Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:12:01 (76580): wrapper (7.7.26015): starting
00:12:01 (76580): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 00:12:01] Arguments: --nthreads 8
[2025-11-23 00:12:01] Threads: 8
[2025-11-23 00:12:01] Checking for CVMFS
[2025-11-23 00:12:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:12:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:12:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:12:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:12:03] 2.13.2.0 6099 29646 295904 153197 0 254 30033517 40960001 11172 16776704 0 30720248 99.749 20785176 36193 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 00:12:03] CVMFS is ok
[2025-11-23 00:12:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:12:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 00:12:03] Further information can be found at the LHC@home message board.
[2025-11-23 00:12:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:12:03] Checking for apptainer binary...
[2025-11-23 00:12:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:12:03] Running /usr/bin/apptainer --version
[2025-11-23 00:12:04] apptainer version 1.4.4-1.el9
[2025-11-23 00:12:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:12:04] c-210-31-2.aglt2.org
[2025-11-23 00:12:04] apptainer works
[2025-11-23 00:12:04] Set ATHENA_PROC_NUMBER=8
[2025-11-23 00:12:04] Set ATHENA_CORE_NUMBER=8
[2025-11-23 00:12:04] Starting ATLAS job with PandaID=6893876652
[2025-11-23 00:12:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 12:30:14]  *** The last 200 lines of the pilot log: ***
[2025-11-24 12:30:14] 2025-11-24 17:28:50,561 | INFO     | time since job start (130547s) is within the limit (172800.0s)
[2025-11-24 12:30:14] 2025-11-24 17:28:52,613 | INFO     | time since job start (130549s) is within the limit (172800.0s)
[2025-11-24 12:30:14] 2025-11-24 17:28:52,956 | INFO     | monitor loop #8058: job 0:6893876652 is in state 'finished'
[2025-11-24 12:30:14] 2025-11-24 17:28:52,956 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 12:30:14] 2025-11-24 17:28:54,663 | INFO     | time since job start (130551s) is within the limit (172800.0s)
[2025-11-24 12:30:14] 2025-11-24 17:28:55,479 | INFO     | monitor loop #8059: job 0:6893876652 is in state 'finished'
[2025-11-24 12:30:14] 2025-11-24 17:28:55,479 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 12:30:14] 2025-11-24 17:28:56,716 | INFO     | time since job start (130553s) is within the limit (172800.0s)
[2025-11-24 12:30:14] 2025-11-24 17:28:57,983 | INFO     | monitor loop #8060: job 0:6893876652 is in state 'finished'
[2025-11-24 12:30:14] 2025-11-24 17:28:57,985 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 12:30:14] 2025-11-24 17:28:58,724 | INFO     | time since job start (130555s) is within the limit (172800.0s)
[2025-11-24 12:30:14] 2025-11-24 17:29:00,500 | INFO     | monitor loop #8061: job 0:6893876652 is in state 'finished'
[2025-11-24 12:30:14] 2025-11-24 17:29:00,500 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 12:30:14] 2025-11-24 17:29:02,387 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 12:30:14] 2025-11-24 17:29:02,456 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2690.6187500000005
[2025-11-24 12:30:14] 2025-11-24 17:29:02,588 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6893876652/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 12:30:14] 2025-11-24 17:29:02,589 | INFO     | extracted standard info from prmon json
[2025-11-24 12:30:14] 2025-11-24 17:29:02,589 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 12:30:14] 2025-11-24 17:29:02,589 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 12:30:14] 2025-11-24 17:29:02,666 | INFO     | fitting pss+swap vs Time
[2025-11-24 12:30:14] 2025-11-24 17:29:02,673 | INFO     | sum of square deviations: 3026337457987.793
[2025-11-24 12:30:14] 2025-11-24 17:29:02,936 | INFO     | sum of deviations: 4172873229879.4775
[2025-11-24 12:30:14] 2025-11-24 17:29:02,937 | INFO     | mean x: 1763940075.3158634
[2025-11-24 12:30:14] 2025-11-24 17:29:02,964 | INFO     | mean y: 2886694.0570893777
[2025-11-24 12:30:14] 2025-11-24 17:29:02,965 | INFO     | intersect: -2429326640.2388396
[2025-11-24 12:30:14] 2025-11-24 17:29:02,967 | INFO     | chi2: 45.61899806749972
[2025-11-24 12:30:14] 2025-11-24 17:29:02,970 | INFO     | sum of square deviations: 3005148747994.443
[2025-11-24 12:30:14] 2025-11-24 17:29:03,096 | INFO     | monitor loop #8062: job 0:6893876652 is in state 'finished'
[2025-11-24 12:30:14] 2025-11-24 17:29:03,097 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 12:30:14] 2025-11-24 17:29:03,366 | INFO     | sum of deviations: 5043905638099.765
[2025-11-24 12:30:14] 2025-11-24 17:29:03,366 | INFO     | mean x: 1763939922.825985
[2025-11-24 12:30:14] 2025-11-24 17:29:03,366 | INFO     | mean y: 2892962.675891182
[2025-11-24 12:30:14] 2025-11-24 17:29:03,366 | INFO     | intersect: -2957741357.9875937
[2025-11-24 12:30:14] 2025-11-24 17:29:03,373 | INFO     | chi2: 40.89507157111114
[2025-11-24 12:30:14] 2025-11-24 17:29:03,373 | INFO     | current chi2=40.89507157111114 (change=10.355173713808588 %)
[2025-11-24 12:30:14] 2025-11-24 17:29:03,373 | INFO     | right removable region: 2131
[2025-11-24 12:30:14] 2025-11-24 17:29:03,380 | INFO     | sum of square deviations: 3005143121964.4463
[2025-11-24 12:30:14] 2025-11-24 17:29:03,428 | INFO     | PID=83778 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 12:30:14] 2025-11-24 17:29:03,428 | INFO     | .. there are 11 such processes running
[2025-11-24 12:30:14] 2025-11-24 17:29:03,573 | INFO     | sum of deviations: 3280674867497.7583
[2025-11-24 12:30:14] 2025-11-24 17:29:03,574 | INFO     | mean x: 1763940227.825985
[2025-11-24 12:30:14] 2025-11-24 17:29:03,574 | INFO     | mean y: 2893113.7729831142
[2025-11-24 12:30:14] 2025-11-24 17:29:03,574 | INFO     | intersect: -1922777025.1633956
[2025-11-24 12:30:14] 2025-11-24 17:29:03,577 | INFO     | chi2: 41.20298031108852
[2025-11-24 12:30:14] 2025-11-24 17:29:03,577 | INFO     | current chi2=41.20298031108852 (change=9.680216452533836 %)
[2025-11-24 12:30:14] 2025-11-24 17:29:03,577 | INFO     | left removable region: 10
[2025-11-24 12:30:14] 2025-11-24 17:29:03,584 | INFO     | sum of square deviations: 2958870936633.2104
[2025-11-24 12:30:14] 2025-11-24 17:29:03,752 | INFO     | sum of deviations: 3496581155160.7
[2025-11-24 12:30:14] 2025-11-24 17:29:03,753 | INFO     | mean x: 1763940197.347949
[2025-11-24 12:30:14] 2025-11-24 17:29:03,753 | INFO     | mean y: 2906218.6115040076
[2025-11-24 12:30:14] 2025-11-24 17:29:03,753 | INFO     | intersect: -2081591613.4890573
[2025-11-24 12:30:14] 2025-11-24 17:29:03,755 | INFO     | chi2: 32.34795758282265
[2025-11-24 12:30:14] 2025-11-24 17:29:03,756 | INFO     | current memory leak: 1.18 B/s (using 2121 data points, chi2=32.35)
[2025-11-24 12:30:14] 2025-11-24 17:29:03,758 | INFO     | could have reported an average CPU frequency of 2761 MHz (74 samples)
[2025-11-24 12:30:14] 2025-11-24 17:29:03,758 | INFO     | ..............................
[2025-11-24 12:30:14] 2025-11-24 17:29:03,758 | INFO     | . Timing measurements:
[2025-11-24 12:30:14] 2025-11-24 17:29:03,758 | INFO     | . get job = 0 s
[2025-11-24 12:30:14] 2025-11-24 17:29:03,758 | INFO     | . initial setup = 5 s
[2025-11-24 12:30:14] 2025-11-24 17:29:03,758 | INFO     | . payload setup = 43 s
[2025-11-24 12:30:14] 2025-11-24 17:29:03,758 | INFO     | . stage-in = 0 s
[2025-11-24 12:30:14] 2025-11-24 17:29:03,758 | INFO     | . payload execution = 130385 s
[2025-11-24 12:30:14] 2025-11-24 17:29:03,758 | INFO     | . stage-out = 13 s
[2025-11-24 12:30:14] 2025-11-24 17:29:03,758 | INFO     | . log creation = 4 s
[2025-11-24 12:30:14] 2025-11-24 17:29:03,758 | INFO     | ..............................
[2025-11-24 12:30:14] 2025-11-24 17:29:03,849 | INFO     | 
[2025-11-24 12:30:14] 2025-11-24 17:29:03,850 | INFO     | job summary report
[2025-11-24 12:30:14] 2025-11-24 17:29:03,850 | INFO     | --------------------------------------------------
[2025-11-24 12:30:14] 2025-11-24 17:29:03,850 | INFO     | PanDA job id: 6893876652
[2025-11-24 12:30:14] 2025-11-24 17:29:03,850 | INFO     | task id: 47523449
[2025-11-24 12:30:14] 2025-11-24 17:29:03,850 | INFO     | errors: (none)
[2025-11-24 12:30:14] 2025-11-24 17:29:03,850 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 12:30:14] 2025-11-24 17:29:03,850 | INFO     | pilot state: finished 
[2025-11-24 12:30:14] 2025-11-24 17:29:03,850 | INFO     | transexitcode: 0
[2025-11-24 12:30:14] 2025-11-24 17:29:03,850 | INFO     | exeerrorcode: 0
[2025-11-24 12:30:14] 2025-11-24 17:29:03,850 | INFO     | exeerrordiag: 
[2025-11-24 12:30:14] 2025-11-24 17:29:03,850 | INFO     | exitcode: 0
[2025-11-24 12:30:14] 2025-11-24 17:29:03,850 | INFO     | exitmsg: OK
[2025-11-24 12:30:14] 2025-11-24 17:29:03,850 | INFO     | cpuconsumptiontime: 257864 s
[2025-11-24 12:30:14] 2025-11-24 17:29:03,851 | INFO     | nevents: 1000
[2025-11-24 12:30:14] 2025-11-24 17:29:03,851 | INFO     | neventsw: 0
[2025-11-24 12:30:14] 2025-11-24 17:29:03,851 | INFO     | pid: 102298
[2025-11-24 12:30:14] 2025-11-24 17:29:03,851 | INFO     | pgrp: 102298
[2025-11-24 12:30:14] 2025-11-24 17:29:03,851 | INFO     | corecount: 8
[2025-11-24 12:30:14] 2025-11-24 17:29:03,851 | INFO     | event service: False
[2025-11-24 12:30:14] 2025-11-24 17:29:03,851 | INFO     | sizes: {0: 2298529, 1: 2298613, 2: 2298784, 13: 2298812, 23: 2298868, 27: 2299158, 34: 2299314, 130436: 2385629, 130439: 2385628, 130452: 2395469, 130453: 2395525,
[2025-11-24 12:30:14] 2025-11-24 17:29:03,851 | INFO     | --------------------------------------------------
[2025-11-24 12:30:14] 2025-11-24 17:29:03,851 | INFO     | 
[2025-11-24 12:30:14] 2025-11-24 17:29:03,851 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-24 12:30:14] 2025-11-24 17:29:03,894 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 12:30:14] 2025-11-24 17:29:03,894 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 12:30:14] 2025-11-24 17:29:03,894 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 12:30:14] 2025-11-24 17:29:03,894 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 12:30:14] 2025-11-24 17:29:03,895 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 12:30:14] 2025-11-24 17:29:03,895 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 12:30:14] 2025-11-24 17:29:03,895 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 12:30:14] 2025-11-24 17:29:03,895 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 12:30:14] 2025-11-24 17:29:03,895 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 12:30:14] 2025-11-24 17:29:03,895 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 12:30:14] 2025-11-24 17:29:03,906 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 12:30:14] 2025-11-24 17:29:03,907 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 12:30:14] 2025-11-24 17:29:03,907 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 12:30:14] 2025-11-24 17:29:03,907 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 12:30:14] 2025-11-24 17:29:03,907 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 12:30:14] 2025-11-24 17:29:03,907 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 12:30:14] 2025-11-24 17:29:03,907 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 12:30:14] 2025-11-24 17:29:03,907 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 12:30:14] 2025-11-24 17:29:03,907 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 12:30:14] 2025-11-24 17:29:03,907 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 12:30:14] 2025-11-24 17:29:03,908 | INFO     | job 6893876652 has completed (purged errors)
[2025-11-24 12:30:14] 2025-11-24 17:29:03,908 | INFO     | overall cleanup function is called
[2025-11-24 12:30:14] 2025-11-24 17:29:05,032 | INFO     | --- collectZombieJob: --- 10, [102298]
[2025-11-24 12:30:14] 2025-11-24 17:29:05,033 | INFO     | zombie collector waiting for pid 102298
[2025-11-24 12:30:14] 2025-11-24 17:29:05,033 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 12:30:14] 2025-11-24 17:29:05,033 | INFO     | collected zombie processes
[2025-11-24 12:30:14] 2025-11-24 17:29:05,033 | INFO     | will attempt to kill all subprocesses of pid=102298
[2025-11-24 12:30:14] 2025-11-24 17:29:07,957 | INFO     | process IDs to be killed: [102298] (in reverse order)
[2025-11-24 12:30:14] 2025-11-24 17:29:08,226 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 12:30:14] 2025-11-24 17:29:08,227 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 12:30:14] 2025-11-24 17:29:08,249 | INFO     | did not find any defunct processes belonging to 102298
[2025-11-24 12:30:14] 2025-11-24 17:29:08,270 | INFO     | did not find any defunct processes belonging to 102298
[2025-11-24 12:30:14] 2025-11-24 17:29:08,272 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 12:30:14] 2025-11-24 17:29:08,272 | INFO     | ready for new job
[2025-11-24 12:30:14] 2025-11-24 17:29:08,272 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 12:30:14] 2025-11-24 17:29:08,282 | INFO     | ***************************************
[2025-11-24 12:30:14] 2025-11-24 17:29:08,282 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 12:30:14] 2025-11-24 17:29:08,282 | INFO     | ***************************************
[2025-11-24 12:30:14] 2025-11-24 17:29:08,283 | INFO     | 
[2025-11-24 12:30:14] 2025-11-24 17:29:08,286 | INFO     | architecture information:
[2025-11-24 12:30:14] 2025-11-24 17:29:08,287 | INFO     | executing command: cat /etc/os-release
[2025-11-24 12:30:14] 2025-11-24 17:29:08,306 | INFO     | cat /etc/os-release:
[2025-11-24 12:30:14] NAME="CentOS Linux"
[2025-11-24 12:30:14] VERSION="7 (Core)"
[2025-11-24 12:30:14] ID="centos"
[2025-11-24 12:30:14] ID_LIKE="rhel fedora"
[2025-11-24 12:30:14] VERSION_ID="7"
[2025-11-24 12:30:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 12:30:14] ANSI_COLOR="0;31"
[2025-11-24 12:30:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 12:30:14] HOME_URL="https://www.centos.org/"
[2025-11-24 12:30:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 12:30:14] 
[2025-11-24 12:30:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 12:30:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 12:30:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 12:30:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 12:30:14] 
[2025-11-24 12:30:14] 2025-11-24 17:29:08,307 | INFO     | ***************************************
[2025-11-24 12:30:14] 2025-11-24 17:29:08,813 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-24 12:30:14] 2025-11-24 17:29:08,979 | INFO     | sufficient remaining disk space (70535610368 B)
[2025-11-24 12:30:14] 2025-11-24 17:29:08,979 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 12:30:14] 2025-11-24 17:29:08,980 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 12:30:14] 2025-11-24 17:29:08,980 | INFO     | update_server=False
[2025-11-24 12:30:14] 2025-11-24 17:29:08,980 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 12:30:14] 2025-11-24 17:29:08,980 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 12:30:14] 2025-11-24 17:29:08,992 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 12:30:14] 2025-11-24 17:29:09,261 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 12:30:14] 2025-11-24 17:29:09,261 | INFO     | aborting loop
[2025-11-24 12:30:14] 2025-11-24 17:29:09,386 | INFO     | all payload control threads have been joined
[2025-11-24 12:30:14] 2025-11-24 17:29:09,710 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 12:30:14] 2025-11-24 17:29:09,804 | INFO     | all data control threads have been joined
[2025-11-24 12:30:14] 2025-11-24 17:29:09,804 | INFO     | all job control threads have been joined
[2025-11-24 12:30:14] 2025-11-24 17:29:09,986 | INFO     | [job] retrieve thread has finished
[2025-11-24 12:30:14] 2025-11-24 17:29:09,987 | INFO     | [job] queue monitor thread has finished
[2025-11-24 12:30:14] 2025-11-24 17:29:10,267 | INFO     | [job] job monitor thread has finished
[2025-11-24 12:30:14] 2025-11-24 17:29:10,390 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 12:30:14] 2025-11-24 17:29:10,392 | INFO     | [payload] control thread has finished
[2025-11-24 12:30:14] 2025-11-24 17:29:10,645 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 12:30:14] 2025-11-24 17:29:10,804 | INFO     | [payload] validate_post thread has finished
[2025-11-24 12:30:14] 2025-11-24 17:29:10,807 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 12:30:14] 2025-11-24 17:29:10,812 | INFO     | [data] control thread has finished
[2025-11-24 12:30:14] 2025-11-24 17:29:10,819 | INFO     | [job] control thread has finished
[2025-11-24 12:30:14] 2025-11-24 17:29:10,917 | INFO     | [job] validate thread has finished
[2025-11-24 12:30:14] 2025-11-24 17:29:10,923 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 12:30:14] 2025-11-24 17:29:11,000 | INFO     | [data] copytool_out thread has finished
[2025-11-24 12:30:14] 2025-11-24 17:29:11,046 | INFO     | [data] copytool_in thread has finished
[2025-11-24 12:30:14] 2025-11-24 17:29:11,333 | INFO     | [payload] failed_post thread has finished
[2025-11-24 12:30:14] 2025-11-24 17:29:13,721 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 12:30:14] 2025-11-24 17:29:40,893 | INFO     | PID=83778 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 12:30:14] 2025-11-24 17:29:40,893 | INFO     | .. there are 11 such processes running
[2025-11-24 12:30:14] 2025-11-24 17:29:40,939 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 12:30:14] 2025-11-24 17:29:40,939 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 12:30:14] 2025-11-24 17:29:40,939 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 12:30:14] 2025-11-24 17:30:04,856 | INFO     | [monitor] cgroup control has ended
[2025-11-24 12:30:14] 2025-11-24 17:30:06,720 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140579592812352)>', '<ExcThread(monitor, started 140578943645440)>']
[2025-11-24 12:30:14] 2025-11-24 17:30:07,161 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 12:30:14] 2025-11-24 17:30:07,161 | INFO     | [monitor] control thread has ended
[2025-11-24 12:30:14] 2025-11-24 17:30:11,747 | INFO     | all workflow threads have been joined
[2025-11-24 12:30:14] 2025-11-24 17:30:11,748 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 12:30:14] 2025-11-24 17:30:11,748 | INFO     | traces error code: 0
[2025-11-24 12:30:14] 2025-11-24 17:30:11,749 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 12:30:14] 2025-11-24 17:30:13,275 [wrapper] ==== pilot stdout END ====
[2025-11-24 12:30:14] 2025-11-24 17:30:13,299 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 12:30:14] 2025-11-24 17:30:13,314 [wrapper] pilotpid: 83778
[2025-11-24 12:30:14] 2025-11-24 17:30:13,334 [wrapper] Pilot exit status: 0
[2025-11-24 12:30:14] 2025-11-24 17:30:13,430 [wrapper] pandaids: 6893876652
[2025-11-24 12:30:14] 2025-11-24 17:30:13,646 [wrapper] cleanup supervisor_pilot 3078205 83779
[2025-11-24 12:30:14] 2025-11-24 17:30:13,689 [wrapper] Test setup, not cleaning
[2025-11-24 12:30:14] 2025-11-24 17:30:13,744 [wrapper] apfmon messages muted
[2025-11-24 12:30:14] 2025-11-24 17:30:13,795 [wrapper] ==== wrapper stdout END ====
[2025-11-24 12:30:14] 2025-11-24 17:30:13,839 [wrapper] ==== wrapper stderr END ====
[2025-11-24 12:30:14]  *** Error codes and diagnostics ***
[2025-11-24 12:30:14]     "exeErrorCode": 0,
[2025-11-24 12:30:14]     "exeErrorDiag": "",
[2025-11-24 12:30:14]     "pilotErrorCode": 0,
[2025-11-24 12:30:14]     "pilotErrorDiag": "",
[2025-11-24 12:30:14]  *** Listing of results directory ***
[2025-11-24 12:30:14] total 1355344
[2025-11-24 12:30:14] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 12:21 pilot3.tar.gz
[2025-11-24 12:30:14] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 12:33 queuedata.json
[2025-11-24 12:30:14] -rwx------. 1 boincer umatlas     36292 Nov 20 12:33 runpilot2-wrapper.sh
[2025-11-24 12:30:14] -rw-r--r--. 1 boincer umatlas       100 Nov 23 00:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 12:30:14] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 00:12 run_atlas
[2025-11-24 12:30:14] -rw-r--r--. 1 boincer umatlas       105 Nov 23 00:12 job.xml
[2025-11-24 12:30:14] -rw-r--r--. 2 boincer umatlas 410643891 Nov 23 00:12 EVNT.47493127._000766.pool.root.1
[2025-11-24 12:30:14] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:12 start_atlas.sh
[2025-11-24 12:30:14] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 00:12 shared
[2025-11-24 12:30:14] -rw-r--r--. 2 boincer umatlas    590103 Nov 23 00:12 input.tar.gz
[2025-11-24 12:30:14] -rw-r--r--. 1 boincer umatlas         0 Nov 23 00:12 boinc_lockfile
[2025-11-24 12:30:14] -rw-r--r--. 1 boincer umatlas      2785 Nov 23 00:12 pandaJob.out
[2025-11-24 12:30:14] -rw-------. 1 boincer umatlas        57 Nov 23 00:12 setup.sh.local
[2025-11-24 12:30:14] -rw-------. 1 boincer umatlas    989784 Nov 23 00:12 agis_schedconf.cvmfs.json
[2025-11-24 12:30:14] drwx------. 5 boincer umatlas      4096 Nov 23 00:13 pilot3
[2025-11-24 12:30:14] -rw-r--r--. 1 boincer umatlas       533 Nov 24 11:07 boinc_task_state.xml
[2025-11-24 12:30:14] -rw-------. 1 boincer umatlas 933870253 Nov 24 12:22 HITS.47523449._007656.pool.root.1
[2025-11-24 12:30:14] -rw-r--r--. 1 boincer umatlas      6844 Nov 24 12:27 init_data.xml
[2025-11-24 12:30:14] -rw-------. 1 boincer umatlas      1059 Nov 24 12:27 memory_monitor_summary.json
[2025-11-24 12:30:14] -rw-------. 1 boincer umatlas   1516227 Nov 24 12:28 agis_ddmendpoints.agis.ALL.json
[2025-11-24 12:30:14] -rw-------. 1 boincer umatlas   2996219 Nov 24 12:28 log.47523449._007656.job.log.tgz.1
[2025-11-24 12:30:14] -rw-------. 1 boincer umatlas      8629 Nov 24 12:29 heartbeat.json
[2025-11-24 12:30:14] -rw-------. 1 boincer umatlas        95 Nov 24 12:29 pilot_heartbeat.json
[2025-11-24 12:30:14] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 12:30 boinc_mmap_file
[2025-11-24 12:30:14] -rw-r--r--. 1 boincer umatlas        29 Nov 24 12:30 wrapper_checkpoint.txt
[2025-11-24 12:30:14] -rw-------. 1 boincer umatlas      4822 Nov 24 12:30 pilotlog.txt
[2025-11-24 12:30:14] -rw-------. 1 boincer umatlas  16726683 Nov 24 12:30 log.47523449._007656.job.log.1
[2025-11-24 12:30:14] -rw-------. 1 boincer umatlas       353 Nov 24 12:30 output.list
[2025-11-24 12:30:14] -rw-r--r--. 1 boincer umatlas       620 Nov 24 12:30 runtime_log
[2025-11-24 12:30:14] -rw-------. 1 boincer umatlas  19742720 Nov 24 12:30 result.tar.gz
[2025-11-24 12:30:14] -rw-r--r--. 1 boincer umatlas      9354 Nov 24 12:30 runtime_log.err
[2025-11-24 12:30:14] -rw-------. 1 boincer umatlas       665 Nov 24 12:30 bF2NDmoiNg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm7uGKDmkD8eXm.diag
[2025-11-24 12:30:14] -rw-r--r--. 1 boincer umatlas     21886 Nov 24 12:30 stderr.txt
[2025-11-24 12:30:14] HITS file was successfully produced:
[2025-11-24 12:30:14] -rw-------. 1 boincer umatlas 933870253 Nov 24 12:22 shared/HITS.pool.root.1
[2025-11-24 12:30:14]  *** Contents of shared directory: ***
[2025-11-24 12:30:14] total 1332884
[2025-11-24 12:30:14] -rw-r--r--. 2 boincer umatlas 410643891 Nov 23 00:12 ATLAS.root_0
[2025-11-24 12:30:14] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:12 start_atlas.sh
[2025-11-24 12:30:14] -rw-r--r--. 2 boincer umatlas    590103 Nov 23 00:12 input.tar.gz
[2025-11-24 12:30:14] -rw-------. 1 boincer umatlas 933870253 Nov 24 12:22 HITS.pool.root.1
[2025-11-24 12:30:14] -rw-------. 1 boincer umatlas  19742720 Nov 24 12:30 result.tar.gz
12:30:16 (76580): run_atlas exited; CPU time 259654.211436
12:30:16 (76580): called boinc_finish(0)

</stderr_txt>
]]>

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