Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:10 (1798238): wrapper (7.7.26015): starting
00:00:10 (1798238): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 00:00:11] Arguments: --nthreads 9
[2025-11-24 00:00:11] Threads: 9
[2025-11-24 00:00:11] Checking for CVMFS
[2025-11-24 00:00:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:00:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:00:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:00:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:00:14] 2.13.3.0 8749 26718 302772 153233 3 146 19397698 21042176 21918 16776704 0 113847910 99.551 130789767 31396 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 00:00:14] CVMFS is ok
[2025-11-24 00:00:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:00:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:00:14] Further information can be found at the LHC@home message board.
[2025-11-24 00:00:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:00:14] Checking for apptainer binary...
[2025-11-24 00:00:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:00:14] Running /usr/bin/apptainer --version
[2025-11-24 00:00:14] apptainer version 1.4.4-1.el9
[2025-11-24 00:00:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:00:15] c-16-10.aglt2.org
[2025-11-24 00:00:15] apptainer works
[2025-11-24 00:00:15] Set ATHENA_PROC_NUMBER=9
[2025-11-24 00:00:15] Set ATHENA_CORE_NUMBER=9
[2025-11-24 00:00:15] Starting ATLAS job with PandaID=6895329886
[2025-11-24 00:00:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 21:31:37]  *** The last 200 lines of the pilot log: ***
[2025-11-25 21:31:37] 2025-11-25 05:58:50,972 | INFO     | monitor loop #5452: job 0:6895329886 is in state 'finished'
[2025-11-25 21:31:37] 2025-11-25 05:58:50,972 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:31:37] 2025-11-25 05:58:51,332 | INFO     | time since job start (89835s) is within the limit (172800.0s)
[2025-11-25 21:31:37] 2025-11-25 05:58:53,339 | INFO     | time since job start (89837s) is within the limit (172800.0s)
[2025-11-25 21:31:37] 2025-11-25 05:58:53,477 | INFO     | monitor loop #5453: job 0:6895329886 is in state 'finished'
[2025-11-25 21:31:37] 2025-11-25 05:58:53,477 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:31:37] 2025-11-25 05:58:55,346 | INFO     | time since job start (89839s) is within the limit (172800.0s)
[2025-11-25 21:31:37] 2025-11-25 05:58:55,982 | INFO     | monitor loop #5454: job 0:6895329886 is in state 'finished'
[2025-11-25 21:31:37] 2025-11-25 05:58:55,982 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:31:37] 2025-11-25 05:58:57,353 | INFO     | time since job start (89841s) is within the limit (172800.0s)
[2025-11-25 21:31:37] 2025-11-25 05:58:58,488 | INFO     | monitor loop #5455: job 0:6895329886 is in state 'finished'
[2025-11-25 21:31:37] 2025-11-25 05:58:58,488 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:31:37] 2025-11-25 05:58:59,360 | INFO     | time since job start (89843s) is within the limit (172800.0s)
[2025-11-25 21:31:37] 2025-11-25 05:59:00,993 | INFO     | monitor loop #5456: job 0:6895329886 is in state 'finished'
[2025-11-25 21:31:37] 2025-11-25 05:59:00,993 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:31:37] 2025-11-25 05:59:01,395 | INFO     | time since job start (89845s) is within the limit (172800.0s)
[2025-11-25 21:31:37] 2025-11-25 05:59:01,477 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 21:31:37] 2025-11-25 05:59:01,494 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2899.962225
[2025-11-25 21:31:37] 2025-11-25 05:59:01,510 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895329886/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 21:31:37] 2025-11-25 05:59:01,511 | INFO     | extracted standard info from prmon json
[2025-11-25 21:31:37] 2025-11-25 05:59:01,511 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 21:31:37] 2025-11-25 05:59:01,511 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 21:31:37] 2025-11-25 05:59:01,611 | INFO     | fitting pss+swap vs Time
[2025-11-25 21:31:37] 2025-11-25 05:59:01,622 | INFO     | sum of square deviations: 986981261350.3173
[2025-11-25 21:31:37] 2025-11-25 05:59:01,826 | INFO     | sum of deviations: 4054048676057.124
[2025-11-25 21:31:37] 2025-11-25 05:59:01,826 | INFO     | mean x: 1764005458.2590075
[2025-11-25 21:31:37] 2025-11-25 05:59:01,826 | INFO     | mean y: 3075562.839564922
[2025-11-25 21:31:37] 2025-11-25 05:59:01,826 | INFO     | intersect: -7242618223.513059
[2025-11-25 21:31:37] 2025-11-25 05:59:01,828 | INFO     | chi2: 24.011976459789178
[2025-11-25 21:31:37] 2025-11-25 05:59:01,840 | INFO     | sum of square deviations: 976951433484.8661
[2025-11-25 21:31:37] 2025-11-25 05:59:02,007 | INFO     | sum of deviations: 4606820791811.706
[2025-11-25 21:31:37] 2025-11-25 05:59:02,007 | INFO     | mean x: 1764005305.7633016
[2025-11-25 21:31:37] 2025-11-25 05:59:02,007 | INFO     | mean y: 3083965.912687585
[2025-11-25 21:31:37] 2025-11-25 05:59:02,007 | INFO     | intersect: -8315094441.86016
[2025-11-25 21:31:37] 2025-11-25 05:59:02,009 | INFO     | chi2: 20.293154285236678
[2025-11-25 21:31:37] 2025-11-25 05:59:02,010 | INFO     | current chi2=20.293154285236678 (change=15.487363902676218 %)
[2025-11-25 21:31:37] 2025-11-25 05:59:02,010 | INFO     | right removable region: 1465
[2025-11-25 21:31:37] 2025-11-25 05:59:02,016 | INFO     | sum of square deviations: 976950303764.8661
[2025-11-25 21:31:37] 2025-11-25 05:59:02,209 | INFO     | sum of deviations: 3478903061061.0615
[2025-11-25 21:31:37] 2025-11-25 05:59:02,209 | INFO     | mean x: 1764005610.7633016
[2025-11-25 21:31:37] 2025-11-25 05:59:02,210 | INFO     | mean y: 3084304.57366985
[2025-11-25 21:31:37] 2025-11-25 05:59:02,210 | INFO     | intersect: -6278509032.737328
[2025-11-25 21:31:37] 2025-11-25 05:59:02,216 | INFO     | chi2: 20.67677690936481
[2025-11-25 21:31:37] 2025-11-25 05:59:02,216 | INFO     | current chi2=20.67677690936481 (change=13.889733550295382 %)
[2025-11-25 21:31:37] 2025-11-25 05:59:02,217 | INFO     | left removable region: 10
[2025-11-25 21:31:37] 2025-11-25 05:59:02,218 | INFO     | sum of square deviations: 955123511737.308
[2025-11-25 21:31:37] 2025-11-25 05:59:02,353 | INFO     | sum of deviations: 3891690033646.1567
[2025-11-25 21:31:37] 2025-11-25 05:59:02,353 | INFO     | mean x: 1764005580.2707903
[2025-11-25 21:31:37] 2025-11-25 05:59:02,353 | INFO     | mean y: 3098124.0199312717
[2025-11-25 21:31:37] 2025-11-25 05:59:02,354 | INFO     | intersect: -7184415167.898845
[2025-11-25 21:31:37] 2025-11-25 05:59:02,355 | INFO     | chi2: 15.716824612512875
[2025-11-25 21:31:37] 2025-11-25 05:59:02,356 | INFO     | current memory leak: 4.07 B/s (using 1455 data points, chi2=15.72)
[2025-11-25 21:31:37] 2025-11-25 05:59:02,361 | INFO     | could have reported an average CPU frequency of 2896 MHz (52 samples)
[2025-11-25 21:31:37] 2025-11-25 05:59:02,362 | INFO     | ..............................
[2025-11-25 21:31:37] 2025-11-25 05:59:02,362 | INFO     | . Timing measurements:
[2025-11-25 21:31:37] 2025-11-25 05:59:02,362 | INFO     | . get job = 0 s
[2025-11-25 21:31:37] 2025-11-25 05:59:02,362 | INFO     | . initial setup = 7 s
[2025-11-25 21:31:37] 2025-11-25 05:59:02,362 | INFO     | . payload setup = 35 s
[2025-11-25 21:31:37] 2025-11-25 05:59:02,363 | INFO     | . stage-in = 0 s
[2025-11-25 21:31:37] 2025-11-25 05:59:02,363 | INFO     | . payload execution = 89680 s
[2025-11-25 21:31:37] 2025-11-25 05:59:02,363 | INFO     | . stage-out = 7 s
[2025-11-25 21:31:37] 2025-11-25 05:59:02,363 | INFO     | . log creation = 2 s
[2025-11-25 21:31:37] 2025-11-25 05:59:02,363 | INFO     | ..............................
[2025-11-25 21:31:37] 2025-11-25 05:59:03,157 | INFO     | 
[2025-11-25 21:31:37] 2025-11-25 05:59:03,157 | INFO     | job summary report
[2025-11-25 21:31:37] 2025-11-25 05:59:03,157 | INFO     | --------------------------------------------------
[2025-11-25 21:31:37] 2025-11-25 05:59:03,157 | INFO     | PanDA job id: 6895329886
[2025-11-25 21:31:37] 2025-11-25 05:59:03,158 | INFO     | task id: 47556137
[2025-11-25 21:31:37] 2025-11-25 05:59:03,158 | INFO     | errors: (none)
[2025-11-25 21:31:37] 2025-11-25 05:59:03,158 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 21:31:37] 2025-11-25 05:59:03,158 | INFO     | pilot state: finished 
[2025-11-25 21:31:37] 2025-11-25 05:59:03,158 | INFO     | transexitcode: 0
[2025-11-25 21:31:37] 2025-11-25 05:59:03,158 | INFO     | exeerrorcode: 0
[2025-11-25 21:31:37] 2025-11-25 05:59:03,159 | INFO     | exeerrordiag: 
[2025-11-25 21:31:37] 2025-11-25 05:59:03,159 | INFO     | exitcode: 0
[2025-11-25 21:31:37] 2025-11-25 05:59:03,159 | INFO     | exitmsg: OK
[2025-11-25 21:31:37] 2025-11-25 05:59:03,159 | INFO     | cpuconsumptiontime: 504974 s
[2025-11-25 21:31:37] 2025-11-25 05:59:03,159 | INFO     | nevents: 1000
[2025-11-25 21:31:37] 2025-11-25 05:59:03,159 | INFO     | neventsw: 0
[2025-11-25 21:31:37] 2025-11-25 05:59:03,160 | INFO     | pid: 1818325
[2025-11-25 21:31:37] 2025-11-25 05:59:03,160 | INFO     | pgrp: 1818325
[2025-11-25 21:31:37] 2025-11-25 05:59:03,160 | INFO     | corecount: 9
[2025-11-25 21:31:37] 2025-11-25 05:59:03,160 | INFO     | event service: False
[2025-11-25 21:31:37] 2025-11-25 05:59:03,160 | INFO     | sizes: {0: 2297979, 1: 2298580, 3: 2298692, 4: 2298863, 5: 2298891, 16: 2298947, 27: 2299103, 38: 2299131, 43: 2299421, 49: 2299449, 89720: 2365594, 89729: 2375379
[2025-11-25 21:31:37] 2025-11-25 05:59:03,160 | INFO     | --------------------------------------------------
[2025-11-25 21:31:37] 2025-11-25 05:59:03,160 | INFO     | 
[2025-11-25 21:31:37] 2025-11-25 05:59:03,169 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-25 21:31:37] 2025-11-25 05:59:03,200 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 21:31:37] 2025-11-25 05:59:03,200 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 21:31:37] 2025-11-25 05:59:03,201 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 21:31:37] 2025-11-25 05:59:03,201 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 21:31:37] 2025-11-25 05:59:03,201 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 21:31:37] 2025-11-25 05:59:03,201 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 21:31:37] 2025-11-25 05:59:03,201 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 21:31:37] 2025-11-25 05:59:03,201 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 21:31:37] 2025-11-25 05:59:03,202 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 21:31:37] 2025-11-25 05:59:03,202 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 21:31:37] 2025-11-25 05:59:03,202 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 21:31:37] 2025-11-25 05:59:03,202 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 21:31:37] 2025-11-25 05:59:03,202 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 21:31:37] 2025-11-25 05:59:03,202 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 21:31:37] 2025-11-25 05:59:03,203 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 21:31:37] 2025-11-25 05:59:03,203 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 21:31:37] 2025-11-25 05:59:03,203 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 21:31:37] 2025-11-25 05:59:03,203 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 21:31:37] 2025-11-25 05:59:03,203 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 21:31:37] 2025-11-25 05:59:03,203 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 21:31:37] 2025-11-25 05:59:03,208 | INFO     | job 6895329886 has completed (purged errors)
[2025-11-25 21:31:37] 2025-11-25 05:59:03,208 | INFO     | overall cleanup function is called
[2025-11-25 21:31:37] 2025-11-25 05:59:04,316 | INFO     | --- collectZombieJob: --- 10, [1818325]
[2025-11-25 21:31:37] 2025-11-25 05:59:04,316 | INFO     | zombie collector waiting for pid 1818325
[2025-11-25 21:31:37] 2025-11-25 05:59:04,316 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 21:31:37] 2025-11-25 05:59:04,316 | INFO     | collected zombie processes
[2025-11-25 21:31:37] 2025-11-25 05:59:04,317 | INFO     | will attempt to kill all subprocesses of pid=1818325
[2025-11-25 21:31:37] 2025-11-25 05:59:05,892 | INFO     | process IDs to be killed: [1818325] (in reverse order)
[2025-11-25 21:31:37] 2025-11-25 05:59:06,145 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 21:31:37] 2025-11-25 05:59:06,145 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 21:31:37] 2025-11-25 05:59:06,170 | INFO     | did not find any defunct processes belonging to 1818325
[2025-11-25 21:31:37] 2025-11-25 05:59:06,194 | INFO     | did not find any defunct processes belonging to 1818325
[2025-11-25 21:31:37] 2025-11-25 05:59:06,196 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 21:31:37] 2025-11-25 05:59:06,196 | INFO     | ready for new job
[2025-11-25 21:31:37] 2025-11-25 05:59:06,196 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 21:31:37] 2025-11-25 05:59:06,203 | INFO     | ***************************************
[2025-11-25 21:31:37] 2025-11-25 05:59:06,203 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 21:31:37] 2025-11-25 05:59:06,204 | INFO     | ***************************************
[2025-11-25 21:31:37] 2025-11-25 05:59:06,204 | INFO     | 
[2025-11-25 21:31:37] 2025-11-25 05:59:06,206 | INFO     | architecture information:
[2025-11-25 21:31:37] 2025-11-25 05:59:06,207 | INFO     | executing command: cat /etc/os-release
[2025-11-25 21:31:37] 2025-11-25 05:59:06,255 | INFO     | cat /etc/os-release:
[2025-11-25 21:31:37] NAME="CentOS Linux"
[2025-11-25 21:31:37] VERSION="7 (Core)"
[2025-11-25 21:31:37] ID="centos"
[2025-11-25 21:31:37] ID_LIKE="rhel fedora"
[2025-11-25 21:31:37] VERSION_ID="7"
[2025-11-25 21:31:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 21:31:37] ANSI_COLOR="0;31"
[2025-11-25 21:31:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 21:31:37] HOME_URL="https://www.centos.org/"
[2025-11-25 21:31:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 21:31:37] 
[2025-11-25 21:31:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 21:31:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 21:31:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 21:31:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 21:31:37] 
[2025-11-25 21:31:37] 2025-11-25 05:59:06,255 | INFO     | ***************************************
[2025-11-25 21:31:37] 2025-11-25 05:59:06,759 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-25 21:31:37] 2025-11-25 05:59:06,821 | INFO     | sufficient remaining disk space (48799678464 B)
[2025-11-25 21:31:37] 2025-11-25 05:59:06,822 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 21:31:37] 2025-11-25 05:59:06,822 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 21:31:37] 2025-11-25 05:59:06,822 | INFO     | update_server=False
[2025-11-25 21:31:37] 2025-11-25 05:59:06,822 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 21:31:37] 2025-11-25 05:59:06,823 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 21:31:37] 2025-11-25 05:59:06,867 | INFO     | all data control threads have been joined
[2025-11-25 21:31:37] 2025-11-25 05:59:07,065 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:31:37] 2025-11-25 05:59:07,065 | INFO     | aborting loop
[2025-11-25 21:31:37] 2025-11-25 05:59:07,110 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 21:31:37] 2025-11-25 05:59:07,260 | INFO     | all job control threads have been joined
[2025-11-25 21:31:37] 2025-11-25 05:59:07,712 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:31:37] 2025-11-25 05:59:07,828 | INFO     | [job] retrieve thread has finished
[2025-11-25 21:31:37] 2025-11-25 05:59:07,873 | INFO     | [payload] validate_post thread has finished
[2025-11-25 21:31:37] 2025-11-25 05:59:07,873 | INFO     | [data] control thread has finished
[2025-11-25 21:31:37] 2025-11-25 05:59:07,937 | INFO     | [payload] failed_post thread has finished
[2025-11-25 21:31:37] 2025-11-25 05:59:08,072 | INFO     | [job] job monitor thread has finished
[2025-11-25 21:31:37] 2025-11-25 05:59:08,206 | INFO     | [job] validate thread has finished
[2025-11-25 21:31:37] 2025-11-25 05:59:08,231 | INFO     | all payload control threads have been joined
[2025-11-25 21:31:37] 2025-11-25 05:59:08,266 | INFO     | [job] control thread has finished
[2025-11-25 21:31:37] 2025-11-25 05:59:08,395 | INFO     | [data] copytool_in thread has finished
[2025-11-25 21:31:37] 2025-11-25 05:59:08,487 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 21:31:37] 2025-11-25 05:59:08,689 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 21:31:37] 2025-11-25 05:59:08,718 | INFO     | [job] queue monitor thread has finished
[2025-11-25 21:31:37] 2025-11-25 05:59:08,825 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 21:31:37] 2025-11-25 05:59:08,831 | INFO     | [data] copytool_out thread has finished
[2025-11-25 21:31:37] 2025-11-25 05:59:08,903 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 21:31:37] 2025-11-25 05:59:09,238 | INFO     | [payload] control thread has finished
[2025-11-25 21:31:37] 2025-11-25 05:59:11,131 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 21:31:37] 2025-11-25 05:59:15,876 | INFO     | [monitor] cgroup control has ended
[2025-11-25 21:31:37] 2025-11-25 05:59:17,411 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140401291994944)>', '<ExcThread(monitor, started 140400635393792)>']
[2025-11-25 21:31:37] 2025-11-25 05:59:22,436 | INFO     | all workflow threads have been joined
[2025-11-25 21:31:37] 2025-11-25 05:59:22,436 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 21:31:37] 2025-11-25 05:59:22,437 | INFO     | traces error code: 0
[2025-11-25 21:31:37] 2025-11-25 05:59:22,437 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 21:31:37] 2025-11-25 05:59:35,741 | INFO     | PID=1805681 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 21:31:37] 2025-11-25 05:59:35,741 | INFO     | .. there are 45 such processes running
[2025-11-25 21:31:37] 2025-11-25 05:59:35,742 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 21:31:37] 2025-11-25 05:59:35,742 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 21:31:37] 2025-11-25 05:59:35,742 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 21:31:37] 2025-11-25 05:59:35,742 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 21:31:37] 2025-11-25 05:59:35,743 | CRITICAL | thread 'MainThread' is not alive
[2025-11-25 21:31:37] 2025-11-25 05:59:35,743 | INFO     | [monitor] control thread has ended
[2025-11-25 21:31:37] 2025-11-25 05:59:35,958 [wrapper] ==== pilot stdout END ====
[2025-11-25 21:31:37] 2025-11-25 05:59:35,980 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 21:31:37] 2025-11-25 05:59:35,983 [wrapper] pilotpid: 1805681
[2025-11-25 21:31:37] 2025-11-25 05:59:35,986 [wrapper] Pilot exit status: 0
[2025-11-25 21:31:37] 2025-11-25 05:59:36,056 [wrapper] pandaids: 6895329886
[2025-11-25 21:31:37] 2025-11-25 05:59:36,421 [wrapper] cleanup supervisor_pilot 1836920 1805682
[2025-11-25 21:31:37] 2025-11-25 05:59:36,425 [wrapper] Test setup, not cleaning
[2025-11-25 21:31:37] 2025-11-25 05:59:36,428 [wrapper] apfmon messages muted
[2025-11-25 21:31:37] 2025-11-25 05:59:36,431 [wrapper] ==== wrapper stdout END ====
[2025-11-25 21:31:37] 2025-11-25 05:59:36,434 [wrapper] ==== wrapper stderr END ====
[2025-11-25 21:31:37]  *** Error codes and diagnostics ***
[2025-11-25 21:31:37]     "exeErrorCode": 0,
[2025-11-25 21:31:37]     "exeErrorDiag": "",
[2025-11-25 21:31:37]     "pilotErrorCode": 0,
[2025-11-25 21:31:37]     "pilotErrorDiag": "",
[2025-11-25 21:31:37]  *** Listing of results directory ***
[2025-11-25 21:31:37] total 1329608
[2025-11-25 21:31:37] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 14:48 pilot3.tar.gz
[2025-11-25 21:31:37] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 14:51 queuedata.json
[2025-11-25 21:31:37] -rwx------. 1 boincer umatlas     36292 Nov 21 14:53 runpilot2-wrapper.sh
[2025-11-25 21:31:37] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 21:31:37] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:00 run_atlas
[2025-11-25 21:31:37] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:00 job.xml
[2025-11-25 21:31:37] -rw-r--r--. 2 boincer umatlas 410606887 Nov 24 00:00 EVNT.47483658._000126.pool.root.1
[2025-11-25 21:31:37] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:00 start_atlas.sh
[2025-11-25 21:31:37] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:00 shared
[2025-11-25 21:31:37] -rw-r--r--. 2 boincer umatlas    590101 Nov 24 00:00 input.tar.gz
[2025-11-25 21:31:37] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:00 boinc_lockfile
[2025-11-25 21:31:37] -rw-r--r--. 1 boincer umatlas      2786 Nov 24 00:00 pandaJob.out
[2025-11-25 21:31:37] -rw-------. 1 boincer umatlas        57 Nov 24 00:00 setup.sh.local
[2025-11-25 21:31:37] -rw-------. 1 boincer umatlas    989786 Nov 24 00:01 agis_schedconf.cvmfs.json
[2025-11-25 21:31:37] drwx------. 5 boincer umatlas      4096 Nov 24 00:01 pilot3
[2025-11-25 21:31:37] -rw-r--r--. 1 boincer umatlas       533 Nov 25 00:19 boinc_task_state.xml
[2025-11-25 21:31:37] -rw-------. 1 boincer umatlas 918852745 Nov 25 00:57 HITS.47556137._001252.pool.root.1
[2025-11-25 21:31:37] -rw-------. 1 boincer umatlas      1053 Nov 25 00:58 memory_monitor_summary.json
[2025-11-25 21:31:37] -rw-------. 1 boincer umatlas   1516227 Nov 25 00:58 agis_ddmendpoints.agis.ALL.json
[2025-11-25 21:31:37] -rw-------. 1 boincer umatlas   2631441 Nov 25 00:58 log.47556137._001252.job.log.tgz.1
[2025-11-25 21:31:37] -rw-------. 1 boincer umatlas      8615 Nov 25 00:59 heartbeat.json
[2025-11-25 21:31:37] -rw-------. 1 boincer umatlas        95 Nov 25 00:59 pilot_heartbeat.json
[2025-11-25 21:31:37] -rw-------. 1 boincer umatlas       893 Nov 25 00:59 pilotlog.txt
[2025-11-25 21:31:37] -rw-------. 1 boincer umatlas  11441902 Nov 25 00:59 log.47556137._001252.job.log.1
[2025-11-25 21:31:37] -rw-------. 1 boincer umatlas       353 Nov 25 00:59 output.list
[2025-11-25 21:31:37] -rw-r--r--. 1 boincer umatlas       620 Nov 25 00:59 runtime_log
[2025-11-25 21:31:37] -rw-------. 1 boincer umatlas  14090240 Nov 25 00:59 result.tar.gz
[2025-11-25 21:31:37] -rw-------. 1 boincer umatlas       659 Nov 25 00:59 ymlMDmjNmg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmNnHKDmSf5GRn.diag
[2025-11-25 21:31:37] -rw-r--r--. 1 boincer umatlas      9338 Nov 25 00:59 runtime_log.err
[2025-11-25 21:31:37] -rw-r--r--. 1 boincer umatlas        29 Nov 25 21:31 wrapper_checkpoint.txt
[2025-11-25 21:31:37] -rw-r--r--. 1 boincer umatlas      6525 Nov 25 21:31 init_data.xml
[2025-11-25 21:31:37] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 21:31 boinc_mmap_file
[2025-11-25 21:31:37] -rw-r--r--. 1 boincer umatlas     21778 Nov 25 21:31 stderr.txt
[2025-11-25 21:31:37] HITS file was successfully produced:
[2025-11-25 21:31:37] -rw-------. 1 boincer umatlas 918852745 Nov 25 00:57 shared/HITS.pool.root.1
[2025-11-25 21:31:37]  *** Contents of shared directory: ***
[2025-11-25 21:31:37] total 1312668
[2025-11-25 21:31:37] -rw-r--r--. 2 boincer umatlas 410606887 Nov 24 00:00 ATLAS.root_0
[2025-11-25 21:31:37] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:00 start_atlas.sh
[2025-11-25 21:31:37] -rw-r--r--. 2 boincer umatlas    590101 Nov 24 00:00 input.tar.gz
[2025-11-25 21:31:37] -rw-------. 1 boincer umatlas 918852745 Nov 25 00:57 HITS.pool.root.1
[2025-11-25 21:31:37] -rw-------. 1 boincer umatlas  14090240 Nov 25 00:59 result.tar.gz
21:31:39 (1798238): run_atlas exited; CPU time 508861.763506
21:31:39 (1798238): called boinc_finish(0)

</stderr_txt>
]]>

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