Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:46:27 (901): wrapper (7.7.26015): starting
00:46:27 (901): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 00:46:27] Arguments: --nthreads 8
[2025-11-23 00:46:27] Threads: 8
[2025-11-23 00:46:27] Checking for CVMFS
[2025-11-23 00:46:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:46:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:46:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:46:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:46:27] 2.11.2.0 28705 113121 138744 153198 1 82 9817151 18432001 1885 130560 0 81925897 99.974 4848423 31970 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 00:46:27] CVMFS is ok
[2025-11-23 00:46:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:46:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 00:46:27] Further information can be found at the LHC@home message board.
[2025-11-23 00:46:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:46:27] Checking for apptainer binary...
[2025-11-23 00:46:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:46:27] Running /usr/bin/apptainer --version
[2025-11-23 00:46:27] apptainer version 1.3.2-1.el7
[2025-11-23 00:46:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:46:28] c-206-27.aglt2.org
[2025-11-23 00:46:28] apptainer works
[2025-11-23 00:46:28] Set ATHENA_PROC_NUMBER=8
[2025-11-23 00:46:28] Set ATHENA_CORE_NUMBER=8
[2025-11-23 00:46:28] Starting ATLAS job with PandaID=6895337348
[2025-11-23 00:46:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
08:13:15 (19048): wrapper (7.7.26015): starting
08:13:15 (19048): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 08:13:15] Arguments: --nthreads 8
[2025-11-23 08:13:15] Threads: 8
[2025-11-23 08:13:15] This job has been restarted, cleaning up previous attempt
[2025-11-23 08:13:15] Checking for CVMFS
[2025-11-23 08:13:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 08:13:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 08:13:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 08:13:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 08:13:16] 2.11.2.0 28705 113568 138056 153209 2 56 9868262 18432000 1 130560 0 82443993 99.974 4862983 31980 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 08:13:16] CVMFS is ok
[2025-11-23 08:13:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 08:13:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 08:13:16] Further information can be found at the LHC@home message board.
[2025-11-23 08:13:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 08:13:16] Checking for apptainer binary...
[2025-11-23 08:13:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 08:13:16] Running /usr/bin/apptainer --version
[2025-11-23 08:13:16] apptainer version 1.3.2-1.el7
[2025-11-23 08:13:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 08:13:17] c-206-27.aglt2.org
[2025-11-23 08:13:17] apptainer works
[2025-11-23 08:13:17] Set ATHENA_PROC_NUMBER=8
[2025-11-23 08:13:17] Set ATHENA_CORE_NUMBER=8
[2025-11-23 08:13:17] Starting ATLAS job with PandaID=6895337348
[2025-11-23 08:13:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 03:12:31]  *** The last 200 lines of the pilot log: ***
[2025-11-24 03:12:31] 2025-11-24 08:11:47,621 | INFO     | time since job start (68296s) is within the limit (172800.0s)
[2025-11-24 03:12:31] 2025-11-24 08:11:48,404 | INFO     | monitor loop #4883: job 0:6895337348 is in state 'finished'
[2025-11-24 03:12:31] 2025-11-24 08:11:48,404 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:12:31] 2025-11-24 08:11:49,249 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 03:12:31] 2025-11-24 08:11:49,252 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2483.4583333333335
[2025-11-24 03:12:31] 2025-11-24 08:11:49,255 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895337348/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 03:12:31] 2025-11-24 08:11:49,256 | INFO     | extracted standard info from prmon json
[2025-11-24 03:12:31] 2025-11-24 08:11:49,256 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 03:12:31] 2025-11-24 08:11:49,256 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 03:12:31] 2025-11-24 08:11:49,272 | INFO     | fitting pss+swap vs Time
[2025-11-24 03:12:31] 2025-11-24 08:11:49,273 | INFO     | sum of square deviations: 434477387087.3143
[2025-11-24 03:12:31] 2025-11-24 08:11:49,295 | INFO     | sum of deviations: 2437122865643.979
[2025-11-24 03:12:31] 2025-11-24 08:11:49,295 | INFO     | mean x: 1763937737.7935658
[2025-11-24 03:12:31] 2025-11-24 08:11:49,295 | INFO     | mean y: 2882590.4414655943
[2025-11-24 03:12:31] 2025-11-24 08:11:49,295 | INFO     | intersect: -9891609325.854935
[2025-11-24 03:12:31] 2025-11-24 08:11:49,296 | INFO     | chi2: 4.675315466719391
[2025-11-24 03:12:31] 2025-11-24 08:11:49,297 | INFO     | sum of square deviations: 428679530606.65045
[2025-11-24 03:12:31] 2025-11-24 08:11:49,320 | INFO     | sum of deviations: 2725431983229.829
[2025-11-24 03:12:31] 2025-11-24 08:11:49,320 | INFO     | mean x: 1763937585.2971275
[2025-11-24 03:12:31] 2025-11-24 08:11:49,320 | INFO     | mean y: 2890168.227109515
[2025-11-24 03:12:31] 2025-11-24 08:11:49,320 | INFO     | intersect: -11211762195.94482
[2025-11-24 03:12:31] 2025-11-24 08:11:49,321 | INFO     | chi2: 2.565844733995275
[2025-11-24 03:12:31] 2025-11-24 08:11:49,321 | INFO     | current chi2=2.565844733995275 (change=45.11932398444771 %)
[2025-11-24 03:12:31] 2025-11-24 08:11:49,322 | INFO     | sum of square deviations: 422933353510.15894
[2025-11-24 03:12:31] 2025-11-24 08:11:49,347 | INFO     | sum of deviations: 2751507486569.114
[2025-11-24 03:12:31] 2025-11-24 08:11:49,347 | INFO     | mean x: 1763937432.798918
[2025-11-24 03:12:31] 2025-11-24 08:11:49,347 | INFO     | mean y: 2890857.2605951307
[2025-11-24 03:12:31] 2025-11-24 08:11:49,347 | INFO     | intersect: -11472881890.156794
[2025-11-24 03:12:31] 2025-11-24 08:11:49,348 | INFO     | chi2: 2.4557603882107744
[2025-11-24 03:12:31] 2025-11-24 08:11:49,348 | INFO     | current chi2=2.4557603882107744 (change=4.29037440675876 %)
[2025-11-24 03:12:31] 2025-11-24 08:11:49,349 | INFO     | right removable region: 1108
[2025-11-24 03:12:31] 2025-11-24 08:11:49,350 | INFO     | sum of square deviations: 428679056942.2444
[2025-11-24 03:12:31] 2025-11-24 08:11:49,386 | INFO     | sum of deviations: 2157420532134.0742
[2025-11-24 03:12:31] 2025-11-24 08:11:49,386 | INFO     | mean x: 1763937890.2962298
[2025-11-24 03:12:31] 2025-11-24 08:11:49,386 | INFO     | mean y: 2889937.0179533213
[2025-11-24 03:12:31] 2025-11-24 08:11:49,387 | INFO     | intersect: -8874510907.052364
[2025-11-24 03:12:31] 2025-11-24 08:11:49,388 | INFO     | chi2: 2.679472551909704
[2025-11-24 03:12:31] 2025-11-24 08:11:49,388 | INFO     | current chi2=2.679472551909704 (change=42.68894642547286 %)
[2025-11-24 03:12:31] 2025-11-24 08:11:49,390 | INFO     | sum of square deviations: 422932745585.9436
[2025-11-24 03:12:31] 2025-11-24 08:11:49,429 | INFO     | sum of deviations: 2054816479606.539
[2025-11-24 03:12:31] 2025-11-24 08:11:49,429 | INFO     | mean x: 1763938042.796213
[2025-11-24 03:12:31] 2025-11-24 08:11:49,429 | INFO     | mean y: 2892659.8431018936
[2025-11-24 03:12:31] 2025-11-24 08:11:49,430 | INFO     | intersect: -8567190875.11936
[2025-11-24 03:12:31] 2025-11-24 08:11:49,430 | INFO     | chi2: 2.5572829762678806
[2025-11-24 03:12:31] 2025-11-24 08:11:49,431 | INFO     | current chi2=2.5572829762678806 (change=4.560210014270782 %)
[2025-11-24 03:12:31] 2025-11-24 08:11:49,431 | INFO     | left removable region: 20
[2025-11-24 03:12:31] 2025-11-24 08:11:49,432 | INFO     | sum of square deviations: 399359395313.9184
[2025-11-24 03:12:31] 2025-11-24 08:11:49,463 | INFO     | sum of deviations: 2213695872426.3276
[2025-11-24 03:12:31] 2025-11-24 08:11:49,463 | INFO     | mean x: 1763938012.2987132
[2025-11-24 03:12:31] 2025-11-24 08:11:49,464 | INFO     | mean y: 2905132.734375
[2025-11-24 03:12:31] 2025-11-24 08:11:49,464 | INFO     | intersect: -9774809734.777777
[2025-11-24 03:12:31] 2025-11-24 08:11:49,465 | INFO     | chi2: 0.23385499328672738
[2025-11-24 03:12:31] 2025-11-24 08:11:49,466 | INFO     | current memory leak: 5.54 B/s (using 1088 data points, chi2=0.23)
[2025-11-24 03:12:31] 2025-11-24 08:11:49,467 | INFO     | could have reported an average CPU frequency of 2578 MHz (41 samples)
[2025-11-24 03:12:31] 2025-11-24 08:11:49,467 | INFO     | ..............................
[2025-11-24 03:12:31] 2025-11-24 08:11:49,467 | INFO     | . Timing measurements:
[2025-11-24 03:12:31] 2025-11-24 08:11:49,467 | INFO     | . get job = 0 s
[2025-11-24 03:12:31] 2025-11-24 08:11:49,467 | INFO     | . initial setup = 2 s
[2025-11-24 03:12:31] 2025-11-24 08:11:49,467 | INFO     | . payload setup = 7 s
[2025-11-24 03:12:31] 2025-11-24 08:11:49,467 | INFO     | . stage-in = 0 s
[2025-11-24 03:12:31] 2025-11-24 08:11:49,467 | INFO     | . payload execution = 68262 s
[2025-11-24 03:12:31] 2025-11-24 08:11:49,467 | INFO     | . stage-out = 4 s
[2025-11-24 03:12:31] 2025-11-24 08:11:49,467 | INFO     | . log creation = 0 s
[2025-11-24 03:12:31] 2025-11-24 08:11:49,468 | INFO     | ..............................
[2025-11-24 03:12:31] 2025-11-24 08:11:49,589 | INFO     | 
[2025-11-24 03:12:31] 2025-11-24 08:11:49,590 | INFO     | job summary report
[2025-11-24 03:12:31] 2025-11-24 08:11:49,590 | INFO     | --------------------------------------------------
[2025-11-24 03:12:31] 2025-11-24 08:11:49,590 | INFO     | PanDA job id: 6895337348
[2025-11-24 03:12:31] 2025-11-24 08:11:49,590 | INFO     | task id: 47556137
[2025-11-24 03:12:31] 2025-11-24 08:11:49,590 | INFO     | errors: (none)
[2025-11-24 03:12:31] 2025-11-24 08:11:49,590 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 03:12:31] 2025-11-24 08:11:49,591 | INFO     | pilot state: finished 
[2025-11-24 03:12:31] 2025-11-24 08:11:49,591 | INFO     | transexitcode: 0
[2025-11-24 03:12:31] 2025-11-24 08:11:49,591 | INFO     | exeerrorcode: 0
[2025-11-24 03:12:31] 2025-11-24 08:11:49,591 | INFO     | exeerrordiag: 
[2025-11-24 03:12:31] 2025-11-24 08:11:49,591 | INFO     | exitcode: 0
[2025-11-24 03:12:31] 2025-11-24 08:11:49,591 | INFO     | exitmsg: OK
[2025-11-24 03:12:31] 2025-11-24 08:11:49,592 | INFO     | cpuconsumptiontime: 532353 s
[2025-11-24 03:12:31] 2025-11-24 08:11:49,592 | INFO     | nevents: 1000
[2025-11-24 03:12:31] 2025-11-24 08:11:49,592 | INFO     | neventsw: 0
[2025-11-24 03:12:31] 2025-11-24 08:11:49,592 | INFO     | pid: 17107
[2025-11-24 03:12:31] 2025-11-24 08:11:49,592 | INFO     | pgrp: 17107
[2025-11-24 03:12:31] 2025-11-24 08:11:49,592 | INFO     | corecount: 8
[2025-11-24 03:12:31] 2025-11-24 08:11:49,593 | INFO     | event service: False
[2025-11-24 03:12:31] 2025-11-24 08:11:49,593 | INFO     | sizes: {0: 2298585, 1: 2298784, 5: 2299046, 11: 2299102, 68272: 2354941, 68273: 2354940, 68278: 2364174, 68283: 2364460}
[2025-11-24 03:12:31] 2025-11-24 08:11:49,593 | INFO     | --------------------------------------------------
[2025-11-24 03:12:31] 2025-11-24 08:11:49,593 | INFO     | 
[2025-11-24 03:12:31] 2025-11-24 08:11:49,593 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-24 03:12:31] 2025-11-24 08:11:49,621 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 03:12:31] 2025-11-24 08:11:49,621 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 03:12:31] 2025-11-24 08:11:49,622 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 03:12:31] 2025-11-24 08:11:49,622 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 03:12:31] 2025-11-24 08:11:49,622 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 03:12:31] 2025-11-24 08:11:49,622 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 03:12:31] 2025-11-24 08:11:49,622 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 03:12:31] 2025-11-24 08:11:49,622 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 03:12:31] 2025-11-24 08:11:49,622 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 03:12:31] 2025-11-24 08:11:49,622 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 03:12:31] 2025-11-24 08:11:49,622 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 03:12:31] 2025-11-24 08:11:49,623 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 03:12:31] 2025-11-24 08:11:49,623 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 03:12:31] 2025-11-24 08:11:49,623 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 03:12:31] 2025-11-24 08:11:49,623 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 03:12:31] 2025-11-24 08:11:49,623 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 03:12:31] 2025-11-24 08:11:49,623 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 03:12:31] 2025-11-24 08:11:49,623 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 03:12:31] 2025-11-24 08:11:49,623 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 03:12:31] 2025-11-24 08:11:49,623 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 03:12:31] 2025-11-24 08:11:49,624 | INFO     | job 6895337348 has completed (purged errors)
[2025-11-24 03:12:31] 2025-11-24 08:11:49,624 | INFO     | overall cleanup function is called
[2025-11-24 03:12:31] 2025-11-24 08:11:50,638 | INFO     | --- collectZombieJob: --- 10, [17107]
[2025-11-24 03:12:31] 2025-11-24 08:11:50,638 | INFO     | zombie collector waiting for pid 17107
[2025-11-24 03:12:31] 2025-11-24 08:11:50,639 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 03:12:31] 2025-11-24 08:11:50,639 | INFO     | collected zombie processes
[2025-11-24 03:12:31] 2025-11-24 08:11:50,639 | INFO     | will attempt to kill all subprocesses of pid=17107
[2025-11-24 03:12:31] 2025-11-24 08:11:50,808 | INFO     | process IDs to be killed: [17107] (in reverse order)
[2025-11-24 03:12:31] 2025-11-24 08:11:50,871 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 03:12:31] 2025-11-24 08:11:50,871 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 03:12:31] 2025-11-24 08:11:50,877 | INFO     | did not find any defunct processes belonging to 17107
[2025-11-24 03:12:31] 2025-11-24 08:11:50,882 | INFO     | did not find any defunct processes belonging to 17107
[2025-11-24 03:12:31] 2025-11-24 08:11:50,884 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 03:12:31] 2025-11-24 08:11:50,884 | INFO     | ready for new job
[2025-11-24 03:12:31] 2025-11-24 08:11:50,884 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 03:12:31] 2025-11-24 08:11:50,888 | INFO     | ***************************************
[2025-11-24 03:12:31] 2025-11-24 08:11:50,888 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 03:12:31] 2025-11-24 08:11:50,888 | INFO     | ***************************************
[2025-11-24 03:12:31] 2025-11-24 08:11:50,888 | INFO     | 
[2025-11-24 03:12:31] 2025-11-24 08:11:50,889 | INFO     | architecture information:
[2025-11-24 03:12:31] 2025-11-24 08:11:50,889 | INFO     | executing command: cat /etc/os-release
[2025-11-24 03:12:31] 2025-11-24 08:11:50,923 | INFO     | cat /etc/os-release:
[2025-11-24 03:12:31] NAME="CentOS Linux"
[2025-11-24 03:12:31] VERSION="7 (Core)"
[2025-11-24 03:12:31] ID="centos"
[2025-11-24 03:12:31] ID_LIKE="rhel fedora"
[2025-11-24 03:12:31] VERSION_ID="7"
[2025-11-24 03:12:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 03:12:31] ANSI_COLOR="0;31"
[2025-11-24 03:12:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 03:12:31] HOME_URL="https://www.centos.org/"
[2025-11-24 03:12:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 03:12:31] 
[2025-11-24 03:12:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 03:12:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 03:12:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 03:12:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 03:12:31] 
[2025-11-24 03:12:31] 2025-11-24 08:11:50,923 | INFO     | ***************************************
[2025-11-24 03:12:31] 2025-11-24 08:11:51,426 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-24 03:12:31] 2025-11-24 08:11:51,437 | INFO     | sufficient remaining disk space (24907874304 B)
[2025-11-24 03:12:31] 2025-11-24 08:11:51,437 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 03:12:31] 2025-11-24 08:11:51,437 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 03:12:31] 2025-11-24 08:11:51,438 | INFO     | update_server=False
[2025-11-24 03:12:31] 2025-11-24 08:11:51,438 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 03:12:31] 2025-11-24 08:11:51,439 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 03:12:31] 2025-11-24 08:11:51,439 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:12:31] 2025-11-24 08:11:51,630 | INFO     | all data control threads have been joined
[2025-11-24 03:12:31] 2025-11-24 08:11:51,831 | INFO     | all job control threads have been joined
[2025-11-24 03:12:31] 2025-11-24 08:11:51,917 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:12:31] 2025-11-24 08:11:51,917 | INFO     | aborting loop
[2025-11-24 03:12:31] 2025-11-24 08:11:52,151 | INFO     | all payload control threads have been joined
[2025-11-24 03:12:31] 2025-11-24 08:11:52,443 | INFO     | [job] retrieve thread has finished
[2025-11-24 03:12:31] 2025-11-24 08:11:52,444 | INFO     | [job] queue monitor thread has finished
[2025-11-24 03:12:31] 2025-11-24 08:11:52,633 | INFO     | [payload] failed_post thread has finished
[2025-11-24 03:12:31] 2025-11-24 08:11:52,635 | INFO     | [data] control thread has finished
[2025-11-24 03:12:31] 2025-11-24 08:11:52,692 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 03:12:31] 2025-11-24 08:11:52,820 | INFO     | [data] copytool_in thread has finished
[2025-11-24 03:12:31] 2025-11-24 08:11:52,829 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 03:12:31] 2025-11-24 08:11:52,836 | INFO     | [job] control thread has finished
[2025-11-24 03:12:31] 2025-11-24 08:11:52,887 | INFO     | [job] validate thread has finished
[2025-11-24 03:12:31] 2025-11-24 08:11:52,890 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 03:12:31] 2025-11-24 08:11:52,923 | INFO     | [job] job monitor thread has finished
[2025-11-24 03:12:31] 2025-11-24 08:11:53,157 | INFO     | [payload] control thread has finished
[2025-11-24 03:12:31] 2025-11-24 08:11:53,508 | INFO     | [payload] validate_post thread has finished
[2025-11-24 03:12:31] 2025-11-24 08:11:53,596 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 03:12:31] 2025-11-24 08:11:53,706 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 03:12:31] 2025-11-24 08:11:54,834 | INFO     | [data] copytool_out thread has finished
[2025-11-24 03:12:31] 2025-11-24 08:11:55,444 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 03:12:31] 2025-11-24 08:12:20,871 | INFO     | PID=30174 has CPU usage=8.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 03:12:31] 2025-11-24 08:12:20,871 | INFO     | .. there are 3 such processes running
[2025-11-24 03:12:31] 2025-11-24 08:12:20,871 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 03:12:31] 2025-11-24 08:12:20,871 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 03:12:31] 2025-11-24 08:12:20,871 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 03:12:31] 2025-11-24 08:12:24,284 | INFO     | [monitor] cgroup control has ended
[2025-11-24 03:12:31] 2025-11-24 08:12:26,043 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140197283190592)>', '<ExcThread(monitor, started 140196179863296)>']
[2025-11-24 03:12:31] 2025-11-24 08:12:26,896 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 03:12:31] 2025-11-24 08:12:26,896 | INFO     | [monitor] control thread has ended
[2025-11-24 03:12:31] 2025-11-24 08:12:31,069 | INFO     | all workflow threads have been joined
[2025-11-24 03:12:31] 2025-11-24 08:12:31,069 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 03:12:31] 2025-11-24 08:12:31,070 | INFO     | traces error code: 0
[2025-11-24 03:12:31] 2025-11-24 08:12:31,070 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 03:12:31] 2025-11-24 08:12:31,186 [wrapper] ==== pilot stdout END ====
[2025-11-24 03:12:31] 2025-11-24 08:12:31,188 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 03:12:31] 2025-11-24 08:12:31,191 [wrapper] pilotpid: 30174
[2025-11-24 03:12:31] 2025-11-24 08:12:31,193 [wrapper] Pilot exit status: 0
[2025-11-24 03:12:31] 2025-11-24 08:12:31,203 [wrapper] pandaids: 6895337348 6895337348
[2025-11-24 03:12:31] 2025-11-24 08:12:31,243 [wrapper] cleanup supervisor_pilot 30126 30175
[2025-11-24 03:12:31] 2025-11-24 08:12:31,246 [wrapper] Test setup, not cleaning
[2025-11-24 03:12:31] 2025-11-24 08:12:31,248 [wrapper] apfmon messages muted
[2025-11-24 03:12:31] 2025-11-24 08:12:31,251 [wrapper] ==== wrapper stdout END ====
[2025-11-24 03:12:31] 2025-11-24 08:12:31,253 [wrapper] ==== wrapper stderr END ====
[2025-11-24 03:12:31]  *** Error codes and diagnostics ***
[2025-11-24 03:12:31]     "exeErrorCode": 0,
[2025-11-24 03:12:31]     "exeErrorDiag": "",
[2025-11-24 03:12:31]     "pilotErrorCode": 0,
[2025-11-24 03:12:31]     "pilotErrorDiag": "",
[2025-11-24 03:12:31]  *** Listing of results directory ***
[2025-11-24 03:12:31] total 1715372
[2025-11-24 03:12:31] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-24 03:12:31] -rwx------ 1 boincer umatlas     36292 Nov 22 02:15 runpilot2-wrapper.sh
[2025-11-24 03:12:31] -rw-r--r-- 1 boincer umatlas    576529 Nov 22 02:15 pilot3.tar.gz
[2025-11-24 03:12:31] -rw-r--r-- 1 boincer umatlas      5112 Nov 22 02:15 queuedata.json
[2025-11-24 03:12:31] -rw-r--r-- 1 boincer umatlas       100 Nov 23 00:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 03:12:31] -rwxr-xr-x 1 boincer umatlas      7986 Nov 23 00:46 run_atlas
[2025-11-24 03:12:31] -rw-r--r-- 1 boincer umatlas       105 Nov 23 00:46 job.xml
[2025-11-24 03:12:31] -rw-r--r-- 3 boincer umatlas 408873487 Nov 23 00:46 EVNT.47483658._000299.pool.root.1
[2025-11-24 03:12:31] -rw-r--r-- 3 boincer umatlas 408873487 Nov 23 00:46 ATLAS.root_0
[2025-11-24 03:12:31] drwxrwx--x 2 boincer umatlas      4096 Nov 23 00:46 shared
[2025-11-24 03:12:31] -rw-r--r-- 2 boincer umatlas    590094 Nov 23 00:46 input.tar.gz
[2025-11-24 03:12:31] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 00:46 start_atlas.sh
[2025-11-24 03:12:31] -rw-r--r-- 1 boincer umatlas         0 Nov 23 00:46 boinc_lockfile
[2025-11-24 03:12:31] -rw-r--r-- 1 boincer umatlas      2785 Nov 23 08:13 pandaJob.out
[2025-11-24 03:12:31] -rw------- 1 boincer umatlas        57 Nov 23 08:13 setup.sh.local
[2025-11-24 03:12:31] -rw------- 1 boincer umatlas    989784 Nov 23 08:13 agis_schedconf.cvmfs.json
[2025-11-24 03:12:31] -rw-r--r-- 1 boincer umatlas       533 Nov 24 03:03 boinc_task_state.xml
[2025-11-24 03:12:31] -rw-r--r-- 1 boincer umatlas      5954 Nov 24 03:10 init_data.xml
[2025-11-24 03:12:31] -rw------- 1 boincer umatlas 911319315 Nov 24 03:11 HITS.47556137._002960.pool.root.1
[2025-11-24 03:12:31] -rw------- 1 boincer umatlas        96 Nov 24 03:11 pilot_heartbeat.json
[2025-11-24 03:12:31] -rw------- 1 boincer umatlas      1062 Nov 24 03:11 memory_monitor_summary.json
[2025-11-24 03:12:31] -rw------- 1 boincer umatlas   1526164 Nov 24 03:11 agis_ddmendpoints.agis.ALL.json
[2025-11-24 03:12:31] -rw------- 1 boincer umatlas   2289581 Nov 24 03:11 log.47556137._002960.job.log.tgz.1
[2025-11-24 03:12:31] -rw------- 1 boincer umatlas      8664 Nov 24 03:11 heartbeat.json
[2025-11-24 03:12:31] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 03:12 boinc_mmap_file
[2025-11-24 03:12:31] -rw-r--r-- 1 boincer umatlas        29 Nov 24 03:12 wrapper_checkpoint.txt
[2025-11-24 03:12:31] -rw------- 1 boincer umatlas      4821 Nov 24 03:12 pilotlog.txt
[2025-11-24 03:12:31] -rw------- 1 boincer umatlas   9484330 Nov 24 03:12 log.47556137._002960.job.log.1
[2025-11-24 03:12:31] -rw------- 1 boincer umatlas       353 Nov 24 03:12 output.list
[2025-11-24 03:12:31] -rw-r--r-- 1 boincer umatlas       620 Nov 24 03:12 runtime_log
[2025-11-24 03:12:31] -rw------- 1 boincer umatlas  11796480 Nov 24 03:12 result.tar.gz
[2025-11-24 03:12:31] -rw-r--r-- 1 boincer umatlas      9428 Nov 24 03:12 runtime_log.err
[2025-11-24 03:12:31] -rw------- 1 boincer umatlas       793 Nov 24 03:12 KuNNDmW1wg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmr0HKDm0Rcgum.diag
[2025-11-24 03:12:31] -rw-r--r-- 1 boincer umatlas     23451 Nov 24 03:12 stderr.txt
[2025-11-24 03:12:31] HITS file was successfully produced:
[2025-11-24 03:12:31] -rw------- 1 boincer umatlas 911319315 Nov 24 03:11 shared/HITS.pool.root.1
[2025-11-24 03:12:31]  *** Contents of shared directory: ***
[2025-11-24 03:12:31] total 1301376
[2025-11-24 03:12:31] -rw-r--r-- 3 boincer umatlas 408873487 Nov 23 00:46 ATLAS.root_0
[2025-11-24 03:12:31] -rw-r--r-- 2 boincer umatlas    590094 Nov 23 00:46 input.tar.gz
[2025-11-24 03:12:31] -rw-r--r-- 2 boincer umatlas     15847 Nov 23 00:46 start_atlas.sh
[2025-11-24 03:12:31] -rw------- 1 boincer umatlas 911319315 Nov 24 03:11 HITS.pool.root.1
[2025-11-24 03:12:31] -rw------- 1 boincer umatlas  11796480 Nov 24 03:12 result.tar.gz
03:12:32 (19048): run_atlas exited; CPU time 531770.033688
03:12:32 (19048): called boinc_finish(0)

</stderr_txt>
]]>

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