Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:37:16 (912568): wrapper (7.7.26015): starting
15:37:16 (912568): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 15:37:17] Arguments: --nthreads 8
[2025-11-24 15:37:17] Threads: 8
[2025-11-24 15:37:17] Checking for CVMFS
[2025-11-24 15:37:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 15:37:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 15:37:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 15:37:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 15:37:17] 2.13.2.0 8058 33447 302560 153258 0 453 22635874 40960000 12648 16776704 0 34364800 99.717 23948628 35377 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 15:37:17] CVMFS is ok
[2025-11-24 15:37:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 15:37:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 15:37:18] Further information can be found at the LHC@home message board.
[2025-11-24 15:37:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 15:37:18] Checking for apptainer binary...
[2025-11-24 15:37:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 15:37:18] Running /usr/bin/apptainer --version
[2025-11-24 15:37:18] apptainer version 1.4.4-1.el9
[2025-11-24 15:37:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 15:37:39] c-210-33-3.aglt2.org
[2025-11-24 15:37:39] apptainer works
[2025-11-24 15:37:39] Set ATHENA_PROC_NUMBER=8
[2025-11-24 15:37:39] Set ATHENA_CORE_NUMBER=8
[2025-11-24 15:37:39] Starting ATLAS job with PandaID=6891565270
[2025-11-24 15:37:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 03:47:25]  *** The last 200 lines of the pilot log: ***
[2025-11-26 03:47:26] 2025-11-26 08:46:12,290 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:47:26] 2025-11-26 08:46:13,457 | INFO     | time since job start (130080s) is within the limit (172800.0s)
[2025-11-26 03:47:26] 2025-11-26 08:46:14,794 | INFO     | monitor loop #7553: job 0:6891565270 is in state 'finished'
[2025-11-26 03:47:26] 2025-11-26 08:46:14,795 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:47:26] 2025-11-26 08:46:17,326 | INFO     | monitor loop #7554: job 0:6891565270 is in state 'finished'
[2025-11-26 03:47:26] 2025-11-26 08:46:17,329 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:47:26] 2025-11-26 08:46:17,725 | INFO     | PID=916326 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 03:47:26] 2025-11-26 08:46:17,725 | INFO     | .. there are 13 such processes running
[2025-11-26 03:47:26] 2025-11-26 08:46:18,682 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 03:47:26] 2025-11-26 08:46:18,701 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3036.5594285714283
[2025-11-26 03:47:26] 2025-11-26 08:46:18,726 | INFO     | time since job start (130085s) is within the limit (172800.0s)
[2025-11-26 03:47:26] 2025-11-26 08:46:18,747 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6891565270/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 03:47:26] 2025-11-26 08:46:18,747 | INFO     | extracted standard info from prmon json
[2025-11-26 03:47:26] 2025-11-26 08:46:18,748 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 03:47:26] 2025-11-26 08:46:18,748 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 03:47:26] 2025-11-26 08:46:19,025 | INFO     | fitting pss+swap vs Time
[2025-11-26 03:47:26] 2025-11-26 08:46:19,076 | INFO     | sum of square deviations: 3000674514519.3813
[2025-11-26 03:47:26] 2025-11-26 08:46:19,862 | INFO     | monitor loop #7555: job 0:6891565270 is in state 'finished'
[2025-11-26 03:47:26] 2025-11-26 08:46:19,862 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:47:26] 2025-11-26 08:46:19,912 | INFO     | sum of deviations: 1941663480859.236
[2025-11-26 03:47:26] 2025-11-26 08:46:19,955 | INFO     | mean x: 1764081729.9230409
[2025-11-26 03:47:26] 2025-11-26 08:46:19,955 | INFO     | mean y: 2970679.00140779
[2025-11-26 03:47:26] 2025-11-26 08:46:19,955 | INFO     | intersect: -1138523693.5700798
[2025-11-26 03:47:26] 2025-11-26 08:46:19,957 | INFO     | chi2: 29.001545333720138
[2025-11-26 03:47:26] 2025-11-26 08:46:19,997 | INFO     | sum of square deviations: 2979605810811.0557
[2025-11-26 03:47:26] 2025-11-26 08:46:20,813 | INFO     | time since job start (130087s) is within the limit (172800.0s)
[2025-11-26 03:47:26] 2025-11-26 08:46:20,905 | INFO     | sum of deviations: 2749349814429.329
[2025-11-26 03:47:26] 2025-11-26 08:46:20,906 | INFO     | mean x: 1764081577.436971
[2025-11-26 03:47:26] 2025-11-26 08:46:20,906 | INFO     | mean y: 2976523.8123236126
[2025-11-26 03:47:26] 2025-11-26 08:46:20,906 | INFO     | intersect: -1624781530.6144571
[2025-11-26 03:47:26] 2025-11-26 08:46:20,951 | INFO     | chi2: 25.08976829545571
[2025-11-26 03:47:26] 2025-11-26 08:46:20,952 | INFO     | current chi2=25.08976829545571 (change=13.488167589870462 %)
[2025-11-26 03:47:26] 2025-11-26 08:46:20,952 | INFO     | right removable region: 2125
[2025-11-26 03:47:26] 2025-11-26 08:46:20,998 | INFO     | sum of square deviations: 2979598111391.0474
[2025-11-26 03:47:26] 2025-11-26 08:46:22,072 | INFO     | sum of deviations: 1264118144763.8635
[2025-11-26 03:47:26] 2025-11-26 08:46:22,072 | INFO     | mean x: 1764081882.436971
[2025-11-26 03:47:26] 2025-11-26 08:46:22,072 | INFO     | mean y: 2975580.327375353
[2025-11-26 03:47:26] 2025-11-26 08:46:22,072 | INFO     | intersect: -745450158.000359
[2025-11-26 03:47:26] 2025-11-26 08:46:22,118 | INFO     | chi2: 26.524994581911077
[2025-11-26 03:47:26] 2025-11-26 08:46:22,118 | INFO     | current chi2=26.524994581911077 (change=8.539375137812302 %)
[2025-11-26 03:47:26] 2025-11-26 08:46:22,118 | INFO     | left removable region: 10
[2025-11-26 03:47:26] 2025-11-26 08:46:22,158 | INFO     | sum of square deviations: 2933590116439.998
[2025-11-26 03:47:26] 2025-11-26 08:46:22,439 | INFO     | monitor loop #7556: job 0:6891565270 is in state 'finished'
[2025-11-26 03:47:26] 2025-11-26 08:46:22,439 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:47:26] 2025-11-26 08:46:22,874 | INFO     | time since job start (130089s) is within the limit (172800.0s)
[2025-11-26 03:47:26] 2025-11-26 08:46:23,282 | INFO     | sum of deviations: 2035105743641.2842
[2025-11-26 03:47:26] 2025-11-26 08:46:23,282 | INFO     | mean x: 1764081851.9565012
[2025-11-26 03:47:26] 2025-11-26 08:46:23,282 | INFO     | mean y: 2983692.524822695
[2025-11-26 03:47:26] 2025-11-26 08:46:23,283 | INFO     | intersect: -1220804555.550787
[2025-11-26 03:47:26] 2025-11-26 08:46:23,349 | INFO     | chi2: 21.9388829512222
[2025-11-26 03:47:26] 2025-11-26 08:46:23,349 | INFO     | current memory leak: 0.69 B/s (using 2115 data points, chi2=21.94)
[2025-11-26 03:47:26] 2025-11-26 08:46:23,351 | INFO     | could have reported an average CPU frequency of 2751 MHz (74 samples)
[2025-11-26 03:47:26] 2025-11-26 08:46:23,351 | INFO     | ..............................
[2025-11-26 03:47:26] 2025-11-26 08:46:23,416 | INFO     | . Timing measurements:
[2025-11-26 03:47:26] 2025-11-26 08:46:23,416 | INFO     | . get job = 0 s
[2025-11-26 03:47:26] 2025-11-26 08:46:23,416 | INFO     | . initial setup = 6 s
[2025-11-26 03:47:26] 2025-11-26 08:46:23,416 | INFO     | . payload setup = 16 s
[2025-11-26 03:47:26] 2025-11-26 08:46:23,416 | INFO     | . stage-in = 0 s
[2025-11-26 03:47:26] 2025-11-26 08:46:23,416 | INFO     | . payload execution = 129981 s
[2025-11-26 03:47:26] 2025-11-26 08:46:23,416 | INFO     | . stage-out = 11 s
[2025-11-26 03:47:26] 2025-11-26 08:46:23,416 | INFO     | . log creation = 4 s
[2025-11-26 03:47:26] 2025-11-26 08:46:23,416 | INFO     | ..............................
[2025-11-26 03:47:26] 2025-11-26 08:46:24,945 | INFO     | time since job start (130091s) is within the limit (172800.0s)
[2025-11-26 03:47:26] 2025-11-26 08:46:25,083 | INFO     | 
[2025-11-26 03:47:26] 2025-11-26 08:46:25,083 | INFO     | job summary report
[2025-11-26 03:47:26] 2025-11-26 08:46:25,083 | INFO     | --------------------------------------------------
[2025-11-26 03:47:26] 2025-11-26 08:46:25,083 | INFO     | PanDA job id: 6891565270
[2025-11-26 03:47:26] 2025-11-26 08:46:25,083 | INFO     | task id: 47493068
[2025-11-26 03:47:26] 2025-11-26 08:46:25,083 | INFO     | errors: (none)
[2025-11-26 03:47:26] 2025-11-26 08:46:25,083 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 03:47:26] 2025-11-26 08:46:25,083 | INFO     | pilot state: finished 
[2025-11-26 03:47:26] 2025-11-26 08:46:25,083 | INFO     | transexitcode: 0
[2025-11-26 03:47:26] 2025-11-26 08:46:25,083 | INFO     | exeerrorcode: 0
[2025-11-26 03:47:26] 2025-11-26 08:46:25,083 | INFO     | exeerrordiag: 
[2025-11-26 03:47:26] 2025-11-26 08:46:25,083 | INFO     | exitcode: 0
[2025-11-26 03:47:26] 2025-11-26 08:46:25,084 | INFO     | exitmsg: OK
[2025-11-26 03:47:26] 2025-11-26 08:46:25,084 | INFO     | cpuconsumptiontime: 255593 s
[2025-11-26 03:47:26] 2025-11-26 08:46:25,084 | INFO     | nevents: 1000
[2025-11-26 03:47:26] 2025-11-26 08:46:25,084 | INFO     | neventsw: 0
[2025-11-26 03:47:26] 2025-11-26 08:46:25,084 | INFO     | pid: 922786
[2025-11-26 03:47:26] 2025-11-26 08:46:25,084 | INFO     | pgrp: 922786
[2025-11-26 03:47:26] 2025-11-26 08:46:25,084 | INFO     | corecount: 8
[2025-11-26 03:47:26] 2025-11-26 08:46:25,084 | INFO     | event service: False
[2025-11-26 03:47:26] 2025-11-26 08:46:25,084 | INFO     | sizes: {0: 2284128, 1: 2284156, 2: 2284355, 13: 2284355, 19: 2284673, 24: 2284701, 129999: 2368605, 130000: 2368604, 130011: 2377715, 130056: 2377905}
[2025-11-26 03:47:26] 2025-11-26 08:46:25,084 | INFO     | --------------------------------------------------
[2025-11-26 03:47:26] 2025-11-26 08:46:25,084 | INFO     | 
[2025-11-26 03:47:26] 2025-11-26 08:46:25,084 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 03:47:26] 2025-11-26 08:46:25,294 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 03:47:26] 2025-11-26 08:46:25,294 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 03:47:26] 2025-11-26 08:46:25,294 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 03:47:26] 2025-11-26 08:46:25,294 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 03:47:26] 2025-11-26 08:46:25,294 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 03:47:26] 2025-11-26 08:46:25,294 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 03:47:26] 2025-11-26 08:46:25,294 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 03:47:26] 2025-11-26 08:46:25,294 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 03:47:26] 2025-11-26 08:46:25,295 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 03:47:26] 2025-11-26 08:46:25,295 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 03:47:26] 2025-11-26 08:46:25,295 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 03:47:26] 2025-11-26 08:46:25,295 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 03:47:26] 2025-11-26 08:46:25,295 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 03:47:26] 2025-11-26 08:46:25,295 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 03:47:26] 2025-11-26 08:46:25,295 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 03:47:26] 2025-11-26 08:46:25,295 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 03:47:26] 2025-11-26 08:46:25,295 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 03:47:26] 2025-11-26 08:46:25,295 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 03:47:26] 2025-11-26 08:46:25,295 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 03:47:26] 2025-11-26 08:46:25,295 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 03:47:26] 2025-11-26 08:46:25,296 | INFO     | job 6891565270 has completed (purged errors)
[2025-11-26 03:47:26] 2025-11-26 08:46:25,296 | INFO     | overall cleanup function is called
[2025-11-26 03:47:26] 2025-11-26 08:46:26,321 | INFO     | --- collectZombieJob: --- 10, [922786]
[2025-11-26 03:47:26] 2025-11-26 08:46:26,322 | INFO     | zombie collector waiting for pid 922786
[2025-11-26 03:47:26] 2025-11-26 08:46:26,322 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 03:47:26] 2025-11-26 08:46:26,322 | INFO     | collected zombie processes
[2025-11-26 03:47:26] 2025-11-26 08:46:26,322 | INFO     | will attempt to kill all subprocesses of pid=922786
[2025-11-26 03:47:26] 2025-11-26 08:46:26,842 | INFO     | process IDs to be killed: [922786] (in reverse order)
[2025-11-26 03:47:26] 2025-11-26 08:46:27,890 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 03:47:26] 2025-11-26 08:46:27,890 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 03:47:26] 2025-11-26 08:46:27,949 | INFO     | did not find any defunct processes belonging to 922786
[2025-11-26 03:47:26] 2025-11-26 08:46:27,990 | INFO     | did not find any defunct processes belonging to 922786
[2025-11-26 03:47:26] 2025-11-26 08:46:28,003 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 03:47:26] 2025-11-26 08:46:28,004 | INFO     | ready for new job
[2025-11-26 03:47:26] 2025-11-26 08:46:28,004 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 03:47:26] 2025-11-26 08:46:28,034 | INFO     | ***************************************
[2025-11-26 03:47:26] 2025-11-26 08:46:28,035 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 03:47:26] 2025-11-26 08:46:28,035 | INFO     | ***************************************
[2025-11-26 03:47:26] 2025-11-26 08:46:28,036 | INFO     | 
[2025-11-26 03:47:26] 2025-11-26 08:46:28,054 | INFO     | architecture information:
[2025-11-26 03:47:26] 2025-11-26 08:46:28,067 | INFO     | executing command: cat /etc/os-release
[2025-11-26 03:47:26] 2025-11-26 08:46:28,134 | INFO     | cat /etc/os-release:
[2025-11-26 03:47:26] NAME="CentOS Linux"
[2025-11-26 03:47:26] VERSION="7 (Core)"
[2025-11-26 03:47:26] ID="centos"
[2025-11-26 03:47:26] ID_LIKE="rhel fedora"
[2025-11-26 03:47:26] VERSION_ID="7"
[2025-11-26 03:47:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 03:47:26] ANSI_COLOR="0;31"
[2025-11-26 03:47:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 03:47:26] HOME_URL="https://www.centos.org/"
[2025-11-26 03:47:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 03:47:26] 
[2025-11-26 03:47:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 03:47:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 03:47:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 03:47:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 03:47:26] 
[2025-11-26 03:47:26] 2025-11-26 08:46:28,134 | INFO     | ***************************************
[2025-11-26 03:47:26] 2025-11-26 08:46:28,638 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 03:47:26] 2025-11-26 08:46:28,704 | INFO     | sufficient remaining disk space (66961014784 B)
[2025-11-26 03:47:26] 2025-11-26 08:46:28,704 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 03:47:26] 2025-11-26 08:46:28,705 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 03:47:26] 2025-11-26 08:46:28,705 | INFO     | update_server=False
[2025-11-26 03:47:26] 2025-11-26 08:46:28,708 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 03:47:26] 2025-11-26 08:46:28,711 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 03:47:26] 2025-11-26 08:46:28,711 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 03:47:26] 2025-11-26 08:46:28,711 | INFO     | aborting loop
[2025-11-26 03:47:26] 2025-11-26 08:46:28,711 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 03:47:26] 2025-11-26 08:46:29,012 | INFO     | all job control threads have been joined
[2025-11-26 03:47:26] 2025-11-26 08:46:29,108 | INFO     | all data control threads have been joined
[2025-11-26 03:47:26] 2025-11-26 08:46:29,465 | INFO     | all payload control threads have been joined
[2025-11-26 03:47:26] 2025-11-26 08:46:29,714 | INFO     | [job] retrieve thread has finished
[2025-11-26 03:47:26] 2025-11-26 08:46:29,717 | INFO     | [job] job monitor thread has finished
[2025-11-26 03:47:26] 2025-11-26 08:46:30,023 | INFO     | [job] control thread has finished
[2025-11-26 03:47:26] 2025-11-26 08:46:30,098 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 03:47:26] 2025-11-26 08:46:30,115 | INFO     | [data] control thread has finished
[2025-11-26 03:47:26] 2025-11-26 08:46:30,413 | INFO     | [payload] failed_post thread has finished
[2025-11-26 03:47:26] 2025-11-26 08:46:30,414 | INFO     | [payload] validate_post thread has finished
[2025-11-26 03:47:26] 2025-11-26 08:46:30,470 | INFO     | [payload] control thread has finished
[2025-11-26 03:47:26] 2025-11-26 08:46:30,601 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 03:47:26] 2025-11-26 08:46:30,717 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 03:47:26] 2025-11-26 08:46:30,718 | INFO     | [data] copytool_in thread has finished
[2025-11-26 03:47:26] 2025-11-26 08:46:30,718 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 03:47:26] 2025-11-26 08:46:30,719 | INFO     | [data] copytool_out thread has finished
[2025-11-26 03:47:26] 2025-11-26 08:46:30,719 | INFO     | [job] validate thread has finished
[2025-11-26 03:47:26] 2025-11-26 08:46:31,106 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 03:47:26] 2025-11-26 08:46:31,107 | INFO     | [job] queue monitor thread has finished
[2025-11-26 03:47:26] 2025-11-26 08:46:32,721 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 03:47:26] 2025-11-26 08:46:56,960 | INFO     | 130099s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-26 03:47:26] 2025-11-26 08:47:02,432 | INFO     | PID=916326 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 03:47:26] 2025-11-26 08:47:02,439 | INFO     | .. there are 13 such processes running
[2025-11-26 03:47:26] 2025-11-26 08:47:02,440 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 03:47:26] 2025-11-26 08:47:02,440 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 03:47:26] 2025-11-26 08:47:02,440 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 03:47:26] 2025-11-26 08:47:16,891 | INFO     | [monitor] cgroup control has ended
[2025-11-26 03:47:26] 2025-11-26 08:47:17,464 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140214238160704)>', '<ExcThread(monitor, started 140213594597120)>']
[2025-11-26 03:47:26] 2025-11-26 08:47:17,540 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 03:47:26] 2025-11-26 08:47:17,541 | INFO     | [monitor] control thread has ended
[2025-11-26 03:47:26] 2025-11-26 08:47:22,490 | INFO     | all workflow threads have been joined
[2025-11-26 03:47:26] 2025-11-26 08:47:22,491 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 03:47:26] 2025-11-26 08:47:22,491 | INFO     | traces error code: 0
[2025-11-26 03:47:26] 2025-11-26 08:47:22,491 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 03:47:26] 2025-11-26 08:47:23,851 [wrapper] ==== pilot stdout END ====
[2025-11-26 03:47:26] 2025-11-26 08:47:23,908 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 03:47:26] 2025-11-26 08:47:23,961 [wrapper] pilotpid: 916326
[2025-11-26 03:47:26] 2025-11-26 08:47:24,061 [wrapper] Pilot exit status: 0
[2025-11-26 03:47:26] 2025-11-26 08:47:24,252 [wrapper] pandaids: 6891565270
[2025-11-26 03:47:26] 2025-11-26 08:47:24,538 [wrapper] cleanup supervisor_pilot 4093825 916327
[2025-11-26 03:47:26] 2025-11-26 08:47:24,553 [wrapper] Test setup, not cleaning
[2025-11-26 03:47:26] 2025-11-26 08:47:24,598 [wrapper] apfmon messages muted
[2025-11-26 03:47:26] 2025-11-26 08:47:24,618 [wrapper] ==== wrapper stdout END ====
[2025-11-26 03:47:26] 2025-11-26 08:47:24,663 [wrapper] ==== wrapper stderr END ====
[2025-11-26 03:47:26]  *** Error codes and diagnostics ***
[2025-11-26 03:47:26]     "exeErrorCode": 0,
[2025-11-26 03:47:26]     "exeErrorDiag": "",
[2025-11-26 03:47:26]     "pilotErrorCode": 0,
[2025-11-26 03:47:26]     "pilotErrorDiag": "",
[2025-11-26 03:47:26]  *** Listing of results directory ***
[2025-11-26 03:47:26] total 1333892
[2025-11-26 03:47:26] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 10:15 pilot3.tar.gz
[2025-11-26 03:47:26] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 10:29 queuedata.json
[2025-11-26 03:47:26] -rwx------. 1 boincer umatlas     36292 Nov 18 10:30 runpilot2-wrapper.sh
[2025-11-26 03:47:26] -rw-r--r--. 1 boincer umatlas       100 Nov 24 15:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 03:47:26] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 15:37 run_atlas
[2025-11-26 03:47:26] -rw-r--r--. 1 boincer umatlas       105 Nov 24 15:37 job.xml
[2025-11-26 03:47:26] -rw-r--r--. 2 boincer umatlas 409373983 Nov 24 15:37 EVNT.47493065._000142.pool.root.1
[2025-11-26 03:47:26] -rw-r--r--. 2 boincer umatlas     15120 Nov 24 15:37 start_atlas.sh
[2025-11-26 03:47:26] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 15:37 shared
[2025-11-26 03:47:26] -rw-r--r--. 2 boincer umatlas    590100 Nov 24 15:37 input.tar.gz
[2025-11-26 03:47:26] -rw-r--r--. 1 boincer umatlas         0 Nov 24 15:37 boinc_lockfile
[2025-11-26 03:47:26] -rw-r--r--. 1 boincer umatlas      2773 Nov 24 15:37 pandaJob.out
[2025-11-26 03:47:26] -rw-------. 1 boincer umatlas    991801 Nov 24 15:38 agis_schedconf.cvmfs.json
[2025-11-26 03:47:26] drwx------. 5 boincer umatlas      4096 Nov 24 15:38 pilot3
[2025-11-26 03:47:26] -rw-r--r--. 1 boincer umatlas       534 Nov 26 02:46 boinc_task_state.xml
[2025-11-26 03:47:26] -rw-------. 1 boincer umatlas 914827787 Nov 26 03:41 HITS.47493068._001416.pool.root.1
[2025-11-26 03:47:26] -rw-------. 1 boincer umatlas      1072 Nov 26 03:45 memory_monitor_summary.json
[2025-11-26 03:47:26] -rw-r--r--. 1 boincer umatlas      6845 Nov 26 03:45 init_data.xml
[2025-11-26 03:47:26] -rw-------. 1 boincer umatlas   1516240 Nov 26 03:45 agis_ddmendpoints.agis.ALL.json
[2025-11-26 03:47:26] -rw-------. 1 boincer umatlas   2906174 Nov 26 03:45 log.47493068._001416.job.log.tgz.1
[2025-11-26 03:47:26] -rw-------. 1 boincer umatlas        95 Nov 26 03:46 pilot_heartbeat.json
[2025-11-26 03:47:26] -rw-------. 1 boincer umatlas      8662 Nov 26 03:46 heartbeat.json
[2025-11-26 03:47:26] -rw-r--r--. 1 boincer umatlas        30 Nov 26 03:47 wrapper_checkpoint.txt
[2025-11-26 03:47:26] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 03:47 boinc_mmap_file
[2025-11-26 03:47:26] -rw-------. 1 boincer umatlas      4940 Nov 26 03:47 pilotlog.txt
[2025-11-26 03:47:26] -rw-------. 1 boincer umatlas  15982665 Nov 26 03:47 log.47493068._001416.job.log.1
[2025-11-26 03:47:26] -rw-------. 1 boincer umatlas       353 Nov 26 03:47 output.list
[2025-11-26 03:47:26] -rw-r--r--. 1 boincer umatlas       620 Nov 26 03:47 runtime_log
[2025-11-26 03:47:26] -rw-------. 1 boincer umatlas  18913280 Nov 26 03:47 result.tar.gz
[2025-11-26 03:47:26] -rw-r--r--. 1 boincer umatlas      8715 Nov 26 03:47 runtime_log.err
[2025-11-26 03:47:26] -rw-------. 1 boincer umatlas       671 Nov 26 03:47 btrNDmdqcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmvTFKDm4Cw2Yn.diag
[2025-11-26 03:47:26] -rw-r--r--. 1 boincer umatlas     21897 Nov 26 03:47 stderr.txt
[2025-11-26 03:47:26] HITS file was successfully produced:
[2025-11-26 03:47:26] -rw-------. 1 boincer umatlas 914827787 Nov 26 03:41 shared/HITS.pool.root.1
[2025-11-26 03:47:26]  *** Contents of shared directory: ***
[2025-11-26 03:47:26] total 1312244
[2025-11-26 03:47:26] -rw-r--r--. 2 boincer umatlas 409373983 Nov 24 15:37 ATLAS.root_0
[2025-11-26 03:47:26] -rw-r--r--. 2 boincer umatlas     15120 Nov 24 15:37 start_atlas.sh
[2025-11-26 03:47:26] -rw-r--r--. 2 boincer umatlas    590100 Nov 24 15:37 input.tar.gz
[2025-11-26 03:47:26] -rw-------. 1 boincer umatlas 914827787 Nov 26 03:41 HITS.pool.root.1
[2025-11-26 03:47:26] -rw-------. 1 boincer umatlas  18913280 Nov 26 03:47 result.tar.gz
03:47:27 (912568): run_atlas exited; CPU time 257668.373811
03:47:27 (912568): called boinc_finish(0)

</stderr_txt>
]]>

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