839 | INFO     | time since job start (112962s) is within the limit (172800.0s)
[2025-11-24 09:35:53] 2025-11-24 14:34:55,127 | INFO     | monitor loop #6180: job 0:6893889439 is in state 'finished'
[2025-11-24 09:35:53] 2025-11-24 14:34:55,128 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 09:35:53] 2025-11-24 14:34:55,305 | INFO     | PID=3874862 has CPU usage=11.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-24 09:35:53] 2025-11-24 14:34:55,305 | INFO     | .. there are 41 such processes running
[2025-11-24 09:35:53] 2025-11-24 14:34:55,963 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 09:35:53] 2025-11-24 14:34:55,974 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.035975
[2025-11-24 09:35:53] 2025-11-24 14:34:55,990 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893889439/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 09:35:53] 2025-11-24 14:34:55,995 | INFO     | extracted standard info from prmon json
[2025-11-24 09:35:53] 2025-11-24 14:34:55,995 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 09:35:53] 2025-11-24 14:34:55,995 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 09:35:53] 2025-11-24 14:34:56,061 | INFO     | fitting pss+swap vs Time
[2025-11-24 09:35:53] 2025-11-24 14:34:56,068 | INFO     | sum of square deviations: 1963340419345.9697
[2025-11-24 09:35:53] 2025-11-24 14:34:56,314 | INFO     | time since job start (112966s) is within the limit (172800.0s)
[2025-11-24 09:35:53] 2025-11-24 14:34:56,355 | INFO     | sum of deviations: 7443577814614.159
[2025-11-24 09:35:53] 2025-11-24 14:34:56,355 | INFO     | mean x: 1763938446.9956756
[2025-11-24 09:35:53] 2025-11-24 14:34:56,355 | INFO     | mean y: 2963854.5216216217
[2025-11-24 09:35:53] 2025-11-24 14:34:56,356 | INFO     | intersect: -6684624788.2955265
[2025-11-24 09:35:53] 2025-11-24 14:34:56,358 | INFO     | chi2: 14.687406051747256
[2025-11-24 09:35:53] 2025-11-24 14:34:56,373 | INFO     | sum of square deviations: 1947465911227.2378
[2025-11-24 09:35:53] 2025-11-24 14:34:56,609 | INFO     | sum of deviations: 8062868278753.503
[2025-11-24 09:35:53] 2025-11-24 14:34:56,618 | INFO     | mean x: 1763938294.502439
[2025-11-24 09:35:53] 2025-11-24 14:34:56,618 | INFO     | mean y: 2969802.7772357725
[2025-11-24 09:35:53] 2025-11-24 14:34:56,618 | INFO     | intersect: -7300060272.57834
[2025-11-24 09:35:53] 2025-11-24 14:34:56,621 | INFO     | chi2: 11.67941149433967
[2025-11-24 09:35:53] 2025-11-24 14:34:56,621 | INFO     | current chi2=11.67941149433967 (change=20.480093944497074 %)
[2025-11-24 09:35:53] 2025-11-24 14:34:56,621 | INFO     | right removable region: 1844
[2025-11-24 09:35:53] 2025-11-24 14:34:56,628 | INFO     | sum of square deviations: 1947463094857.239
[2025-11-24 09:35:53] 2025-11-24 14:34:56,751 | INFO     | sum of deviations: 6692890854241.944
[2025-11-24 09:35:53] 2025-11-24 14:34:56,752 | INFO     | mean x: 1763938599.502439
[2025-11-24 09:35:53] 2025-11-24 14:34:56,752 | INFO     | mean y: 2971064.454200542
[2025-11-24 09:35:53] 2025-11-24 14:34:56,752 | INFO     | intersect: -6059196969.040503
[2025-11-24 09:35:53] 2025-11-24 14:34:56,754 | INFO     | chi2: 10.722926428059882
[2025-11-24 09:35:53] 2025-11-24 14:34:56,754 | INFO     | current chi2=10.722926428059882 (change=26.992374349286465 %)
[2025-11-24 09:35:53] 2025-11-24 14:34:56,757 | INFO     | sum of square deviations: 1931671585930.839
[2025-11-24 09:35:53] 2025-11-24 14:34:56,855 | INFO     | sum of deviations: 6182363484045.149
[2025-11-24 09:35:53] 2025-11-24 14:34:56,855 | INFO     | mean x: 1763938752.0092392
[2025-11-24 09:35:53] 2025-11-24 14:34:56,856 | INFO     | mean y: 2975993.520652174
[2025-11-24 09:35:53] 2025-11-24 14:34:56,856 | INFO     | intersect: -5642554337.795483
[2025-11-24 09:35:53] 2025-11-24 14:34:56,858 | INFO     | chi2: 8.983189594767568
[2025-11-24 09:35:53] 2025-11-24 14:34:56,858 | INFO     | current chi2=8.983189594767568 (change=16.224459292565413 %)
[2025-11-24 09:35:53] 2025-11-24 14:34:56,859 | INFO     | left removable region: 20
[2025-11-24 09:35:53] 2025-11-24 14:34:56,861 | INFO     | sum of square deviations: 1881718573394.3284
[2025-11-24 09:35:53] 2025-11-24 14:34:56,942 | INFO     | sum of deviations: 6651726869527.987
[2025-11-24 09:35:53] 2025-11-24 14:34:56,942 | INFO     | mean x: 1763938874.0191886
[2025-11-24 09:35:53] 2025-11-24 14:34:56,942 | INFO     | mean y: 2985759.4572368423
[2025-11-24 09:35:53] 2025-11-24 14:34:56,943 | INFO     | intersect: -6232399154.32051
[2025-11-24 09:35:53] 2025-11-24 14:34:56,945 | INFO     | chi2: 5.323172198876422
[2025-11-24 09:35:53] 2025-11-24 14:34:56,945 | INFO     | current memory leak: 3.53 B/s (using 1824 data points, chi2=5.32)
[2025-11-24 09:35:53] 2025-11-24 14:34:56,947 | INFO     | could have reported an average CPU frequency of 2600 MHz (64 samples)
[2025-11-24 09:35:53] 2025-11-24 14:34:56,947 | INFO     | ..............................
[2025-11-24 09:35:53] 2025-11-24 14:34:56,947 | INFO     | . Timing measurements:
[2025-11-24 09:35:53] 2025-11-24 14:34:56,947 | INFO     | . get job = 0 s
[2025-11-24 09:35:53] 2025-11-24 14:34:56,948 | INFO     | . initial setup = 6 s
[2025-11-24 09:35:53] 2025-11-24 14:34:56,948 | INFO     | . payload setup = 32 s
[2025-11-24 09:35:53] 2025-11-24 14:34:56,948 | INFO     | . stage-in = 0 s
[2025-11-24 09:35:53] 2025-11-24 14:34:56,948 | INFO     | . payload execution = 112844 s
[2025-11-24 09:35:53] 2025-11-24 14:34:56,948 | INFO     | . stage-out = 6 s
[2025-11-24 09:35:53] 2025-11-24 14:34:56,948 | INFO     | . log creation = 2 s
[2025-11-24 09:35:53] 2025-11-24 14:34:56,948 | INFO     | ..............................
[2025-11-24 09:35:53] 2025-11-24 14:34:57,086 | INFO     | 
[2025-11-24 09:35:53] 2025-11-24 14:34:57,086 | INFO     | job summary report
[2025-11-24 09:35:53] 2025-11-24 14:34:57,086 | INFO     | --------------------------------------------------
[2025-11-24 09:35:53] 2025-11-24 14:34:57,086 | INFO     | PanDA job id: 6893889439
[2025-11-24 09:35:53] 2025-11-24 14:34:57,086 | INFO     | task id: 47523449
[2025-11-24 09:35:53] 2025-11-24 14:34:57,086 | INFO     | errors: (none)
[2025-11-24 09:35:53] 2025-11-24 14:34:57,087 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 09:35:53] 2025-11-24 14:34:57,087 | INFO     | pilot state: finished 
[2025-11-24 09:35:53] 2025-11-24 14:34:57,087 | INFO     | transexitcode: 0
[2025-11-24 09:35:53] 2025-11-24 14:34:57,087 | INFO     | exeerrorcode: 0
[2025-11-24 09:35:53] 2025-11-24 14:34:57,087 | INFO     | exeerrordiag: 
[2025-11-24 09:35:53] 2025-11-24 14:34:57,087 | INFO     | exitcode: 0
[2025-11-24 09:35:53] 2025-11-24 14:34:57,087 | INFO     | exitmsg: OK
[2025-11-24 09:35:53] 2025-11-24 14:34:57,087 | INFO     | cpuconsumptiontime: 308715 s
[2025-11-24 09:35:53] 2025-11-24 14:34:57,087 | INFO     | nevents: 1000
[2025-11-24 09:35:53] 2025-11-24 14:34:57,087 | INFO     | neventsw: 0
[2025-11-24 09:35:53] 2025-11-24 14:34:57,087 | INFO     | pid: 3882242
[2025-11-24 09:35:53] 2025-11-24 14:34:57,087 | INFO     | pgrp: 3882242
[2025-11-24 09:35:53] 2025-11-24 14:34:57,088 | INFO     | corecount: 8
[2025-11-24 09:35:53] 2025-11-24 14:34:57,088 | INFO     | event service: False
[2025-11-24 09:35:53] 2025-11-24 14:34:57,088 | INFO     | sizes: {0: 2298629, 1: 2298629, 2: 2298856, 13: 2298856, 25: 2298912, 34: 2299202, 36: 2299358, 112881: 2374950, 112888: 2384791, 112909: 2384981}
[2025-11-24 09:35:53] 2025-11-24 14:34:57,088 | INFO     | --------------------------------------------------
[2025-11-24 09:35:53] 2025-11-24 14:34:57,088 | INFO     | 
[2025-11-24 09:35:53] 2025-11-24 14:34:57,088 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 09:35:53] 2025-11-24 14:34:57,294 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 09:35:53] 2025-11-24 14:34:57,295 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 09:35:53] 2025-11-24 14:34:57,295 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 09:35:53] 2025-11-24 14:34:57,295 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 09:35:53] 2025-11-24 14:34:57,295 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 09:35:53] 2025-11-24 14:34:57,295 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 09:35:53] 2025-11-24 14:34:57,295 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 09:35:53] 2025-11-24 14:34:57,296 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 09:35:53] 2025-11-24 14:34:57,296 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 09:35:53] 2025-11-24 14:34:57,296 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 09:35:53] 2025-11-24 14:34:57,296 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 09:35:53] 2025-11-24 14:34:57,296 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 09:35:53] 2025-11-24 14:34:57,296 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 09:35:53] 2025-11-24 14:34:57,297 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 09:35:53] 2025-11-24 14:34:57,297 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 09:35:53] 2025-11-24 14:34:57,297 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 09:35:53] 2025-11-24 14:34:57,297 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 09:35:53] 2025-11-24 14:34:57,297 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 09:35:53] 2025-11-24 14:34:57,297 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 09:35:53] 2025-11-24 14:34:57,308 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 09:35:53] 2025-11-24 14:34:57,308 | INFO     | job 6893889439 has completed (purged errors)
[2025-11-24 09:35:53] 2025-11-24 14:34:57,308 | INFO     | overall cleanup function is called
[2025-11-24 09:35:53] 2025-11-24 14:34:58,348 | INFO     | --- collectZombieJob: --- 10, [3882242]
[2025-11-24 09:35:53] 2025-11-24 14:34:58,348 | INFO     | zombie collector waiting for pid 3882242
[2025-11-24 09:35:53] 2025-11-24 14:34:58,349 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 09:35:53] 2025-11-24 14:34:58,349 | INFO     | collected zombie processes
[2025-11-24 09:35:53] 2025-11-24 14:34:58,349 | INFO     | will attempt to kill all subprocesses of pid=3882242
[2025-11-24 09:35:53] 2025-11-24 14:34:59,600 | INFO     | process IDs to be killed: [3882242] (in reverse order)
[2025-11-24 09:35:53] 2025-11-24 14:35:00,070 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 09:35:53] 2025-11-24 14:35:00,070 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 09:35:53] 2025-11-24 14:35:00,118 | INFO     | did not find any defunct processes belonging to 3882242
[2025-11-24 09:35:53] 2025-11-24 14:35:00,165 | INFO     | did not find any defunct processes belonging to 3882242
[2025-11-24 09:35:53] 2025-11-24 14:35:00,173 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 09:35:53] 2025-11-24 14:35:00,173 | INFO     | ready for new job
[2025-11-24 09:35:53] 2025-11-24 14:35:00,173 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 09:35:53] 2025-11-24 14:35:00,190 | INFO     | ***************************************
[2025-11-24 09:35:53] 2025-11-24 14:35:00,190 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 09:35:53] 2025-11-24 14:35:00,190 | INFO     | ***************************************
[2025-11-24 09:35:53] 2025-11-24 14:35:00,190 | INFO     | 
[2025-11-24 09:35:53] 2025-11-24 14:35:00,192 | INFO     | architecture information:
[2025-11-24 09:35:53] 2025-11-24 14:35:00,205 | INFO     | executing command: cat /etc/os-release
[2025-11-24 09:35:53] 2025-11-24 14:35:00,280 | INFO     | cat /etc/os-release:
[2025-11-24 09:35:53] NAME="CentOS Linux"
[2025-11-24 09:35:53] VERSION="7 (Core)"
[2025-11-24 09:35:53] ID="centos"
[2025-11-24 09:35:53] ID_LIKE="rhel fedora"
[2025-11-24 09:35:53] VERSION_ID="7"
[2025-11-24 09:35:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 09:35:53] ANSI_COLOR="0;31"
[2025-11-24 09:35:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 09:35:53] HOME_URL="https://www.centos.org/"
[2025-11-24 09:35:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 09:35:53] 
[2025-11-24 09:35:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 09:35:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 09:35:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 09:35:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 09:35:53] 
[2025-11-24 09:35:53] 2025-11-24 14:35:00,280 | INFO     | ***************************************
[2025-11-24 09:35:53] 2025-11-24 14:35:00,784 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 09:35:53] 2025-11-24 14:35:00,830 | INFO     | sufficient remaining disk space (72707211264 B)
[2025-11-24 09:35:53] 2025-11-24 14:35:00,831 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 09:35:53] 2025-11-24 14:35:00,831 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 09:35:53] 2025-11-24 14:35:00,831 | INFO     | update_server=False
[2025-11-24 09:35:53] 2025-11-24 14:35:00,831 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 09:35:53] 2025-11-24 14:35:00,831 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 09:35:53] 2025-11-24 14:35:00,924 | INFO     | all job control threads have been joined
[2025-11-24 09:35:53] 2025-11-24 14:35:00,967 | INFO     | all data control threads have been joined
[2025-11-24 09:35:53] 2025-11-24 14:35:01,203 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 09:35:53] 2025-11-24 14:35:01,203 | INFO     | aborting loop
[2025-11-24 09:35:53] 2025-11-24 14:35:01,487 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 09:35:53] 2025-11-24 14:35:01,840 | INFO     | [job] retrieve thread has finished
[2025-11-24 09:35:53] 2025-11-24 14:35:01,865 | INFO     | [data] copytool_in thread has finished
[2025-11-24 09:35:53] 2025-11-24 14:35:01,929 | INFO     | [job] control thread has finished
[2025-11-24 09:35:53] 2025-11-24 14:35:01,973 | INFO     | [data] control thread has finished
[2025-11-24 09:35:53] 2025-11-24 14:35:02,136 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 09:35:53] 2025-11-24 14:35:02,137 | INFO     | all payload control threads have been joined
[2025-11-24 09:35:53] 2025-11-24 14:35:02,209 | INFO     | [job] job monitor thread has finished
[2025-11-24 09:35:53] 2025-11-24 14:35:02,216 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 09:35:53] 2025-11-24 14:35:02,624 | INFO     | [payload] validate_post thread has finished
[2025-11-24 09:35:53] 2025-11-24 14:35:02,668 | INFO     | [payload] failed_post thread has finished
[2025-11-24 09:35:53] 2025-11-24 14:35:02,706 | INFO     | [job] validate thread has finished
[2025-11-24 09:35:53] 2025-11-24 14:35:02,999 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 09:35:53] 2025-11-24 14:35:03,028 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 09:35:53] 2025-11-24 14:35:03,142 | INFO     | [job] queue monitor thread has finished
[2025-11-24 09:35:53] 2025-11-24 14:35:03,143 | INFO     | [payload] control thread has finished
[2025-11-24 09:35:53] 2025-11-24 14:35:03,294 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 09:35:53] 2025-11-24 14:35:03,495 | INFO     | [data] copytool_out thread has finished
[2025-11-24 09:35:53] 2025-11-24 14:35:04,847 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 09:35:53] 2025-11-24 14:35:30,679 | INFO     | PID=3874862 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 09:35:53] 2025-11-24 14:35:30,679 | INFO     | .. there are 41 such processes running
[2025-11-24 09:35:53] 2025-11-24 14:35:30,693 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 09:35:53] 2025-11-24 14:35:30,694 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 09:35:53] 2025-11-24 14:35:30,694 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 09:35:53] 2025-11-24 14:35:46,125 | INFO     | [monitor] cgroup control has ended
[2025-11-24 09:35:53] 2025-11-24 14:35:47,399 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139734046885696)>', '<ExcThread(monitor, started 139733690717952)>']
[2025-11-24 09:35:53] 2025-11-24 14:35:47,821 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 09:35:53] 2025-11-24 14:35:47,821 | INFO     | [monitor] control thread has ended
[2025-11-24 09:35:53] 2025-11-24 14:35:52,427 | INFO     | all workflow threads have been joined
[2025-11-24 09:35:53] 2025-11-24 14:35:52,429 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 09:35:53] 2025-11-24 14:35:52,429 | INFO     | traces error code: 0
[2025-11-24 09:35:53] 2025-11-24 14:35:52,429 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 09:35:53] 2025-11-24 14:35:52,738 [wrapper] ==== pilot stdout END ====
[2025-11-24 09:35:53] 2025-11-24 14:35:52,762 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 09:35:53] 2025-11-24 14:35:52,780 [wrapper] pilotpid: 3874862
[2025-11-24 09:35:53] 2025-11-24 14:35:52,804 [wrapper] Pilot exit status: 0
[2025-11-24 09:35:53] 2025-11-24 14:35:52,880 [wrapper] pandaids: 6893889439
[2025-11-24 09:35:53] 2025-11-24 14:35:53,059 [wrapper] cleanup supervisor_pilot 1810034 3874863
[2025-11-24 09:35:53] 2025-11-24 14:35:53,062 [wrapper] Test setup, not cleaning
[2025-11-24 09:35:53] 2025-11-24 14:35:53,065 [wrapper] apfmon messages muted
[2025-11-24 09:35:53] 2025-11-24 14:35:53,067 [wrapper] ==== wrapper stdout END ====
[2025-11-24 09:35:53] 2025-11-24 14:35:53,070 [wrapper] ==== wrapper stderr END ====
[2025-11-24 09:35:53]  *** Error codes and diagnostics ***
[2025-11-24 09:35:53]     "exeErrorCode": 0,
[2025-11-24 09:35:53]     "exeErrorDiag": "",
[2025-11-24 09:35:53]     "pilotErrorCode": 0,
[2025-11-24 09:35:53]     "pilotErrorDiag": "",
[2025-11-24 09:35:53]  *** Listing of results directory ***
[2025-11-24 09:35:53] total 1347420
[2025-11-24 09:35:53] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 18:11 pilot3.tar.gz
[2025-11-24 09:35:53] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 18:50 queuedata.json
[2025-11-24 09:35:53] -rwx------. 1 boincer umatlas     36292 Nov 20 18:50 runpilot2-wrapper.sh
[2025-11-24 09:35:53] -rw-r--r--. 1 boincer umatlas       100 Nov 23 02:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 09:35:53] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 02:11 run_atlas
[2025-11-24 09:35:53] -rw-r--r--. 1 boincer umatlas       105 Nov 23 02:11 job.xml
[2025-11-24 09:35:53] -rw-r--r--. 2 boincer umatlas 411353790 Nov 23 02:11 EVNT.47493127._000992.pool.root.1
[2025-11-24 09:35:53] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 02:11 shared
[2025-11-24 09:35:53] -rw-r--r--. 2 boincer umatlas    590106 Nov 23 02:11 input.tar.gz
[2025-11-24 09:35:53] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 02:11 start_atlas.sh
[2025-11-24 09:35:53] -rw-r--r--. 1 boincer umatlas         0 Nov 23 02:11 boinc_lockfile
[2025-11-24 09:35:53] -rw-r--r--. 1 boincer umatlas      2782 Nov 23 02:11 pandaJob.out
[2025-11-24 09:35:53] -rw-------. 1 boincer umatlas        57 Nov 23 02:11 setup.sh.local
[2025-11-24 09:35:53] -rw-------. 1 boincer umatlas    989784 Nov 23 02:12 agis_schedconf.cvmfs.json
[2025-11-24 09:35:53] drwx------. 5 boincer umatlas      4096 Nov 23 02:12 pilot3
[2025-11-24 09:35:53] -rw-r--r--. 1 boincer umatlas       534 Nov 24 09:09 boinc_task_state.xml
[2025-11-24 09:35:53] -rw-r--r--. 1 boincer umatlas      6660 Nov 24 09:27 init_data.xml
[2025-11-24 09:35:53] -rw-------. 1 boincer umatlas 932207955 Nov 24 09:33 HITS.47523449._009911.pool.root.1
[2025-11-24 09:35:53] -rw-------. 1 boincer umatlas      1072 Nov 24 09:34 memory_monitor_summary.json
[2025-11-24 09:35:53] -rw-------. 1 boincer umatlas   1516227 Nov 24 09:34 agis_ddmendpoints.agis.ALL.json
[2025-11-24 09:35:53] -rw-------. 1 boincer umatlas   2688688 Nov 24 09:34 log.47523449._009911.job.log.tgz.1
[2025-11-24 09:35:53] -rw-------. 1 boincer umatlas      8648 Nov 24 09:34 heartbeat.json
[2025-11-24 09:35:53] -rw-------. 1 boincer umatlas        95 Nov 24 09:35 pilot_heartbeat.json
[2025-11-24 09:35:53] -rw-r--r--. 1 boincer umatlas        30 Nov 24 09:35 wrapper_checkpoint.txt
[2025-11-24 09:35:53] -rw-------. 1 boincer umatlas      4824 Nov 24 09:35 pilotlog.txt
[2025-11-24 09:35:53] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 09:35 boinc_mmap_file
[2025-11-24 09:35:53] -rw-------. 1 boincer umatlas  13450335 Nov 24 09:35 log.47523449._009911.job.log.1
[2025-11-24 09:35:53] -rw-------. 1 boincer umatlas       353 Nov 24 09:35 output.list
[2025-11-24 09:35:53] -rw-r--r--. 1 boincer umatlas       620 Nov 24 09:35 runtime_log
[2025-11-24 09:35:53] -rw-------. 1 boincer umatlas  16158720 Nov 24 09:35 result.tar.gz
[2025-11-24 09:35:53] -rw-r--r--. 1 boincer umatlas      9329 Nov 24 09:35 runtime_log.err
[2025-11-24 09:35:53] -rw-------. 1 boincer umatlas       666 Nov 24 09:35 8A2MDmIbTg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmcAHKDmyRwoNn.diag
[2025-11-24 09:35:53] -rw-r--r--. 1 boincer umatlas     21656 Nov 24 09:35 stderr.txt
[2025-11-24 09:35:53] HITS file was successfully produced:
[2025-11-24 09:35:53] -rw-------. 1 boincer umatlas 932207955 Nov 24 09:33 shared/HITS.pool.root.1
[2025-11-24 09:35:53]  *** Contents of shared directory: ***
[2025-11-24 09:35:53] total 1328460
[2025-11-24 09:35:53] -rw-r--r--. 2 boincer umatlas 411353790 Nov 23 02:11 ATLAS.root_0
[2025-11-24 09:35:53] -rw-r--r--. 2 boincer umatlas    590106 Nov 23 02:11 input.tar.gz
[2025-11-24 09:35:53] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 02:11 start_atlas.sh
[2025-11-24 09:35:53] -rw-------. 1 boincer umatlas 932207955 Nov 24 09:33 HITS.pool.root.1
[2025-11-24 09:35:53] -rw-------. 1 boincer umatlas  16158720 Nov 24 09:35 result.tar.gz
09:35:55 (3864970): run_atlas exited; CPU time 312312.298864
09:35:55 (3864970): called boinc_finish(0)

</stderr_txt>
]]>

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