Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:10:26 (3010899): wrapper (7.7.26015): starting
00:10:26 (3010899): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 00:10:26] Arguments: --nthreads 8
[2025-11-23 00:10:26] Threads: 8
[2025-11-23 00:10:26] Checking for CVMFS
[2025-11-23 00:10:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:10:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:10:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:10:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:10:28] 2.13.3.0 10223 25270 223620 153197 3 659 33105011 40960000 50648 16776704 0 334493774 99.784 183080881 50319 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 00:10:28] CVMFS is ok
[2025-11-23 00:10:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:10:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 00:10:28] Further information can be found at the LHC@home message board.
[2025-11-23 00:10:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:10:28] Checking for apptainer binary...
[2025-11-23 00:10:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:10:28] Running /usr/bin/apptainer --version
[2025-11-23 00:10:28] apptainer version 1.4.4-1.el9
[2025-11-23 00:10:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:10:29] c8-7-6.aglt2.org
[2025-11-23 00:10:29] apptainer works
[2025-11-23 00:10:29] Set ATHENA_PROC_NUMBER=8
[2025-11-23 00:10:29] Set ATHENA_CORE_NUMBER=8
[2025-11-23 00:10:30] Starting ATLAS job with PandaID=6894289662
[2025-11-23 00:10:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 11:05:36]  *** The last 200 lines of the pilot log: ***
[2025-11-23 11:05:36] 2025-11-23 16:04:21,175 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 11:05:36] 2025-11-23 16:04:22,913 | INFO     | PID=3035913 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 11:05:36] 2025-11-23 16:04:22,913 | INFO     | .. there are 57 such processes running
[2025-11-23 11:05:36] 2025-11-23 16:04:23,681 | INFO     | monitor loop #2279: job 0:6894289662 is in state 'finished'
[2025-11-23 11:05:36] 2025-11-23 16:04:23,681 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 11:05:36] 2025-11-23 16:04:23,915 | INFO     | time since job start (39142s) is within the limit (172800.0s)
[2025-11-23 11:05:36] 2025-11-23 16:04:25,923 | INFO     | time since job start (39144s) is within the limit (172800.0s)
[2025-11-23 11:05:36] 2025-11-23 16:04:26,191 | INFO     | monitor loop #2280: job 0:6894289662 is in state 'finished'
[2025-11-23 11:05:36] 2025-11-23 16:04:26,191 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 11:05:36] 2025-11-23 16:04:27,636 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-23 11:05:36] 2025-11-23 16:04:27,658 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3781.842078124997
[2025-11-23 11:05:36] 2025-11-23 16:04:27,734 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6894289662/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 11:05:36] 2025-11-23 16:04:27,734 | INFO     | extracted standard info from prmon json
[2025-11-23 11:05:36] 2025-11-23 16:04:27,735 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 11:05:36] 2025-11-23 16:04:27,735 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 11:05:36] 2025-11-23 16:04:27,771 | INFO     | fitting pss+swap vs Time
[2025-11-23 11:05:36] 2025-11-23 16:04:27,772 | INFO     | sum of square deviations: 80512448529.27896
[2025-11-23 11:05:36] 2025-11-23 16:04:27,790 | INFO     | sum of deviations: 1339855393411.3918
[2025-11-23 11:05:36] 2025-11-23 16:04:27,790 | INFO     | mean x: 1763894389.7805643
[2025-11-23 11:05:36] 2025-11-23 16:04:27,791 | INFO     | mean y: 2890991.0313479626
[2025-11-23 11:05:36] 2025-11-23 16:04:27,791 | INFO     | intersect: -29351121397.452026
[2025-11-23 11:05:36] 2025-11-23 16:04:27,791 | INFO     | chi2: 15.272870402195139
[2025-11-23 11:05:36] 2025-11-23 16:04:27,791 | INFO     | sum of square deviations: 78634818264.4392
[2025-11-23 11:05:36] 2025-11-23 16:04:27,811 | INFO     | sum of deviations: 1559068437056.8784
[2025-11-23 11:05:36] 2025-11-23 16:04:27,811 | INFO     | mean x: 1763894237.3143759
[2025-11-23 11:05:36] 2025-11-23 16:04:27,811 | INFO     | mean y: 2908787.101105845
[2025-11-23 11:05:36] 2025-11-23 16:04:27,811 | INFO     | intersect: -34969281553.00168
[2025-11-23 11:05:36] 2025-11-23 16:04:27,828 | INFO     | chi2: 11.767948374214285
[2025-11-23 11:05:36] 2025-11-23 16:04:27,828 | INFO     | current chi2=11.767948374214285 (change=22.948679165621012 %)
[2025-11-23 11:05:36] 2025-11-23 16:04:27,828 | INFO     | right removable region: 632
[2025-11-23 11:05:36] 2025-11-23 16:04:27,828 | INFO     | sum of square deviations: 78633152354.4392
[2025-11-23 11:05:36] 2025-11-23 16:04:27,865 | INFO     | sum of deviations: 1082597216136.2667
[2025-11-23 11:05:36] 2025-11-23 16:04:27,865 | INFO     | mean x: 1763894542.3143759
[2025-11-23 11:05:36] 2025-11-23 16:04:27,865 | INFO     | mean y: 2911867.827804107
[2025-11-23 11:05:36] 2025-11-23 16:04:27,865 | INFO     | intersect: -24281849252.520348
[2025-11-23 11:05:36] 2025-11-23 16:04:27,866 | INFO     | chi2: 11.194289142926271
[2025-11-23 11:05:36] 2025-11-23 16:04:27,866 | INFO     | current chi2=11.194289142926271 (change=26.704746074992304 %)
[2025-11-23 11:05:36] 2025-11-23 16:04:27,866 | INFO     | sum of square deviations: 76783375342.0177
[2025-11-23 11:05:36] 2025-11-23 16:04:27,920 | INFO     | sum of deviations: 911171630040.3531
[2025-11-23 11:05:36] 2025-11-23 16:04:27,920 | INFO     | mean x: 1763894694.8455415
[2025-11-23 11:05:36] 2025-11-23 16:04:27,920 | INFO     | mean y: 2925981.51910828
[2025-11-23 11:05:36] 2025-11-23 16:04:27,920 | INFO     | intersect: -20928829065.23304
[2025-11-23 11:05:36] 2025-11-23 16:04:27,923 | INFO     | chi2: 9.376140739859071
[2025-11-23 11:05:36] 2025-11-23 16:04:27,923 | INFO     | current chi2=9.376140739859071 (change=16.24174951936182 %)
[2025-11-23 11:05:36] 2025-11-23 16:04:27,923 | INFO     | left removable region: 20
[2025-11-23 11:05:36] 2025-11-23 16:04:27,923 | INFO     | sum of square deviations: 71061519740.51514
[2025-11-23 11:05:36] 2025-11-23 16:04:27,935 | INFO     | sum of deviations: 1086599916726.1427
[2025-11-23 11:05:36] 2025-11-23 16:04:27,935 | INFO     | mean x: 1763894816.9362745
[2025-11-23 11:05:36] 2025-11-23 16:04:27,935 | INFO     | mean y: 2957167.1062091505
[2025-11-23 11:05:36] 2025-11-23 16:04:27,935 | INFO     | intersect: -26968714254.999187
[2025-11-23 11:05:36] 2025-11-23 16:04:27,935 | INFO     | chi2: 4.727161525459246
[2025-11-23 11:05:36] 2025-11-23 16:04:27,935 | INFO     | current memory leak: 15.29 B/s (using 612 data points, chi2=4.73)
[2025-11-23 11:05:36] 2025-11-23 16:04:27,936 | INFO     | could have reported an average CPU frequency of 3797 MHz (25 samples)
[2025-11-23 11:05:36] 2025-11-23 16:04:27,936 | INFO     | ..............................
[2025-11-23 11:05:36] 2025-11-23 16:04:27,936 | INFO     | . Timing measurements:
[2025-11-23 11:05:36] 2025-11-23 16:04:27,936 | INFO     | . get job = 0 s
[2025-11-23 11:05:36] 2025-11-23 16:04:27,936 | INFO     | . initial setup = 4 s
[2025-11-23 11:05:36] 2025-11-23 16:04:27,936 | INFO     | . payload setup = 93 s
[2025-11-23 11:05:36] 2025-11-23 16:04:27,936 | INFO     | . stage-in = 0 s
[2025-11-23 11:05:36] 2025-11-23 16:04:27,936 | INFO     | . payload execution = 38918 s
[2025-11-23 11:05:36] 2025-11-23 16:04:27,936 | INFO     | . stage-out = 8 s
[2025-11-23 11:05:36] 2025-11-23 16:04:27,937 | INFO     | . log creation = 2 s
[2025-11-23 11:05:36] 2025-11-23 16:04:27,937 | INFO     | ..............................
[2025-11-23 11:05:36] 2025-11-23 16:04:27,941 | INFO     | time since job start (39146s) is within the limit (172800.0s)
[2025-11-23 11:05:36] 2025-11-23 16:04:28,286 | INFO     | 
[2025-11-23 11:05:36] 2025-11-23 16:04:28,286 | INFO     | job summary report
[2025-11-23 11:05:36] 2025-11-23 16:04:28,286 | INFO     | --------------------------------------------------
[2025-11-23 11:05:36] 2025-11-23 16:04:28,286 | INFO     | PanDA job id: 6894289662
[2025-11-23 11:05:36] 2025-11-23 16:04:28,286 | INFO     | task id: 47533967
[2025-11-23 11:05:36] 2025-11-23 16:04:28,286 | INFO     | errors: (none)
[2025-11-23 11:05:36] 2025-11-23 16:04:28,286 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 11:05:36] 2025-11-23 16:04:28,286 | INFO     | pilot state: finished 
[2025-11-23 11:05:36] 2025-11-23 16:04:28,286 | INFO     | transexitcode: 0
[2025-11-23 11:05:36] 2025-11-23 16:04:28,286 | INFO     | exeerrorcode: 0
[2025-11-23 11:05:36] 2025-11-23 16:04:28,286 | INFO     | exeerrordiag: 
[2025-11-23 11:05:36] 2025-11-23 16:04:28,286 | INFO     | exitcode: 0
[2025-11-23 11:05:36] 2025-11-23 16:04:28,286 | INFO     | exitmsg: OK
[2025-11-23 11:05:36] 2025-11-23 16:04:28,286 | INFO     | cpuconsumptiontime: 136046 s
[2025-11-23 11:05:36] 2025-11-23 16:04:28,286 | INFO     | nevents: 1000
[2025-11-23 11:05:36] 2025-11-23 16:04:28,286 | INFO     | neventsw: 0
[2025-11-23 11:05:36] 2025-11-23 16:04:28,286 | INFO     | pid: 3103518
[2025-11-23 11:05:36] 2025-11-23 16:04:28,287 | INFO     | pgrp: 3103518
[2025-11-23 11:05:36] 2025-11-23 16:04:28,287 | INFO     | corecount: 8
[2025-11-23 11:05:36] 2025-11-23 16:04:28,287 | INFO     | event service: False
[2025-11-23 11:05:36] 2025-11-23 16:04:28,287 | INFO     | sizes: {0: 2298756, 1: 2298756, 12: 2298784, 23: 2298812, 33: 2298840, 43: 2299158, 44: 2299314, 39016: 2342095, 39024: 2351089, 39025: 2351145, 39057: 2351455}
[2025-11-23 11:05:36] 2025-11-23 16:04:28,287 | INFO     | --------------------------------------------------
[2025-11-23 11:05:36] 2025-11-23 16:04:28,287 | INFO     | 
[2025-11-23 11:05:36] 2025-11-23 16:04:28,287 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-23 11:05:36] 2025-11-23 16:04:28,428 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 11:05:36] 2025-11-23 16:04:28,428 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 11:05:36] 2025-11-23 16:04:28,428 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 11:05:36] 2025-11-23 16:04:28,428 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 11:05:36] 2025-11-23 16:04:28,428 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 11:05:36] 2025-11-23 16:04:28,428 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 11:05:36] 2025-11-23 16:04:28,428 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 11:05:36] 2025-11-23 16:04:28,429 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 11:05:36] 2025-11-23 16:04:28,429 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 11:05:36] 2025-11-23 16:04:28,429 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 11:05:36] 2025-11-23 16:04:28,429 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 11:05:36] 2025-11-23 16:04:28,429 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 11:05:36] 2025-11-23 16:04:28,429 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 11:05:36] 2025-11-23 16:04:28,429 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 11:05:36] 2025-11-23 16:04:28,429 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 11:05:36] 2025-11-23 16:04:28,429 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 11:05:36] 2025-11-23 16:04:28,429 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 11:05:36] 2025-11-23 16:04:28,429 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 11:05:36] 2025-11-23 16:04:28,429 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 11:05:36] 2025-11-23 16:04:28,429 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 11:05:36] 2025-11-23 16:04:28,429 | INFO     | job 6894289662 has completed (purged errors)
[2025-11-23 11:05:36] 2025-11-23 16:04:28,429 | INFO     | overall cleanup function is called
[2025-11-23 11:05:36] 2025-11-23 16:04:29,458 | INFO     | --- collectZombieJob: --- 10, [3103518]
[2025-11-23 11:05:36] 2025-11-23 16:04:29,460 | INFO     | zombie collector waiting for pid 3103518
[2025-11-23 11:05:36] 2025-11-23 16:04:29,460 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 11:05:36] 2025-11-23 16:04:29,460 | INFO     | collected zombie processes
[2025-11-23 11:05:36] 2025-11-23 16:04:29,460 | INFO     | will attempt to kill all subprocesses of pid=3103518
[2025-11-23 11:05:36] 2025-11-23 16:04:31,295 | INFO     | process IDs to be killed: [3103518] (in reverse order)
[2025-11-23 11:05:36] 2025-11-23 16:04:31,838 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 11:05:36] 2025-11-23 16:04:31,838 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 11:05:36] 2025-11-23 16:04:31,933 | INFO     | did not find any defunct processes belonging to 3103518
[2025-11-23 11:05:36] 2025-11-23 16:04:31,968 | INFO     | did not find any defunct processes belonging to 3103518
[2025-11-23 11:05:36] 2025-11-23 16:04:31,984 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 11:05:36] 2025-11-23 16:04:31,984 | INFO     | ready for new job
[2025-11-23 11:05:36] 2025-11-23 16:04:31,984 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 11:05:36] 2025-11-23 16:04:31,986 | INFO     | ***************************************
[2025-11-23 11:05:36] 2025-11-23 16:04:31,986 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 11:05:36] 2025-11-23 16:04:31,986 | INFO     | ***************************************
[2025-11-23 11:05:36] 2025-11-23 16:04:31,986 | INFO     | 
[2025-11-23 11:05:36] 2025-11-23 16:04:31,994 | INFO     | architecture information:
[2025-11-23 11:05:36] 2025-11-23 16:04:32,005 | INFO     | executing command: cat /etc/os-release
[2025-11-23 11:05:36] 2025-11-23 16:04:32,059 | INFO     | cat /etc/os-release:
[2025-11-23 11:05:36] NAME="CentOS Linux"
[2025-11-23 11:05:36] VERSION="7 (Core)"
[2025-11-23 11:05:36] ID="centos"
[2025-11-23 11:05:36] ID_LIKE="rhel fedora"
[2025-11-23 11:05:36] VERSION_ID="7"
[2025-11-23 11:05:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 11:05:36] ANSI_COLOR="0;31"
[2025-11-23 11:05:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 11:05:36] HOME_URL="https://www.centos.org/"
[2025-11-23 11:05:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 11:05:36] 
[2025-11-23 11:05:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 11:05:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 11:05:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 11:05:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 11:05:36] 
[2025-11-23 11:05:36] 2025-11-23 16:04:32,060 | INFO     | ***************************************
[2025-11-23 11:05:36] 2025-11-23 16:04:32,570 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-23 11:05:36] 2025-11-23 16:04:32,648 | INFO     | sufficient remaining disk space (160285327360 B)
[2025-11-23 11:05:36] 2025-11-23 16:04:32,649 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 11:05:36] 2025-11-23 16:04:32,649 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 11:05:36] 2025-11-23 16:04:32,649 | INFO     | update_server=False
[2025-11-23 11:05:36] 2025-11-23 16:04:32,649 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 11:05:36] 2025-11-23 16:04:32,650 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 11:05:36] 2025-11-23 16:04:32,650 | INFO     | aborting loop
[2025-11-23 11:05:36] 2025-11-23 16:04:32,862 | INFO     | all data control threads have been joined
[2025-11-23 11:05:36] 2025-11-23 16:04:33,030 | INFO     | all payload control threads have been joined
[2025-11-23 11:05:36] 2025-11-23 16:04:33,279 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 11:05:36] 2025-11-23 16:04:33,489 | INFO     | all job control threads have been joined
[2025-11-23 11:05:36] 2025-11-23 16:04:33,568 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 11:05:36] 2025-11-23 16:04:33,605 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 11:05:36] 2025-11-23 16:04:33,656 | INFO     | [job] job monitor thread has finished
[2025-11-23 11:05:36] 2025-11-23 16:04:33,665 | INFO     | [job] retrieve thread has finished
[2025-11-23 11:05:36] 2025-11-23 16:04:33,868 | INFO     | [data] control thread has finished
[2025-11-23 11:05:36] 2025-11-23 16:04:33,897 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 11:05:36] 2025-11-23 16:04:33,964 | INFO     | [payload] failed_post thread has finished
[2025-11-23 11:05:36] 2025-11-23 16:04:34,036 | INFO     | [payload] control thread has finished
[2025-11-23 11:05:36] 2025-11-23 16:04:34,251 | INFO     | [data] copytool_in thread has finished
[2025-11-23 11:05:36] 2025-11-23 16:04:34,293 | INFO     | [job] queue monitor thread has finished
[2025-11-23 11:05:36] 2025-11-23 16:04:34,389 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 11:05:36] 2025-11-23 16:04:34,457 | INFO     | [payload] validate_post thread has finished
[2025-11-23 11:05:36] 2025-11-23 16:04:34,462 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 11:05:36] 2025-11-23 16:04:34,495 | INFO     | [job] control thread has finished
[2025-11-23 11:05:36] 2025-11-23 16:04:34,787 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 11:05:36] 2025-11-23 16:04:35,115 | INFO     | [job] validate thread has finished
[2025-11-23 11:05:36] 2025-11-23 16:04:35,591 | INFO     | [data] copytool_out thread has finished
[2025-11-23 11:05:36] 2025-11-23 16:04:37,614 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 11:05:36] 2025-11-23 16:05:02,813 | INFO     | PID=3035913 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 11:05:36] 2025-11-23 16:05:02,813 | INFO     | .. there are 57 such processes running
[2025-11-23 11:05:36] 2025-11-23 16:05:02,814 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 11:05:36] 2025-11-23 16:05:02,814 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 11:05:36] 2025-11-23 16:05:02,814 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 11:05:36] 2025-11-23 16:05:08,891 | INFO     | [monitor] cgroup control has ended
[2025-11-23 11:05:36] 2025-11-23 16:05:09,832 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139840306640704)>', '<ExcThread(monitor, started 139839949227776)>']
[2025-11-23 11:05:36] 2025-11-23 16:05:09,856 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 11:05:36] 2025-11-23 16:05:09,856 | INFO     | [monitor] control thread has ended
[2025-11-23 11:05:36] 2025-11-23 16:05:14,857 | INFO     | all workflow threads have been joined
[2025-11-23 11:05:36] 2025-11-23 16:05:14,857 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 11:05:36] 2025-11-23 16:05:14,857 | INFO     | traces error code: 0
[2025-11-23 11:05:36] 2025-11-23 16:05:14,857 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 11:05:36] 2025-11-23 16:05:15,234 [wrapper] ==== pilot stdout END ====
[2025-11-23 11:05:36] 2025-11-23 16:05:15,272 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 11:05:36] 2025-11-23 16:05:15,315 [wrapper] pilotpid: 3035913
[2025-11-23 11:05:36] 2025-11-23 16:05:15,323 [wrapper] Pilot exit status: 0
[2025-11-23 11:05:36] 2025-11-23 16:05:15,511 [wrapper] pandaids: 6894289662
[2025-11-23 11:05:36] 2025-11-23 16:05:16,054 [wrapper] cleanup supervisor_pilot 3983895 3035914
[2025-11-23 11:05:36] 2025-11-23 16:05:16,062 [wrapper] Test setup, not cleaning
[2025-11-23 11:05:36] 2025-11-23 16:05:16,084 [wrapper] apfmon messages muted
[2025-11-23 11:05:36] 2025-11-23 16:05:16,104 [wrapper] ==== wrapper stdout END ====
[2025-11-23 11:05:36] 2025-11-23 16:05:16,134 [wrapper] ==== wrapper stderr END ====
[2025-11-23 11:05:36]  *** Error codes and diagnostics ***
[2025-11-23 11:05:36]     "exeErrorCode": 0,
[2025-11-23 11:05:36]     "exeErrorDiag": "",
[2025-11-23 11:05:36]     "pilotErrorCode": 0,
[2025-11-23 11:05:36]     "pilotErrorDiag": "",
[2025-11-23 11:05:36]  *** Listing of results directory ***
[2025-11-23 11:05:36] total 1311908
[2025-11-23 11:05:36] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 06:23 pilot3.tar.gz
[2025-11-23 11:05:36] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 06:26 queuedata.json
[2025-11-23 11:05:36] -rwx------. 1 boincer umatlas     36292 Nov 21 06:26 runpilot2-wrapper.sh
[2025-11-23 11:05:36] -rw-r--r--. 1 boincer umatlas       100 Nov 23 00:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 11:05:36] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 00:10 run_atlas
[2025-11-23 11:05:36] -rw-r--r--. 1 boincer umatlas       105 Nov 23 00:10 job.xml
[2025-11-23 11:05:36] -rw-r--r--. 2 boincer umatlas 409453959 Nov 23 00:10 EVNT.47493127._002408.pool.root.1
[2025-11-23 11:05:36] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:10 start_atlas.sh
[2025-11-23 11:05:36] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 00:10 shared
[2025-11-23 11:05:36] -rw-r--r--. 2 boincer umatlas    590105 Nov 23 00:10 input.tar.gz
[2025-11-23 11:05:36] -rw-r--r--. 1 boincer umatlas         0 Nov 23 00:10 boinc_lockfile
[2025-11-23 11:05:36] -rw-r--r--. 1 boincer umatlas      2785 Nov 23 00:10 pandaJob.out
[2025-11-23 11:05:36] -rw-------. 1 boincer umatlas        57 Nov 23 00:10 setup.sh.local
[2025-11-23 11:05:36] -rw-------. 1 boincer umatlas    989784 Nov 23 00:11 agis_schedconf.cvmfs.json
[2025-11-23 11:05:36] drwx------. 5 boincer umatlas      4096 Nov 23 00:12 pilot3
[2025-11-23 11:05:36] -rw-r--r--. 1 boincer umatlas       533 Nov 23 10:48 boinc_task_state.xml
[2025-11-23 11:05:36] -rw-r--r--. 1 boincer umatlas      7173 Nov 23 11:00 init_data.xml
[2025-11-23 11:05:36] -rw-------. 1 boincer umatlas 916621311 Nov 23 11:03 HITS.47533967._003799.pool.root.1
[2025-11-23 11:05:36] -rw-------. 1 boincer umatlas      1076 Nov 23 11:03 memory_monitor_summary.json
[2025-11-23 11:05:36] -rw-------. 1 boincer umatlas   1526164 Nov 23 11:03 agis_ddmendpoints.agis.ALL.json
[2025-11-23 11:05:36] -rw-------. 1 boincer umatlas   1857903 Nov 23 11:03 log.47533967._003799.job.log.tgz.1
[2025-11-23 11:05:36] -rw-------. 1 boincer umatlas      8640 Nov 23 11:04 heartbeat.json
[2025-11-23 11:05:36] -rw-------. 1 boincer umatlas        95 Nov 23 11:05 pilot_heartbeat.json
[2025-11-23 11:05:36] -rw-------. 1 boincer umatlas      4825 Nov 23 11:05 pilotlog.txt
[2025-11-23 11:05:36] -rw-------. 1 boincer umatlas   4836930 Nov 23 11:05 log.47533967._003799.job.log.1
[2025-11-23 11:05:36] -rw-------. 1 boincer umatlas       353 Nov 23 11:05 output.list
[2025-11-23 11:05:36] -rw-r--r--. 1 boincer umatlas       620 Nov 23 11:05 runtime_log
[2025-11-23 11:05:36] -rw-------. 1 boincer umatlas   6717440 Nov 23 11:05 result.tar.gz
[2025-11-23 11:05:36] -rw-r--r--. 1 boincer umatlas      9333 Nov 23 11:05 runtime_log.err
[2025-11-23 11:05:36] -rw-------. 1 boincer umatlas       663 Nov 23 11:05 31xNDmqSeg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmeLJKDmYv1cFm.diag
[2025-11-23 11:05:36] -rw-r--r--. 1 boincer umatlas      8192 Nov 23 11:05 boinc_mmap_file
[2025-11-23 11:05:36] -rw-r--r--. 1 boincer umatlas        29 Nov 23 11:05 wrapper_checkpoint.txt
[2025-11-23 11:05:36] -rw-r--r--. 1 boincer umatlas     21432 Nov 23 11:05 stderr.txt
[2025-11-23 11:05:36] HITS file was successfully produced:
[2025-11-23 11:05:36] -rw-------. 1 boincer umatlas 916621311 Nov 23 11:03 shared/HITS.pool.root.1
[2025-11-23 11:05:36]  *** Contents of shared directory: ***
[2025-11-23 11:05:36] total 1302164
[2025-11-23 11:05:36] -rw-r--r--. 2 boincer umatlas 409453959 Nov 23 00:10 ATLAS.root_0
[2025-11-23 11:05:36] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:10 start_atlas.sh
[2025-11-23 11:05:36] -rw-r--r--. 2 boincer umatlas    590105 Nov 23 00:10 input.tar.gz
[2025-11-23 11:05:36] -rw-------. 1 boincer umatlas 916621311 Nov 23 11:03 HITS.pool.root.1
[2025-11-23 11:05:36] -rw-------. 1 boincer umatlas   6717440 Nov 23 11:05 result.tar.gz
11:05:39 (3010899): run_atlas exited; CPU time 136804.365112
11:05:39 (3010899): called boinc_finish(0)

</stderr_txt>
]]>

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