Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:09 (2207189): wrapper (7.7.26015): starting
00:01:09 (2207189): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 00:01:09] Arguments: --nthreads 9
[2025-11-24 00:01:09] Threads: 9
[2025-11-24 00:01:09] Checking for CVMFS
[2025-11-24 00:01:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:01:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:01:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:01:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:01:12] 2.13.3.0 15733 25284 345552 153233 1 143 27413371 32935937 26807 16776704 0 135056852 99.717 94293558 26018 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 00:01:12] CVMFS is ok
[2025-11-24 00:01:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:01:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:01:12] Further information can be found at the LHC@home message board.
[2025-11-24 00:01:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:01:12] Checking for apptainer binary...
[2025-11-24 00:01:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:01:12] Running /usr/bin/apptainer --version
[2025-11-24 00:01:12] apptainer version 1.4.4-1.el9
[2025-11-24 00:01:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:01:13] c-8-39.aglt2.org
[2025-11-24 00:01:13] apptainer works
[2025-11-24 00:01:13] Set ATHENA_PROC_NUMBER=9
[2025-11-24 00:01:13] Set ATHENA_CORE_NUMBER=9
[2025-11-24 00:01:13] Starting ATLAS job with PandaID=6895337333
[2025-11-24 00:01:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 01:06:57]  *** The last 200 lines of the pilot log: ***
[2025-11-25 01:06:57] 2025-11-25 06:05:37,725 | INFO     | monitor loop #5653: job 0:6895337333 is in state 'finished'
[2025-11-25 01:06:57] 2025-11-25 06:05:37,727 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:06:57] 2025-11-25 06:05:39,452 | INFO     | time since job start (90149s) is within the limit (172800.0s)
[2025-11-25 01:06:57] 2025-11-25 06:05:40,232 | INFO     | monitor loop #5654: job 0:6895337333 is in state 'finished'
[2025-11-25 01:06:57] 2025-11-25 06:05:40,233 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:06:57] 2025-11-25 06:05:41,459 | INFO     | time since job start (90151s) is within the limit (172800.0s)
[2025-11-25 01:06:57] 2025-11-25 06:05:42,752 | INFO     | monitor loop #5655: job 0:6895337333 is in state 'finished'
[2025-11-25 01:06:57] 2025-11-25 06:05:42,793 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:06:57] 2025-11-25 06:05:44,413 | INFO     | PID=2221576 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 01:06:57] 2025-11-25 06:05:44,413 | INFO     | .. there are 51 such processes running
[2025-11-25 01:06:57] 2025-11-25 06:05:45,312 | INFO     | monitor loop #5656: job 0:6895337333 is in state 'finished'
[2025-11-25 01:06:57] 2025-11-25 06:05:45,313 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:06:57] 2025-11-25 06:05:45,416 | INFO     | time since job start (90155s) is within the limit (172800.0s)
[2025-11-25 01:06:57] 2025-11-25 06:05:47,429 | INFO     | time since job start (90157s) is within the limit (172800.0s)
[2025-11-25 01:06:57] 2025-11-25 06:05:47,830 | INFO     | monitor loop #5657: job 0:6895337333 is in state 'finished'
[2025-11-25 01:06:57] 2025-11-25 06:05:47,830 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:06:57] 2025-11-25 06:05:49,433 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 01:06:57] 2025-11-25 06:05:49,435 | INFO     | time since job start (90159s) is within the limit (172800.0s)
[2025-11-25 01:06:57] 2025-11-25 06:05:49,456 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2711.9922500000002
[2025-11-25 01:06:57] 2025-11-25 06:05:49,469 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895337333/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 01:06:57] 2025-11-25 06:05:49,471 | INFO     | extracted standard info from prmon json
[2025-11-25 01:06:57] 2025-11-25 06:05:49,471 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 01:06:57] 2025-11-25 06:05:49,472 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 01:06:57] 2025-11-25 06:05:49,502 | INFO     | fitting pss+swap vs Time
[2025-11-25 01:06:57] 2025-11-25 06:05:49,504 | INFO     | sum of square deviations: 993048908174.5187
[2025-11-25 01:06:57] 2025-11-25 06:05:49,562 | INFO     | sum of deviations: 6619074343938.553
[2025-11-25 01:06:57] 2025-11-25 06:05:49,563 | INFO     | mean x: 1764005734.6221168
[2025-11-25 01:06:57] 2025-11-25 06:05:49,563 | INFO     | mean y: 3069252.185888738
[2025-11-25 01:06:57] 2025-11-25 06:05:49,563 | INFO     | intersect: -11754745498.410236
[2025-11-25 01:06:57] 2025-11-25 06:05:49,566 | INFO     | chi2: 30.194714618855485
[2025-11-25 01:06:57] 2025-11-25 06:05:49,568 | INFO     | sum of square deviations: 982977816556.2041
[2025-11-25 01:06:57] 2025-11-25 06:05:49,705 | INFO     | sum of deviations: 7153637142157.69
[2025-11-25 01:06:57] 2025-11-25 06:05:49,705 | INFO     | mean x: 1764005582.1245744
[2025-11-25 01:06:57] 2025-11-25 06:05:49,705 | INFO     | mean y: 3077345.5098706605
[2025-11-25 01:06:57] 2025-11-25 06:05:49,706 | INFO     | intersect: -12834502138.704594
[2025-11-25 01:06:57] 2025-11-25 06:05:49,707 | INFO     | chi2: 26.75318679607398
[2025-11-25 01:06:57] 2025-11-25 06:05:49,708 | INFO     | current chi2=26.75318679607398 (change=11.397782248395217 %)
[2025-11-25 01:06:57] 2025-11-25 06:05:49,708 | INFO     | right removable region: 1468
[2025-11-25 01:06:57] 2025-11-25 06:05:49,714 | INFO     | sum of square deviations: 982976986955.7008
[2025-11-25 01:06:57] 2025-11-25 06:05:49,833 | INFO     | sum of deviations: 5970496331500.562
[2025-11-25 01:06:57] 2025-11-25 06:05:49,834 | INFO     | mean x: 1764005887.125936
[2025-11-25 01:06:57] 2025-11-25 06:05:49,834 | INFO     | mean y: 3079071.6889040163
[2025-11-25 01:06:57] 2025-11-25 06:05:49,834 | INFO     | intersect: -10711302666.228052
[2025-11-25 01:06:57] 2025-11-25 06:05:49,839 | INFO     | chi2: 25.801860127682943
[2025-11-25 01:06:57] 2025-11-25 06:05:49,840 | INFO     | current chi2=25.801860127682943 (change=14.548421956037853 %)
[2025-11-25 01:06:57] 2025-11-25 06:05:49,840 | INFO     | left removable region: 10
[2025-11-25 01:06:57] 2025-11-25 06:05:49,842 | INFO     | sum of square deviations: 961060064990.9515
[2025-11-25 01:06:57] 2025-11-25 06:05:49,956 | INFO     | sum of deviations: 6060867575669.699
[2025-11-25 01:06:57] 2025-11-25 06:05:49,956 | INFO     | mean x: 1764005856.632373
[2025-11-25 01:06:57] 2025-11-25 06:05:49,960 | INFO     | mean y: 3097178.400548697
[2025-11-25 01:06:57] 2025-11-25 06:05:49,960 | INFO     | intersect: -11121499804.885052
[2025-11-25 01:06:57] 2025-11-25 06:05:49,963 | INFO     | chi2: 18.736237058178407
[2025-11-25 01:06:57] 2025-11-25 06:05:49,963 | INFO     | current memory leak: 6.31 B/s (using 1458 data points, chi2=18.74)
[2025-11-25 01:06:57] 2025-11-25 06:05:49,968 | INFO     | could have reported an average CPU frequency of 2712 MHz (53 samples)
[2025-11-25 01:06:57] 2025-11-25 06:05:49,969 | INFO     | ..............................
[2025-11-25 01:06:57] 2025-11-25 06:05:49,969 | INFO     | . Timing measurements:
[2025-11-25 01:06:57] 2025-11-25 06:05:49,969 | INFO     | . get job = 0 s
[2025-11-25 01:06:57] 2025-11-25 06:05:49,969 | INFO     | . initial setup = 11 s
[2025-11-25 01:06:57] 2025-11-25 06:05:49,969 | INFO     | . payload setup = 60 s
[2025-11-25 01:06:57] 2025-11-25 06:05:49,969 | INFO     | . stage-in = 1 s
[2025-11-25 01:06:57] 2025-11-25 06:05:49,969 | INFO     | . payload execution = 89928 s
[2025-11-25 01:06:57] 2025-11-25 06:05:49,970 | INFO     | . stage-out = 16 s
[2025-11-25 01:06:57] 2025-11-25 06:05:49,970 | INFO     | . log creation = 3 s
[2025-11-25 01:06:57] 2025-11-25 06:05:49,970 | INFO     | ..............................
[2025-11-25 01:06:57] 2025-11-25 06:05:50,191 | INFO     | 
[2025-11-25 01:06:57] 2025-11-25 06:05:50,191 | INFO     | job summary report
[2025-11-25 01:06:57] 2025-11-25 06:05:50,191 | INFO     | --------------------------------------------------
[2025-11-25 01:06:57] 2025-11-25 06:05:50,192 | INFO     | PanDA job id: 6895337333
[2025-11-25 01:06:57] 2025-11-25 06:05:50,192 | INFO     | task id: 47556149
[2025-11-25 01:06:57] 2025-11-25 06:05:50,192 | INFO     | errors: (none)
[2025-11-25 01:06:57] 2025-11-25 06:05:50,192 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 01:06:57] 2025-11-25 06:05:50,192 | INFO     | pilot state: finished 
[2025-11-25 01:06:57] 2025-11-25 06:05:50,192 | INFO     | transexitcode: 0
[2025-11-25 01:06:57] 2025-11-25 06:05:50,192 | INFO     | exeerrorcode: 0
[2025-11-25 01:06:57] 2025-11-25 06:05:50,192 | INFO     | exeerrordiag: 
[2025-11-25 01:06:57] 2025-11-25 06:05:50,193 | INFO     | exitcode: 0
[2025-11-25 01:06:57] 2025-11-25 06:05:50,193 | INFO     | exitmsg: OK
[2025-11-25 01:06:57] 2025-11-25 06:05:50,193 | INFO     | cpuconsumptiontime: 342906 s
[2025-11-25 01:06:57] 2025-11-25 06:05:50,193 | INFO     | nevents: 1000
[2025-11-25 01:06:57] 2025-11-25 06:05:50,193 | INFO     | neventsw: 0
[2025-11-25 01:06:57] 2025-11-25 06:05:50,193 | INFO     | pid: 2233596
[2025-11-25 01:06:57] 2025-11-25 06:05:50,193 | INFO     | pgrp: 2233596
[2025-11-25 01:06:57] 2025-11-25 06:05:50,194 | INFO     | corecount: 9
[2025-11-25 01:06:57] 2025-11-25 06:05:50,196 | INFO     | event service: False
[2025-11-25 01:06:57] 2025-11-25 06:05:50,196 | INFO     | sizes: {0: 2297926, 1: 2298527, 2: 2298639, 3: 2298639, 4: 2298639, 6: 2298994, 17: 2298994, 29: 2299022, 40: 2299050, 51: 2299078, 59: 2299368, 62: 2299676, 89994
[2025-11-25 01:06:57] 2025-11-25 06:05:50,197 | INFO     | --------------------------------------------------
[2025-11-25 01:06:57] 2025-11-25 06:05:50,197 | INFO     | 
[2025-11-25 01:06:57] 2025-11-25 06:05:50,197 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 01:06:57] 2025-11-25 06:05:50,270 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 01:06:57] 2025-11-25 06:05:50,270 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 01:06:57] 2025-11-25 06:05:50,270 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 01:06:57] 2025-11-25 06:05:50,270 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 01:06:57] 2025-11-25 06:05:50,273 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 01:06:57] 2025-11-25 06:05:50,273 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 01:06:57] 2025-11-25 06:05:50,274 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 01:06:57] 2025-11-25 06:05:50,274 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 01:06:57] 2025-11-25 06:05:50,274 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 01:06:57] 2025-11-25 06:05:50,274 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 01:06:57] 2025-11-25 06:05:50,274 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 01:06:57] 2025-11-25 06:05:50,274 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 01:06:57] 2025-11-25 06:05:50,274 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 01:06:57] 2025-11-25 06:05:50,275 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 01:06:57] 2025-11-25 06:05:50,275 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 01:06:57] 2025-11-25 06:05:50,275 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 01:06:57] 2025-11-25 06:05:50,275 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 01:06:57] 2025-11-25 06:05:50,275 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 01:06:57] 2025-11-25 06:05:50,275 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 01:06:57] 2025-11-25 06:05:50,275 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 01:06:57] 2025-11-25 06:05:50,276 | INFO     | job 6895337333 has completed (purged errors)
[2025-11-25 01:06:57] 2025-11-25 06:05:50,276 | INFO     | overall cleanup function is called
[2025-11-25 01:06:57] 2025-11-25 06:05:51,324 | INFO     | --- collectZombieJob: --- 10, [2233596]
[2025-11-25 01:06:57] 2025-11-25 06:05:51,325 | INFO     | zombie collector waiting for pid 2233596
[2025-11-25 01:06:57] 2025-11-25 06:05:51,325 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 01:06:57] 2025-11-25 06:05:51,325 | INFO     | collected zombie processes
[2025-11-25 01:06:57] 2025-11-25 06:05:51,325 | INFO     | will attempt to kill all subprocesses of pid=2233596
[2025-11-25 01:06:57] 2025-11-25 06:05:55,600 | INFO     | process IDs to be killed: [2233596] (in reverse order)
[2025-11-25 01:06:57] 2025-11-25 06:05:56,486 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 01:06:57] 2025-11-25 06:05:56,486 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 01:06:57] 2025-11-25 06:05:56,507 | INFO     | did not find any defunct processes belonging to 2233596
[2025-11-25 01:06:57] 2025-11-25 06:05:56,555 | INFO     | did not find any defunct processes belonging to 2233596
[2025-11-25 01:06:57] 2025-11-25 06:05:56,600 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 01:06:57] 2025-11-25 06:05:56,600 | INFO     | ready for new job
[2025-11-25 01:06:57] 2025-11-25 06:05:56,600 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 01:06:57] 2025-11-25 06:05:56,614 | INFO     | ***************************************
[2025-11-25 01:06:57] 2025-11-25 06:05:56,614 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 01:06:57] 2025-11-25 06:05:56,614 | INFO     | ***************************************
[2025-11-25 01:06:57] 2025-11-25 06:05:56,614 | INFO     | 
[2025-11-25 01:06:57] 2025-11-25 06:05:56,618 | INFO     | architecture information:
[2025-11-25 01:06:57] 2025-11-25 06:05:56,623 | INFO     | executing command: cat /etc/os-release
[2025-11-25 01:06:57] 2025-11-25 06:05:56,698 | INFO     | cat /etc/os-release:
[2025-11-25 01:06:57] NAME="CentOS Linux"
[2025-11-25 01:06:57] VERSION="7 (Core)"
[2025-11-25 01:06:57] ID="centos"
[2025-11-25 01:06:57] ID_LIKE="rhel fedora"
[2025-11-25 01:06:57] VERSION_ID="7"
[2025-11-25 01:06:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 01:06:57] ANSI_COLOR="0;31"
[2025-11-25 01:06:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 01:06:57] HOME_URL="https://www.centos.org/"
[2025-11-25 01:06:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 01:06:57] 
[2025-11-25 01:06:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 01:06:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 01:06:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 01:06:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 01:06:57] 
[2025-11-25 01:06:57] 2025-11-25 06:05:56,699 | INFO     | ***************************************
[2025-11-25 01:06:57] 2025-11-25 06:05:57,202 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 01:06:57] 2025-11-25 06:05:57,295 | INFO     | sufficient remaining disk space (69901221888 B)
[2025-11-25 01:06:57] 2025-11-25 06:05:57,295 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 01:06:57] 2025-11-25 06:05:57,296 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 01:06:57] 2025-11-25 06:05:57,296 | INFO     | update_server=False
[2025-11-25 01:06:57] 2025-11-25 06:05:57,296 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 01:06:57] 2025-11-25 06:05:57,296 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:06:57] 2025-11-25 06:05:57,296 | INFO     | aborting loop
[2025-11-25 01:06:57] 2025-11-25 06:05:57,297 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 01:06:57] 2025-11-25 06:05:57,298 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 01:06:57] 2025-11-25 06:05:57,484 | INFO     | all data control threads have been joined
[2025-11-25 01:06:57] 2025-11-25 06:05:57,885 | INFO     | all payload control threads have been joined
[2025-11-25 01:06:57] 2025-11-25 06:05:58,301 | INFO     | [job] retrieve thread has finished
[2025-11-25 01:06:57] 2025-11-25 06:05:58,316 | INFO     | [job] job monitor thread has finished
[2025-11-25 01:06:57] 2025-11-25 06:05:58,318 | INFO     | all job control threads have been joined
[2025-11-25 01:06:57] 2025-11-25 06:05:58,405 | INFO     | [payload] validate_post thread has finished
[2025-11-25 01:06:57] 2025-11-25 06:05:58,407 | INFO     | [payload] failed_post thread has finished
[2025-11-25 01:06:57] 2025-11-25 06:05:58,490 | INFO     | [data] control thread has finished
[2025-11-25 01:06:57] 2025-11-25 06:05:58,891 | INFO     | [payload] control thread has finished
[2025-11-25 01:06:57] 2025-11-25 06:05:59,050 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 01:06:57] 2025-11-25 06:05:59,233 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:06:57] 2025-11-25 06:05:59,305 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 01:06:57] 2025-11-25 06:05:59,325 | INFO     | [job] control thread has finished
[2025-11-25 01:06:57] 2025-11-25 06:05:59,336 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 01:06:57] 2025-11-25 06:05:59,349 | INFO     | [data] copytool_in thread has finished
[2025-11-25 01:06:57] 2025-11-25 06:05:59,351 | INFO     | [data] copytool_out thread has finished
[2025-11-25 01:06:57] 2025-11-25 06:05:59,361 | INFO     | [job] validate thread has finished
[2025-11-25 01:06:57] 2025-11-25 06:05:59,372 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 01:06:57] 2025-11-25 06:06:00,241 | INFO     | [job] queue monitor thread has finished
[2025-11-25 01:06:57] 2025-11-25 06:06:01,343 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 01:06:57] 2025-11-25 06:06:25,981 | INFO     | PID=2221576 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 01:06:57] 2025-11-25 06:06:25,982 | INFO     | .. there are 51 such processes running
[2025-11-25 01:06:57] 2025-11-25 06:06:25,998 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 01:06:57] 2025-11-25 06:06:25,998 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 01:06:57] 2025-11-25 06:06:25,998 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 01:06:57] 2025-11-25 06:06:48,969 | INFO     | [monitor] cgroup control has ended
[2025-11-25 01:06:57] 2025-11-25 06:06:49,672 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139899930789696)>', '<ExcThread(monitor, started 139899248285440)>']
[2025-11-25 01:06:57] 2025-11-25 06:06:50,285 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 01:06:57] 2025-11-25 06:06:50,286 | INFO     | [monitor] control thread has ended
[2025-11-25 01:06:57] 2025-11-25 06:06:54,707 | INFO     | all workflow threads have been joined
[2025-11-25 01:06:57] 2025-11-25 06:06:54,708 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 01:06:57] 2025-11-25 06:06:54,708 | INFO     | traces error code: 0
[2025-11-25 01:06:57] 2025-11-25 06:06:54,708 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 01:06:57] 2025-11-25 06:06:55,554 [wrapper] ==== pilot stdout END ====
[2025-11-25 01:06:57] 2025-11-25 06:06:55,590 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 01:06:57] 2025-11-25 06:06:55,611 [wrapper] pilotpid: 2221576
[2025-11-25 01:06:57] 2025-11-25 06:06:55,627 [wrapper] Pilot exit status: 0
[2025-11-25 01:06:57] 2025-11-25 06:06:55,726 [wrapper] pandaids: 6895337333
[2025-11-25 01:06:57] 2025-11-25 06:06:56,039 [wrapper] cleanup supervisor_pilot 3210885 2221577
[2025-11-25 01:06:57] 2025-11-25 06:06:56,072 [wrapper] Test setup, not cleaning
[2025-11-25 01:06:57] 2025-11-25 06:06:56,096 [wrapper] apfmon messages muted
[2025-11-25 01:06:57] 2025-11-25 06:06:56,112 [wrapper] ==== wrapper stdout END ====
[2025-11-25 01:06:57] 2025-11-25 06:06:56,151 [wrapper] ==== wrapper stderr END ====
[2025-11-25 01:06:57]  *** Error codes and diagnostics ***
[2025-11-25 01:06:57]     "exeErrorCode": 0,
[2025-11-25 01:06:57]     "exeErrorDiag": "",
[2025-11-25 01:06:57]     "pilotErrorCode": 0,
[2025-11-25 01:06:57]     "pilotErrorDiag": "",
[2025-11-25 01:06:57]  *** Listing of results directory ***
[2025-11-25 01:06:57] total 1330856
[2025-11-25 01:06:57] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 01:31 pilot3.tar.gz
[2025-11-25 01:06:57] -rwx------. 1 boincer umatlas     36292 Nov 22 02:03 runpilot2-wrapper.sh
[2025-11-25 01:06:57] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 02:03 queuedata.json
[2025-11-25 01:06:57] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 01:06:57] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:01 run_atlas
[2025-11-25 01:06:57] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:01 job.xml
[2025-11-25 01:06:57] -rw-r--r--. 2 boincer umatlas 411515897 Nov 24 00:01 EVNT.47483658._001074.pool.root.1
[2025-11-25 01:06:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:01 start_atlas.sh
[2025-11-25 01:06:57] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:01 shared
[2025-11-25 01:06:57] -rw-r--r--. 2 boincer umatlas    590094 Nov 24 00:01 input.tar.gz
[2025-11-25 01:06:57] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:01 boinc_lockfile
[2025-11-25 01:06:57] -rw-r--r--. 1 boincer umatlas      2784 Nov 24 00:01 pandaJob.out
[2025-11-25 01:06:57] -rw-------. 1 boincer umatlas        57 Nov 24 00:01 setup.sh.local
[2025-11-25 01:06:57] -rw-------. 1 boincer umatlas    989786 Nov 24 00:02 agis_schedconf.cvmfs.json
[2025-11-25 01:06:57] drwx------. 5 boincer umatlas      4096 Nov 24 00:03 pilot3
[2025-11-25 01:06:57] -rw-r--r--. 1 boincer umatlas       533 Nov 25 00:32 boinc_task_state.xml
[2025-11-25 01:06:57] -rw-------. 1 boincer umatlas 918574907 Nov 25 01:03 HITS.47556149._000605.pool.root.1
[2025-11-25 01:06:57] -rw-r--r--. 1 boincer umatlas      6614 Nov 25 01:03 init_data.xml
[2025-11-25 01:06:57] -rw-------. 1 boincer umatlas      1059 Nov 25 01:04 memory_monitor_summary.json
[2025-11-25 01:06:57] -rw-------. 1 boincer umatlas   1516227 Nov 25 01:05 agis_ddmendpoints.agis.ALL.json
[2025-11-25 01:06:57] -rw-------. 1 boincer umatlas   2662264 Nov 25 01:05 log.47556149._000605.job.log.tgz.1
[2025-11-25 01:06:57] -rw-------. 1 boincer umatlas      8635 Nov 25 01:05 heartbeat.json
[2025-11-25 01:06:57] -rw-------. 1 boincer umatlas        95 Nov 25 01:06 pilot_heartbeat.json
[2025-11-25 01:06:57] -rw-------. 1 boincer umatlas      4824 Nov 25 01:06 pilotlog.txt
[2025-11-25 01:06:57] -rw-------. 1 boincer umatlas  11731994 Nov 25 01:06 log.47556149._000605.job.log.1
[2025-11-25 01:06:57] -rw-------. 1 boincer umatlas       353 Nov 25 01:06 output.list
[2025-11-25 01:06:57] -rw-r--r--. 1 boincer umatlas       620 Nov 25 01:06 runtime_log
[2025-11-25 01:06:57] -rw-------. 1 boincer umatlas  14417920 Nov 25 01:06 result.tar.gz
[2025-11-25 01:06:57] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 01:06 boinc_mmap_file
[2025-11-25 01:06:57] -rw-r--r--. 1 boincer umatlas      9333 Nov 25 01:06 runtime_log.err
[2025-11-25 01:06:57] -rw-------. 1 boincer umatlas       658 Nov 25 01:06 BFJLDmSpwg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmw1JKDmX9kibn.diag
[2025-11-25 01:06:57] -rw-r--r--. 1 boincer umatlas        29 Nov 25 01:06 wrapper_checkpoint.txt
[2025-11-25 01:06:57] -rw-r--r--. 1 boincer umatlas     21897 Nov 25 01:06 stderr.txt
[2025-11-25 01:06:57] HITS file was successfully produced:
[2025-11-25 01:06:57] -rw-------. 1 boincer umatlas 918574907 Nov 25 01:03 shared/HITS.pool.root.1
[2025-11-25 01:06:57]  *** Contents of shared directory: ***
[2025-11-25 01:06:57] total 1313600
[2025-11-25 01:06:57] -rw-r--r--. 2 boincer umatlas 411515897 Nov 24 00:01 ATLAS.root_0
[2025-11-25 01:06:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:01 start_atlas.sh
[2025-11-25 01:06:57] -rw-r--r--. 2 boincer umatlas    590094 Nov 24 00:01 input.tar.gz
[2025-11-25 01:06:57] -rw-------. 1 boincer umatlas 918574907 Nov 25 01:03 HITS.pool.root.1
[2025-11-25 01:06:57] -rw-------. 1 boincer umatlas  14417920 Nov 25 01:06 result.tar.gz
01:06:59 (2207189): run_atlas exited; CPU time 346982.615552
01:06:59 (2207189): called boinc_finish(0)

</stderr_txt>
]]>

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