Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:11 (1477980): wrapper (7.7.26015): starting
00:01:11 (1477980): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 00:01:11] Arguments: --nthreads 9
[2025-11-24 00:01:11] Threads: 9
[2025-11-24 00:01:11] Checking for CVMFS
[2025-11-24 00:01:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:01:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:01:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:01:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:01:13] 2.13.3.0 13693 26721 339936 153233 3 97 32025684 40960001 23508 16776704 0 73656476 99.608 75711169 36193 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 00:01:13] CVMFS is ok
[2025-11-24 00:01:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:01:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:01:14] Further information can be found at the LHC@home message board.
[2025-11-24 00:01:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:01:14] Checking for apptainer binary...
[2025-11-24 00:01:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:01:14] Running /usr/bin/apptainer --version
[2025-11-24 00:01:14] apptainer version 1.4.4-1.el9
[2025-11-24 00:01:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:01:14] c6-5-37-3.aglt2.org
[2025-11-24 00:01:14] apptainer works
[2025-11-24 00:01:14] Set ATHENA_PROC_NUMBER=9
[2025-11-24 00:01:14] Set ATHENA_CORE_NUMBER=9
[2025-11-24 00:01:15] Starting ATLAS job with PandaID=6895337346
[2025-11-24 00:01:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 14:23:31]  *** The last 200 lines of the pilot log: ***
[2025-11-24 14:23:31] 2025-11-24 19:21:51,724 | INFO     | time since job start (51565s) is within the limit (172800.0s)
[2025-11-24 14:23:31] 2025-11-24 19:21:52,358 | INFO     | monitor loop #3077: job 0:6895337346 is in state 'finished'
[2025-11-24 14:23:31] 2025-11-24 19:21:52,358 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 14:23:31] 2025-11-24 19:21:53,587 | INFO     | PID=1486426 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 14:23:31] 2025-11-24 19:21:53,587 | INFO     | .. there are 31 such processes running
[2025-11-24 14:23:31] 2025-11-24 19:21:54,588 | INFO     | time since job start (51568s) is within the limit (172800.0s)
[2025-11-24 14:23:31] 2025-11-24 19:21:54,877 | INFO     | monitor loop #3078: job 0:6895337346 is in state 'finished'
[2025-11-24 14:23:31] 2025-11-24 19:21:54,877 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 14:23:31] 2025-11-24 19:21:56,596 | INFO     | time since job start (51570s) is within the limit (172800.0s)
[2025-11-24 14:23:31] 2025-11-24 19:21:57,409 | INFO     | monitor loop #3079: job 0:6895337346 is in state 'finished'
[2025-11-24 14:23:31] 2025-11-24 19:21:57,414 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 14:23:31] 2025-11-24 19:21:58,603 | INFO     | time since job start (51572s) is within the limit (172800.0s)
[2025-11-24 14:23:31] 2025-11-24 19:21:59,952 | INFO     | monitor loop #3080: job 0:6895337346 is in state 'finished'
[2025-11-24 14:23:31] 2025-11-24 19:21:59,952 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 14:23:31] 2025-11-24 19:22:00,315 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 14:23:31] 2025-11-24 19:22:00,338 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3141.946910714287
[2025-11-24 14:23:31] 2025-11-24 19:22:00,433 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895337346/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 14:23:31] 2025-11-24 19:22:00,434 | INFO     | extracted standard info from prmon json
[2025-11-24 14:23:31] 2025-11-24 19:22:00,434 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 14:23:31] 2025-11-24 19:22:00,434 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 14:23:31] 2025-11-24 19:22:00,581 | INFO     | fitting pss+swap vs Time
[2025-11-24 14:23:31] 2025-11-24 19:22:00,583 | INFO     | sum of square deviations: 185086941650.87424
[2025-11-24 14:23:31] 2025-11-24 19:22:00,621 | INFO     | time since job start (51574s) is within the limit (172800.0s)
[2025-11-24 14:23:31] 2025-11-24 19:22:00,623 | INFO     | sum of deviations: 1909798834421.3079
[2025-11-24 14:23:31] 2025-11-24 19:22:00,623 | INFO     | mean x: 1763986341.456057
[2025-11-24 14:23:31] 2025-11-24 19:22:00,623 | INFO     | mean y: 3035871.9002375295
[2025-11-24 14:23:31] 2025-11-24 19:22:00,624 | INFO     | intersect: -18198459213.59583
[2025-11-24 14:23:31] 2025-11-24 19:22:00,624 | INFO     | chi2: 16.87628420173344
[2025-11-24 14:23:31] 2025-11-24 19:22:00,629 | INFO     | sum of square deviations: 181809419714.12906
[2025-11-24 14:23:31] 2025-11-24 19:22:00,664 | INFO     | sum of deviations: 2221093211028.549
[2025-11-24 14:23:31] 2025-11-24 19:22:00,664 | INFO     | mean x: 1763986188.967742
[2025-11-24 14:23:31] 2025-11-24 19:22:00,664 | INFO     | mean y: 3050352.05734767
[2025-11-24 14:23:31] 2025-11-24 19:22:00,664 | INFO     | intersect: -21546865789.938316
[2025-11-24 14:23:31] 2025-11-24 19:22:00,665 | INFO     | chi2: 13.195104366132897
[2025-11-24 14:23:31] 2025-11-24 19:22:00,665 | INFO     | current chi2=13.195104366132897 (change=21.812739057940448 %)
[2025-11-24 14:23:31] 2025-11-24 19:22:00,665 | INFO     | right removable region: 836
[2025-11-24 14:23:31] 2025-11-24 19:22:00,666 | INFO     | sum of square deviations: 181808415044.129
[2025-11-24 14:23:31] 2025-11-24 19:22:00,680 | INFO     | sum of deviations: 1569497569975.516
[2025-11-24 14:23:31] 2025-11-24 19:22:00,680 | INFO     | mean x: 1763986493.967742
[2025-11-24 14:23:31] 2025-11-24 19:22:00,680 | INFO     | mean y: 3051698.204301075
[2025-11-24 14:23:31] 2025-11-24 19:22:00,680 | INFO     | intersect: -15224915143.044529
[2025-11-24 14:23:31] 2025-11-24 19:22:00,681 | INFO     | chi2: 13.230363889192885
[2025-11-24 14:23:31] 2025-11-24 19:22:00,681 | INFO     | current chi2=13.230363889192885 (change=21.60380963580873 %)
[2025-11-24 14:23:31] 2025-11-24 19:22:00,681 | INFO     | left removable region: 10
[2025-11-24 14:23:31] 2025-11-24 19:22:00,682 | INFO     | sum of square deviations: 174733622102.45667
[2025-11-24 14:23:31] 2025-11-24 19:22:00,693 | INFO     | sum of deviations: 1736264685832.5222
[2025-11-24 14:23:31] 2025-11-24 19:22:00,694 | INFO     | mean x: 1763986463.492736
[2025-11-24 14:23:31] 2025-11-24 19:22:00,694 | INFO     | mean y: 3078886.9200968524
[2025-11-24 14:23:31] 2025-11-24 19:22:00,694 | INFO     | intersect: -17525015397.379505
[2025-11-24 14:23:31] 2025-11-24 19:22:00,695 | INFO     | chi2: 7.589769034578673
[2025-11-24 14:23:31] 2025-11-24 19:22:00,695 | INFO     | current memory leak: 9.94 B/s (using 826 data points, chi2=7.59)
[2025-11-24 14:23:31] 2025-11-24 19:22:00,696 | INFO     | could have reported an average CPU frequency of 3201 MHz (32 samples)
[2025-11-24 14:23:31] 2025-11-24 19:22:00,696 | INFO     | ..............................
[2025-11-24 14:23:31] 2025-11-24 19:22:00,696 | INFO     | . Timing measurements:
[2025-11-24 14:23:31] 2025-11-24 19:22:00,696 | INFO     | . get job = 0 s
[2025-11-24 14:23:31] 2025-11-24 19:22:00,696 | INFO     | . initial setup = 7 s
[2025-11-24 14:23:31] 2025-11-24 19:22:00,697 | INFO     | . payload setup = 44 s
[2025-11-24 14:23:31] 2025-11-24 19:22:00,697 | INFO     | . stage-in = 0 s
[2025-11-24 14:23:31] 2025-11-24 19:22:00,697 | INFO     | . payload execution = 51372 s
[2025-11-24 14:23:31] 2025-11-24 19:22:00,697 | INFO     | . stage-out = 43 s
[2025-11-24 14:23:31] 2025-11-24 19:22:00,697 | INFO     | . log creation = 4 s
[2025-11-24 14:23:31] 2025-11-24 19:22:00,697 | INFO     | ..............................
[2025-11-24 14:23:31] 2025-11-24 19:22:01,071 | INFO     | 
[2025-11-24 14:23:31] 2025-11-24 19:22:01,072 | INFO     | job summary report
[2025-11-24 14:23:31] 2025-11-24 19:22:01,072 | INFO     | --------------------------------------------------
[2025-11-24 14:23:31] 2025-11-24 19:22:01,072 | INFO     | PanDA job id: 6895337346
[2025-11-24 14:23:31] 2025-11-24 19:22:01,072 | INFO     | task id: 47556137
[2025-11-24 14:23:31] 2025-11-24 19:22:01,072 | INFO     | errors: (none)
[2025-11-24 14:23:31] 2025-11-24 19:22:01,072 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 14:23:31] 2025-11-24 19:22:01,072 | INFO     | pilot state: finished 
[2025-11-24 14:23:31] 2025-11-24 19:22:01,072 | INFO     | transexitcode: 0
[2025-11-24 14:23:31] 2025-11-24 19:22:01,072 | INFO     | exeerrorcode: 0
[2025-11-24 14:23:31] 2025-11-24 19:22:01,072 | INFO     | exeerrordiag: 
[2025-11-24 14:23:31] 2025-11-24 19:22:01,072 | INFO     | exitcode: 0
[2025-11-24 14:23:31] 2025-11-24 19:22:01,073 | INFO     | exitmsg: OK
[2025-11-24 14:23:31] 2025-11-24 19:22:01,073 | INFO     | cpuconsumptiontime: 222768 s
[2025-11-24 14:23:31] 2025-11-24 19:22:01,073 | INFO     | nevents: 1000
[2025-11-24 14:23:31] 2025-11-24 19:22:01,073 | INFO     | neventsw: 0
[2025-11-24 14:23:31] 2025-11-24 19:22:01,073 | INFO     | pid: 1509922
[2025-11-24 14:23:31] 2025-11-24 19:22:01,073 | INFO     | pgrp: 1509922
[2025-11-24 14:23:31] 2025-11-24 19:22:01,073 | INFO     | corecount: 9
[2025-11-24 14:23:31] 2025-11-24 19:22:01,073 | INFO     | event service: False
[2025-11-24 14:23:31] 2025-11-24 19:22:01,073 | INFO     | sizes: {0: 2298529, 1: 2298613, 2: 2298613, 3: 2298784, 4: 2298812, 15: 2298840, 27: 2298996, 35: 2299286, 39: 2299314, 51421: 2347932, 51465: 2357963, 51468: 2358
[2025-11-24 14:23:31] 2025-11-24 19:22:01,073 | INFO     | --------------------------------------------------
[2025-11-24 14:23:31] 2025-11-24 19:22:01,073 | INFO     | 
[2025-11-24 14:23:31] 2025-11-24 19:22:01,074 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 14:23:31] 2025-11-24 19:22:01,129 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 14:23:31] 2025-11-24 19:22:01,129 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 14:23:31] 2025-11-24 19:22:01,129 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 14:23:31] 2025-11-24 19:22:01,129 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 14:23:31] 2025-11-24 19:22:01,129 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 14:23:31] 2025-11-24 19:22:01,129 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 14:23:31] 2025-11-24 19:22:01,130 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 14:23:31] 2025-11-24 19:22:01,130 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 14:23:31] 2025-11-24 19:22:01,130 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 14:23:31] 2025-11-24 19:22:01,130 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 14:23:31] 2025-11-24 19:22:01,130 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 14:23:31] 2025-11-24 19:22:01,130 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 14:23:31] 2025-11-24 19:22:01,130 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 14:23:31] 2025-11-24 19:22:01,130 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 14:23:31] 2025-11-24 19:22:01,130 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 14:23:31] 2025-11-24 19:22:01,130 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 14:23:31] 2025-11-24 19:22:01,130 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 14:23:31] 2025-11-24 19:22:01,130 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 14:23:31] 2025-11-24 19:22:01,131 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 14:23:31] 2025-11-24 19:22:01,131 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 14:23:31] 2025-11-24 19:22:01,131 | INFO     | job 6895337346 has completed (purged errors)
[2025-11-24 14:23:31] 2025-11-24 19:22:01,131 | INFO     | overall cleanup function is called
[2025-11-24 14:23:31] 2025-11-24 19:22:02,162 | INFO     | --- collectZombieJob: --- 10, [1509922]
[2025-11-24 14:23:31] 2025-11-24 19:22:02,162 | INFO     | zombie collector waiting for pid 1509922
[2025-11-24 14:23:31] 2025-11-24 19:22:02,162 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 14:23:31] 2025-11-24 19:22:02,163 | INFO     | collected zombie processes
[2025-11-24 14:23:31] 2025-11-24 19:22:02,163 | INFO     | will attempt to kill all subprocesses of pid=1509922
[2025-11-24 14:23:31] 2025-11-24 19:22:03,809 | INFO     | process IDs to be killed: [1509922] (in reverse order)
[2025-11-24 14:23:31] 2025-11-24 19:22:04,033 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 14:23:31] 2025-11-24 19:22:04,034 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 14:23:31] 2025-11-24 19:22:04,056 | INFO     | did not find any defunct processes belonging to 1509922
[2025-11-24 14:23:31] 2025-11-24 19:22:04,081 | INFO     | did not find any defunct processes belonging to 1509922
[2025-11-24 14:23:31] 2025-11-24 19:22:04,087 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 14:23:31] 2025-11-24 19:22:04,087 | INFO     | ready for new job
[2025-11-24 14:23:31] 2025-11-24 19:22:04,088 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 14:23:31] 2025-11-24 19:22:04,096 | INFO     | ***************************************
[2025-11-24 14:23:31] 2025-11-24 19:22:04,096 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 14:23:31] 2025-11-24 19:22:04,096 | INFO     | ***************************************
[2025-11-24 14:23:31] 2025-11-24 19:22:04,096 | INFO     | 
[2025-11-24 14:23:31] 2025-11-24 19:22:04,103 | INFO     | architecture information:
[2025-11-24 14:23:31] 2025-11-24 19:22:04,104 | INFO     | executing command: cat /etc/os-release
[2025-11-24 14:23:31] 2025-11-24 19:22:04,142 | INFO     | cat /etc/os-release:
[2025-11-24 14:23:31] NAME="CentOS Linux"
[2025-11-24 14:23:31] VERSION="7 (Core)"
[2025-11-24 14:23:31] ID="centos"
[2025-11-24 14:23:31] ID_LIKE="rhel fedora"
[2025-11-24 14:23:31] VERSION_ID="7"
[2025-11-24 14:23:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 14:23:31] ANSI_COLOR="0;31"
[2025-11-24 14:23:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 14:23:31] HOME_URL="https://www.centos.org/"
[2025-11-24 14:23:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 14:23:31] 
[2025-11-24 14:23:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 14:23:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 14:23:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 14:23:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 14:23:31] 
[2025-11-24 14:23:31] 2025-11-24 19:22:04,142 | INFO     | ***************************************
[2025-11-24 14:23:31] 2025-11-24 19:22:04,646 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 14:23:31] 2025-11-24 19:22:04,713 | INFO     | sufficient remaining disk space (70370983936 B)
[2025-11-24 14:23:31] 2025-11-24 19:22:04,713 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 14:23:31] 2025-11-24 19:22:04,713 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 14:23:31] 2025-11-24 19:22:04,713 | INFO     | update_server=False
[2025-11-24 14:23:31] 2025-11-24 19:22:04,713 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 14:23:31] 2025-11-24 19:22:04,771 | INFO     | all data control threads have been joined
[2025-11-24 14:23:31] 2025-11-24 19:22:05,029 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 14:23:31] 2025-11-24 19:22:05,029 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 14:23:31] 2025-11-24 19:22:05,030 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 14:23:31] 2025-11-24 19:22:05,030 | INFO     | will abort loop
[2025-11-24 14:23:31] 2025-11-24 19:22:05,038 | INFO     | all job control threads have been joined
[2025-11-24 14:23:31] 2025-11-24 19:22:05,525 | INFO     | all payload control threads have been joined
[2025-11-24 14:23:31] 2025-11-24 19:22:05,719 | INFO     | [job] retrieve thread has finished
[2025-11-24 14:23:31] 2025-11-24 19:22:05,779 | INFO     | [data] control thread has finished
[2025-11-24 14:23:31] 2025-11-24 19:22:05,989 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 14:23:31] 2025-11-24 19:22:06,040 | INFO     | [job] job monitor thread has finished
[2025-11-24 14:23:31] 2025-11-24 19:22:06,060 | INFO     | [job] control thread has finished
[2025-11-24 14:23:31] 2025-11-24 19:22:06,157 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 14:23:31] 2025-11-24 19:22:06,157 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 14:23:31] 2025-11-24 19:22:06,158 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 14:23:31] 2025-11-24 19:22:06,159 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 14:23:31] 2025-11-24 19:22:06,378 | INFO     | [payload] validate_post thread has finished
[2025-11-24 14:23:31] 2025-11-24 19:22:06,527 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 14:23:31] 2025-11-24 19:22:06,528 | INFO     | [data] copytool_in thread has finished
[2025-11-24 14:23:31] 2025-11-24 19:22:06,532 | INFO     | [payload] control thread has finished
[2025-11-24 14:23:31] 2025-11-24 19:22:06,592 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 14:23:31] 2025-11-24 19:22:06,752 | INFO     | [payload] failed_post thread has finished
[2025-11-24 14:23:31] 2025-11-24 19:22:06,999 | INFO     | [job] validate thread has finished
[2025-11-24 14:23:31] 2025-11-24 19:22:07,162 | INFO     | [job] queue monitor thread has finished
[2025-11-24 14:23:31] 2025-11-24 19:22:08,187 | INFO     | [data] copytool_out thread has finished
[2025-11-24 14:23:31] 2025-11-24 19:22:10,048 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 14:23:31] 2025-11-24 19:22:34,887 | INFO     | PID=1486426 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 14:23:31] 2025-11-24 19:22:34,887 | INFO     | .. there are 31 such processes running
[2025-11-24 14:23:31] 2025-11-24 19:22:34,888 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 14:23:31] 2025-11-24 19:22:34,888 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 14:23:31] 2025-11-24 19:22:34,888 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 14:23:31] 2025-11-24 19:23:01,336 | INFO     | [monitor] cgroup control has ended
[2025-11-24 14:23:31] 2025-11-24 19:23:02,956 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139999334987584)>', '<ExcThread(monitor, started 139998980450048)>']
[2025-11-24 14:23:31] 2025-11-24 19:23:03,095 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 14:23:31] 2025-11-24 19:23:03,095 | INFO     | [monitor] control thread has ended
[2025-11-24 14:23:31] 2025-11-24 19:23:08,021 | INFO     | all workflow threads have been joined
[2025-11-24 14:23:31] 2025-11-24 19:23:08,021 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 14:23:31] 2025-11-24 19:23:08,022 | INFO     | traces error code: 0
[2025-11-24 14:23:31] 2025-11-24 19:23:08,022 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 14:23:31] 2025-11-24 19:23:10,770 [wrapper] ==== pilot stdout END ====
[2025-11-24 14:23:31] 2025-11-24 19:23:10,792 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 14:23:31] 2025-11-24 19:23:10,870 [wrapper] pilotpid: 1486426
[2025-11-24 14:23:31] 2025-11-24 19:23:10,884 [wrapper] Pilot exit status: 0
[2025-11-24 14:23:31] 2025-11-24 19:23:10,952 [wrapper] pandaids: 6895337346
[2025-11-24 14:23:31] 2025-11-24 19:23:11,455 [wrapper] cleanup supervisor_pilot 3929407 1486427
[2025-11-24 14:23:31] 2025-11-24 19:23:11,485 [wrapper] Test setup, not cleaning
[2025-11-24 14:23:31] 2025-11-24 19:23:11,500 [wrapper] apfmon messages muted
[2025-11-24 14:23:31] 2025-11-24 19:23:11,526 [wrapper] ==== wrapper stdout END ====
[2025-11-24 14:23:31] 2025-11-24 19:23:11,544 [wrapper] ==== wrapper stderr END ====
[2025-11-24 14:23:31]  *** Error codes and diagnostics ***
[2025-11-24 14:23:31]     "exeErrorCode": 0,
[2025-11-24 14:23:31]     "exeErrorDiag": "",
[2025-11-24 14:23:31]     "pilotErrorCode": 0,
[2025-11-24 14:23:31]     "pilotErrorDiag": "",
[2025-11-24 14:23:31]  *** Listing of results directory ***
[2025-11-24 14:23:31] total 1320680
[2025-11-24 14:23:31] -rwx------. 1 boincer umatlas     36292 Nov 22 02:15 runpilot2-wrapper.sh
[2025-11-24 14:23:31] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 02:15 pilot3.tar.gz
[2025-11-24 14:23:31] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 02:15 queuedata.json
[2025-11-24 14:23:31] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 14:23:31] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:01 run_atlas
[2025-11-24 14:23:31] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:01 job.xml
[2025-11-24 14:23:31] -rw-r--r--. 2 boincer umatlas 408873487 Nov 24 00:01 EVNT.47483658._000299.pool.root.1
[2025-11-24 14:23:31] -rw-r--r--. 2 boincer umatlas    590094 Nov 24 00:01 input.tar.gz
[2025-11-24 14:23:31] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:01 shared
[2025-11-24 14:23:31] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:01 start_atlas.sh
[2025-11-24 14:23:31] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:01 boinc_lockfile
[2025-11-24 14:23:31] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 00:01 pandaJob.out
[2025-11-24 14:23:31] -rw-------. 1 boincer umatlas        57 Nov 24 00:01 setup.sh.local
[2025-11-24 14:23:31] -rw-------. 1 boincer umatlas    989786 Nov 24 00:02 agis_schedconf.cvmfs.json
[2025-11-24 14:23:31] drwx------. 5 boincer umatlas      4096 Nov 24 00:02 pilot3
[2025-11-24 14:23:31] -rw-r--r--. 1 boincer umatlas       533 Nov 24 13:57 boinc_task_state.xml
[2025-11-24 14:23:31] -rw-r--r--. 1 boincer umatlas      6845 Nov 24 14:18 init_data.xml
[2025-11-24 14:23:31] -rw-------. 1 boincer umatlas 922323396 Nov 24 14:18 HITS.47556137._002958.pool.root.1
[2025-11-24 14:23:31] -rw-------. 1 boincer umatlas      1068 Nov 24 14:20 memory_monitor_summary.json
[2025-11-24 14:23:31] -rw-------. 1 boincer umatlas   1516227 Nov 24 14:20 agis_ddmendpoints.agis.ALL.json
[2025-11-24 14:23:31] -rw-------. 1 boincer umatlas   2147071 Nov 24 14:21 log.47556137._002958.job.log.tgz.1
[2025-11-24 14:23:31] -rw-------. 1 boincer umatlas      8652 Nov 24 14:22 heartbeat.json
[2025-11-24 14:23:31] -rw-------. 1 boincer umatlas        95 Nov 24 14:22 pilot_heartbeat.json
[2025-11-24 14:23:31] -rw-------. 1 boincer umatlas      5010 Nov 24 14:23 pilotlog.txt
[2025-11-24 14:23:31] -rw-------. 1 boincer umatlas   6490244 Nov 24 14:23 log.47556137._002958.job.log.1
[2025-11-24 14:23:31] -rw-------. 1 boincer umatlas       353 Nov 24 14:23 output.list
[2025-11-24 14:23:31] -rw-r--r--. 1 boincer umatlas       620 Nov 24 14:23 runtime_log
[2025-11-24 14:23:31] -rw-------. 1 boincer umatlas   8652800 Nov 24 14:23 result.tar.gz
[2025-11-24 14:23:31] -rw-------. 1 boincer umatlas       665 Nov 24 14:23 XzKNDmW1wg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmp0HKDmzFPfkn.diag
[2025-11-24 14:23:31] -rw-r--r--. 1 boincer umatlas      9348 Nov 24 14:23 runtime_log.err
[2025-11-24 14:23:31] -rw-r--r--. 1 boincer umatlas        29 Nov 24 14:23 wrapper_checkpoint.txt
[2025-11-24 14:23:31] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 14:23 boinc_mmap_file
[2025-11-24 14:23:31] -rw-r--r--. 1 boincer umatlas      8957 Nov 24 14:23 stderr.txt
[2025-11-24 14:23:31] HITS file was successfully produced:
[2025-11-24 14:23:31] -rw-------. 1 boincer umatlas 922323396 Nov 24 14:18 shared/HITS.pool.root.1
[2025-11-24 14:23:31]  *** Contents of shared directory: ***
[2025-11-24 14:23:31] total 1309056
[2025-11-24 14:23:31] -rw-r--r--. 2 boincer umatlas 408873487 Nov 24 00:01 ATLAS.root_0
[2025-11-24 14:23:31] -rw-r--r--. 2 boincer umatlas    590094 Nov 24 00:01 input.tar.gz
[2025-11-24 14:23:31] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:01 start_atlas.sh
[2025-11-24 14:23:31] -rw-------. 1 boincer umatlas 922323396 Nov 24 14:18 HITS.pool.root.1
[2025-11-24 14:23:31] -rw-------. 1 boincer umatlas   8652800 Nov 24 14:23 result.tar.gz
14:23:32 (1477980): run_atlas exited; CPU time 223621.786442
14:23:32 (1477980): called boinc_finish(0)

</stderr_txt>
]]>

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