Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:04 (4150595): wrapper (7.7.26015): starting
00:03:04 (4150595): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 00:03:04] Arguments: --nthreads 12
[2025-11-24 00:03:04] Threads: 12
[2025-11-24 00:03:04] Checking for CVMFS
[2025-11-24 00:03:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:03:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:03:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:03:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:03:07] 2.13.2.0 5631 30517 190244 153233 1 64 32162180 39288832 9473 16776704 0 18244011 99.582 18365941 37119 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 00:03:07] CVMFS is ok
[2025-11-24 00:03:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:03:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:03:08] Further information can be found at the LHC@home message board.
[2025-11-24 00:03:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:03:08] Checking for apptainer binary...
[2025-11-24 00:03:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:03:08] Running /usr/bin/apptainer --version
[2025-11-24 00:03:08] apptainer version 1.4.4-1.el9
[2025-11-24 00:03:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:03:09] c-210-15.aglt2.org
[2025-11-24 00:03:09] apptainer works
[2025-11-24 00:03:09] Set ATHENA_PROC_NUMBER=12
[2025-11-24 00:03:09] Set ATHENA_CORE_NUMBER=12
[2025-11-24 00:03:09] Starting ATLAS job with PandaID=6895330219
[2025-11-24 00:03:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 15:59:51]  *** The last 200 lines of the pilot log: ***
[2025-11-25 15:59:51] 2025-11-25 20:58:53,592 | INFO     | .. there are 8 such processes running
[2025-11-25 15:59:51] 2025-11-25 20:58:53,877 | INFO     | monitor loop #7690: job 0:6895330219 is in state 'finished'
[2025-11-25 15:59:51] 2025-11-25 20:58:53,877 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 15:59:51] 2025-11-25 20:58:54,603 | INFO     | time since job start (143662s) is within the limit (172800.0s)
[2025-11-25 15:59:51] 2025-11-25 20:58:56,382 | INFO     | monitor loop #7691: job 0:6895330219 is in state 'finished'
[2025-11-25 15:59:51] 2025-11-25 20:58:56,382 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 15:59:51] 2025-11-25 20:58:56,617 | INFO     | time since job start (143664s) is within the limit (172800.0s)
[2025-11-25 15:59:51] 2025-11-25 20:58:58,624 | INFO     | time since job start (143666s) is within the limit (172800.0s)
[2025-11-25 15:59:51] 2025-11-25 20:58:58,917 | INFO     | monitor loop #7692: job 0:6895330219 is in state 'finished'
[2025-11-25 15:59:51] 2025-11-25 20:58:58,917 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 15:59:51] 2025-11-25 20:59:00,170 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 15:59:51] 2025-11-25 20:59:00,206 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1547249999994
[2025-11-25 15:59:51] 2025-11-25 20:59:00,233 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895330219/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 15:59:51] 2025-11-25 20:59:00,234 | INFO     | extracted standard info from prmon json
[2025-11-25 15:59:51] 2025-11-25 20:59:00,234 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 15:59:51] 2025-11-25 20:59:00,235 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 15:59:51] 2025-11-25 20:59:00,637 | INFO     | time since job start (143668s) is within the limit (172800.0s)
[2025-11-25 15:59:51] 2025-11-25 20:59:00,735 | INFO     | fitting pss+swap vs Time
[2025-11-25 15:59:51] 2025-11-25 20:59:00,789 | INFO     | sum of square deviations: 4025562772026.3174
[2025-11-25 15:59:51] 2025-11-25 20:59:01,506 | INFO     | monitor loop #7693: job 0:6895330219 is in state 'finished'
[2025-11-25 15:59:51] 2025-11-25 20:59:01,506 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 15:59:51] 2025-11-25 20:59:02,819 | INFO     | sum of deviations: 11587570111664.07
[2025-11-25 15:59:51] 2025-11-25 20:59:02,819 | INFO     | mean x: 1764032533.6179729
[2025-11-25 15:59:51] 2025-11-25 20:59:02,820 | INFO     | mean y: 3388473.788330494
[2025-11-25 15:59:51] 2025-11-25 20:59:02,820 | INFO     | intersect: -5074373772.17598
[2025-11-25 15:59:51] 2025-11-25 20:59:02,882 | INFO     | time since job start (143670s) is within the limit (172800.0s)
[2025-11-25 15:59:51] 2025-11-25 20:59:02,926 | INFO     | chi2: 54.724819540513714
[2025-11-25 15:59:51] 2025-11-25 20:59:03,067 | INFO     | sum of square deviations: 3999939497163.557
[2025-11-25 15:59:51] 2025-11-25 20:59:03,743 | INFO     | sum of deviations: 12693154744051.355
[2025-11-25 15:59:51] 2025-11-25 20:59:03,744 | INFO     | mean x: 1764032381.0136578
[2025-11-25 15:59:51] 2025-11-25 20:59:03,744 | INFO     | mean y: 3395057.9884763123
[2025-11-25 15:59:51] 2025-11-25 20:59:03,744 | INFO     | intersect: -5594473610.175568
[2025-11-25 15:59:51] 2025-11-25 20:59:03,760 | INFO     | chi2: 49.93209531601315
[2025-11-25 15:59:51] 2025-11-25 20:59:03,760 | INFO     | current chi2=49.93209531601315 (change=8.75786209025766 %)
[2025-11-25 15:59:51] 2025-11-25 20:59:03,760 | INFO     | right removable region: 2342
[2025-11-25 15:59:51] 2025-11-25 20:59:03,772 | INFO     | sum of square deviations: 3999905635294.4243
[2025-11-25 15:59:51] 2025-11-25 20:59:04,511 | INFO     | monitor loop #7694: job 0:6895330219 is in state 'finished'
[2025-11-25 15:59:51] 2025-11-25 20:59:04,511 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 15:59:51] 2025-11-25 20:59:04,772 | INFO     | sum of deviations: 10572425242973.195
[2025-11-25 15:59:51] 2025-11-25 20:59:04,772 | INFO     | mean x: 1764032686.32309
[2025-11-25 15:59:51] 2025-11-25 20:59:04,772 | INFO     | mean y: 3394514.8015364916
[2025-11-25 15:59:51] 2025-11-25 20:59:04,773 | INFO     | intersect: -4659241407.842989
[2025-11-25 15:59:51] 2025-11-25 20:59:04,781 | INFO     | chi2: 51.41038993503799
[2025-11-25 15:59:51] 2025-11-25 20:59:04,781 | INFO     | current chi2=51.41038993503799 (change=6.0565382093621976 %)
[2025-11-25 15:59:51] 2025-11-25 20:59:04,782 | INFO     | left removable region: 10
[2025-11-25 15:59:51] 2025-11-25 20:59:04,789 | INFO     | sum of square deviations: 3943884234936.487
[2025-11-25 15:59:51] 2025-11-25 20:59:04,901 | INFO     | time since job start (143672s) is within the limit (172800.0s)
[2025-11-25 15:59:51] 2025-11-25 20:59:05,068 | INFO     | sum of deviations: 11097263919944.402
[2025-11-25 15:59:51] 2025-11-25 20:59:05,069 | INFO     | mean x: 1764032655.9039452
[2025-11-25 15:59:51] 2025-11-25 20:59:05,069 | INFO     | mean y: 3406898.7114065182
[2025-11-25 15:59:51] 2025-11-25 20:59:05,069 | INFO     | intersect: -4960211397.321515
[2025-11-25 15:59:51] 2025-11-25 20:59:05,076 | INFO     | chi2: 44.116097779477286
[2025-11-25 15:59:51] 2025-11-25 20:59:05,077 | INFO     | current memory leak: 2.81 B/s (using 2332 data points, chi2=44.12)
[2025-11-25 15:59:51] 2025-11-25 20:59:05,084 | INFO     | could have reported an average CPU frequency of 2595 MHz (81 samples)
[2025-11-25 15:59:51] 2025-11-25 20:59:05,084 | INFO     | ..............................
[2025-11-25 15:59:51] 2025-11-25 20:59:05,084 | INFO     | . Timing measurements:
[2025-11-25 15:59:51] 2025-11-25 20:59:05,084 | INFO     | . get job = 0 s
[2025-11-25 15:59:51] 2025-11-25 20:59:05,084 | INFO     | . initial setup = 7 s
[2025-11-25 15:59:51] 2025-11-25 20:59:05,085 | INFO     | . payload setup = 48 s
[2025-11-25 15:59:51] 2025-11-25 20:59:05,085 | INFO     | . stage-in = 0 s
[2025-11-25 15:59:51] 2025-11-25 20:59:05,085 | INFO     | . payload execution = 143415 s
[2025-11-25 15:59:51] 2025-11-25 20:59:05,085 | INFO     | . stage-out = 49 s
[2025-11-25 15:59:51] 2025-11-25 20:59:05,085 | INFO     | . log creation = 18 s
[2025-11-25 15:59:51] 2025-11-25 20:59:05,085 | INFO     | ..............................
[2025-11-25 15:59:51] 2025-11-25 20:59:05,706 | INFO     | 
[2025-11-25 15:59:51] 2025-11-25 20:59:05,707 | INFO     | job summary report
[2025-11-25 15:59:51] 2025-11-25 20:59:05,707 | INFO     | --------------------------------------------------
[2025-11-25 15:59:51] 2025-11-25 20:59:05,707 | INFO     | PanDA job id: 6895330219
[2025-11-25 15:59:51] 2025-11-25 20:59:05,707 | INFO     | task id: 47556137
[2025-11-25 15:59:51] 2025-11-25 20:59:05,707 | INFO     | errors: (none)
[2025-11-25 15:59:51] 2025-11-25 20:59:05,707 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 15:59:51] 2025-11-25 20:59:05,708 | INFO     | pilot state: finished 
[2025-11-25 15:59:51] 2025-11-25 20:59:05,708 | INFO     | transexitcode: 0
[2025-11-25 15:59:51] 2025-11-25 20:59:05,708 | INFO     | exeerrorcode: 0
[2025-11-25 15:59:51] 2025-11-25 20:59:05,708 | INFO     | exeerrordiag: 
[2025-11-25 15:59:51] 2025-11-25 20:59:05,708 | INFO     | exitcode: 0
[2025-11-25 15:59:51] 2025-11-25 20:59:05,708 | INFO     | exitmsg: OK
[2025-11-25 15:59:51] 2025-11-25 20:59:05,708 | INFO     | cpuconsumptiontime: 320239 s
[2025-11-25 15:59:51] 2025-11-25 20:59:05,708 | INFO     | nevents: 1000
[2025-11-25 15:59:51] 2025-11-25 20:59:05,708 | INFO     | neventsw: 0
[2025-11-25 15:59:51] 2025-11-25 20:59:05,709 | INFO     | pid: 4165164
[2025-11-25 15:59:51] 2025-11-25 20:59:05,709 | INFO     | pgrp: 4165164
[2025-11-25 15:59:51] 2025-11-25 20:59:05,709 | INFO     | corecount: 12
[2025-11-25 15:59:51] 2025-11-25 20:59:05,709 | INFO     | event service: False
[2025-11-25 15:59:51] 2025-11-25 20:59:05,709 | INFO     | sizes: {0: 2298635, 1: 2298834, 2: 2298834, 13: 2298862, 25: 2298918, 36: 2298946, 39: 2299364, 47: 2299392, 143470: 2388581, 143474: 2388580, 143525: 2398426, 143
[2025-11-25 15:59:51] 2025-11-25 20:59:05,709 | INFO     | --------------------------------------------------
[2025-11-25 15:59:51] 2025-11-25 20:59:05,709 | INFO     | 
[2025-11-25 15:59:51] 2025-11-25 20:59:05,709 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-25 15:59:51] 2025-11-25 20:59:05,774 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 15:59:51] 2025-11-25 20:59:05,775 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 15:59:51] 2025-11-25 20:59:05,775 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 15:59:51] 2025-11-25 20:59:05,775 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 15:59:51] 2025-11-25 20:59:05,775 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 15:59:51] 2025-11-25 20:59:05,775 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 15:59:51] 2025-11-25 20:59:05,775 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 15:59:51] 2025-11-25 20:59:05,775 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 15:59:51] 2025-11-25 20:59:05,775 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 15:59:51] 2025-11-25 20:59:05,776 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 15:59:51] 2025-11-25 20:59:05,776 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 15:59:51] 2025-11-25 20:59:05,776 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 15:59:51] 2025-11-25 20:59:05,776 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 15:59:51] 2025-11-25 20:59:05,776 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 15:59:51] 2025-11-25 20:59:05,776 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 15:59:51] 2025-11-25 20:59:05,776 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 15:59:51] 2025-11-25 20:59:05,776 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 15:59:51] 2025-11-25 20:59:05,776 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 15:59:51] 2025-11-25 20:59:05,777 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 15:59:51] 2025-11-25 20:59:05,777 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 15:59:51] 2025-11-25 20:59:05,777 | INFO     | job 6895330219 has completed (purged errors)
[2025-11-25 15:59:51] 2025-11-25 20:59:05,777 | INFO     | overall cleanup function is called
[2025-11-25 15:59:51] 2025-11-25 20:59:06,821 | INFO     | --- collectZombieJob: --- 10, [4165164]
[2025-11-25 15:59:51] 2025-11-25 20:59:06,821 | INFO     | zombie collector waiting for pid 4165164
[2025-11-25 15:59:51] 2025-11-25 20:59:06,821 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 15:59:51] 2025-11-25 20:59:06,821 | INFO     | collected zombie processes
[2025-11-25 15:59:51] 2025-11-25 20:59:06,821 | INFO     | will attempt to kill all subprocesses of pid=4165164
[2025-11-25 15:59:51] 2025-11-25 20:59:10,083 | INFO     | process IDs to be killed: [4165164] (in reverse order)
[2025-11-25 15:59:51] 2025-11-25 20:59:11,106 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 15:59:51] 2025-11-25 20:59:11,107 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 15:59:51] 2025-11-25 20:59:11,212 | INFO     | did not find any defunct processes belonging to 4165164
[2025-11-25 15:59:51] 2025-11-25 20:59:11,301 | INFO     | did not find any defunct processes belonging to 4165164
[2025-11-25 15:59:51] 2025-11-25 20:59:11,540 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 15:59:51] 2025-11-25 20:59:11,540 | INFO     | ready for new job
[2025-11-25 15:59:51] 2025-11-25 20:59:11,541 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 15:59:51] 2025-11-25 20:59:11,756 | INFO     | ***************************************
[2025-11-25 15:59:51] 2025-11-25 20:59:11,756 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 15:59:51] 2025-11-25 20:59:11,756 | INFO     | ***************************************
[2025-11-25 15:59:51] 2025-11-25 20:59:11,756 | INFO     | 
[2025-11-25 15:59:51] 2025-11-25 20:59:11,861 | INFO     | architecture information:
[2025-11-25 15:59:51] 2025-11-25 20:59:11,875 | INFO     | executing command: cat /etc/os-release
[2025-11-25 15:59:51] 2025-11-25 20:59:12,098 | INFO     | cat /etc/os-release:
[2025-11-25 15:59:51] NAME="CentOS Linux"
[2025-11-25 15:59:51] VERSION="7 (Core)"
[2025-11-25 15:59:51] ID="centos"
[2025-11-25 15:59:51] ID_LIKE="rhel fedora"
[2025-11-25 15:59:51] VERSION_ID="7"
[2025-11-25 15:59:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 15:59:51] ANSI_COLOR="0;31"
[2025-11-25 15:59:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 15:59:51] HOME_URL="https://www.centos.org/"
[2025-11-25 15:59:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 15:59:51] 
[2025-11-25 15:59:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 15:59:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 15:59:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 15:59:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 15:59:51] 
[2025-11-25 15:59:51] 2025-11-25 20:59:12,099 | INFO     | ***************************************
[2025-11-25 15:59:51] 2025-11-25 20:59:12,633 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-25 15:59:51] 2025-11-25 20:59:12,915 | INFO     | sufficient remaining disk space (49948917760 B)
[2025-11-25 15:59:51] 2025-11-25 20:59:12,916 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 15:59:51] 2025-11-25 20:59:12,916 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 15:59:51] 2025-11-25 20:59:12,916 | INFO     | update_server=False
[2025-11-25 15:59:51] 2025-11-25 20:59:12,916 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 15:59:51] 2025-11-25 20:59:12,939 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 15:59:51] 2025-11-25 20:59:12,973 | INFO     | all job control threads have been joined
[2025-11-25 15:59:51] 2025-11-25 20:59:13,251 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 15:59:51] 2025-11-25 20:59:13,251 | INFO     | aborting loop
[2025-11-25 15:59:51] 2025-11-25 20:59:13,667 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 15:59:51] 2025-11-25 20:59:13,828 | INFO     | all data control threads have been joined
[2025-11-25 15:59:51] 2025-11-25 20:59:13,922 | INFO     | [job] retrieve thread has finished
[2025-11-25 15:59:51] 2025-11-25 20:59:13,981 | INFO     | [job] control thread has finished
[2025-11-25 15:59:51] 2025-11-25 20:59:14,042 | INFO     | [payload] validate_post thread has finished
[2025-11-25 15:59:51] 2025-11-25 20:59:14,098 | INFO     | all payload control threads have been joined
[2025-11-25 15:59:51] 2025-11-25 20:59:14,233 | INFO     | [payload] failed_post thread has finished
[2025-11-25 15:59:51] 2025-11-25 20:59:14,257 | INFO     | [job] job monitor thread has finished
[2025-11-25 15:59:51] 2025-11-25 20:59:14,769 | INFO     | [data] copytool_in thread has finished
[2025-11-25 15:59:51] 2025-11-25 20:59:14,779 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 15:59:51] 2025-11-25 20:59:14,799 | INFO     | [job] validate thread has finished
[2025-11-25 15:59:51] 2025-11-25 20:59:14,823 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 15:59:51] 2025-11-25 20:59:14,823 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 15:59:51] 2025-11-25 20:59:14,834 | INFO     | [data] control thread has finished
[2025-11-25 15:59:51] 2025-11-25 20:59:14,946 | INFO     | [data] copytool_out thread has finished
[2025-11-25 15:59:51] 2025-11-25 20:59:14,982 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 15:59:51] 2025-11-25 20:59:15,117 | INFO     | [payload] control thread has finished
[2025-11-25 15:59:51] 2025-11-25 20:59:15,149 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 15:59:51] 2025-11-25 20:59:15,988 | INFO     | [job] queue monitor thread has finished
[2025-11-25 15:59:51] 2025-11-25 20:59:17,676 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 15:59:51] 2025-11-25 20:59:23,877 | INFO     | [monitor] cgroup control has ended
[2025-11-25 15:59:51] 2025-11-25 20:59:25,894 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140587456608064)>', '<ExcThread(monitor, started 140586644379392)>']
[2025-11-25 15:59:51] 2025-11-25 20:59:30,927 | INFO     | all workflow threads have been joined
[2025-11-25 15:59:51] 2025-11-25 20:59:30,927 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 15:59:51] 2025-11-25 20:59:30,927 | INFO     | traces error code: 0
[2025-11-25 15:59:51] 2025-11-25 20:59:30,928 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 15:59:51] 2025-11-25 20:59:45,054 | INFO     | PID=4155094 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 15:59:51] 2025-11-25 20:59:45,081 | INFO     | .. there are 8 such processes running
[2025-11-25 15:59:51] 2025-11-25 20:59:45,082 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 15:59:51] 2025-11-25 20:59:45,082 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 15:59:51] 2025-11-25 20:59:45,082 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 15:59:51] 2025-11-25 20:59:45,083 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 15:59:51] 2025-11-25 20:59:45,083 | INFO     | [monitor] control thread has ended
[2025-11-25 15:59:51] 2025-11-25 20:59:48,484 [wrapper] ==== pilot stdout END ====
[2025-11-25 15:59:51] 2025-11-25 20:59:48,501 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 15:59:51] 2025-11-25 20:59:48,531 [wrapper] pilotpid: 4155094
[2025-11-25 15:59:51] 2025-11-25 20:59:48,602 [wrapper] Pilot exit status: 0
[2025-11-25 15:59:51] 2025-11-25 20:59:48,708 [wrapper] pandaids: 6895330219
[2025-11-25 15:59:51] 2025-11-25 20:59:49,078 [wrapper] cleanup supervisor_pilot 3148562 4155095
[2025-11-25 15:59:51] 2025-11-25 20:59:49,153 [wrapper] Test setup, not cleaning
[2025-11-25 15:59:51] 2025-11-25 20:59:49,179 [wrapper] apfmon messages muted
[2025-11-25 15:59:51] 2025-11-25 20:59:49,214 [wrapper] ==== wrapper stdout END ====
[2025-11-25 15:59:51] 2025-11-25 20:59:49,226 [wrapper] ==== wrapper stderr END ====
[2025-11-25 15:59:51]  *** Error codes and diagnostics ***
[2025-11-25 15:59:51]     "exeErrorCode": 0,
[2025-11-25 15:59:51]     "exeErrorDiag": "",
[2025-11-25 15:59:51]     "pilotErrorCode": 0,
[2025-11-25 15:59:51]     "pilotErrorDiag": "",
[2025-11-25 15:59:51]  *** Listing of results directory ***
[2025-11-25 15:59:51] total 1330024
[2025-11-25 15:59:51] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 14:48 pilot3.tar.gz
[2025-11-25 15:59:51] -rwx------. 1 boincer umatlas     36292 Nov 21 15:11 runpilot2-wrapper.sh
[2025-11-25 15:59:51] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 15:11 queuedata.json
[2025-11-25 15:59:51] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 15:59:51] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:03 run_atlas
[2025-11-25 15:59:51] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:03 job.xml
[2025-11-25 15:59:51] -rw-r--r--. 2 boincer umatlas 407857024 Nov 24 00:03 EVNT.47483658._000131.pool.root.1
[2025-11-25 15:59:51] -rw-r--r--. 2 boincer umatlas    590103 Nov 24 00:03 input.tar.gz
[2025-11-25 15:59:51] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:03 start_atlas.sh
[2025-11-25 15:59:51] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:03 shared
[2025-11-25 15:59:51] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:03 boinc_lockfile
[2025-11-25 15:59:51] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 00:03 pandaJob.out
[2025-11-25 15:59:51] -rw-------. 1 boincer umatlas        57 Nov 24 00:03 setup.sh.local
[2025-11-25 15:59:51] -rw-------. 1 boincer umatlas    989786 Nov 24 00:04 agis_schedconf.cvmfs.json
[2025-11-25 15:59:51] drwx------. 5 boincer umatlas      4096 Nov 24 00:04 pilot3
[2025-11-25 15:59:51] -rw-r--r--. 1 boincer umatlas       533 Nov 25 14:32 boinc_task_state.xml
[2025-11-25 15:59:51] -rw-------. 1 boincer umatlas 909478642 Nov 25 15:52 HITS.47556137._001304.pool.root.1
[2025-11-25 15:59:51] -rw-r--r--. 1 boincer umatlas      6663 Nov 25 15:54 init_data.xml
[2025-11-25 15:59:51] -rw-------. 1 boincer umatlas      1071 Nov 25 15:57 memory_monitor_summary.json
[2025-11-25 15:59:51] -rw-------. 1 boincer umatlas   1516240 Nov 25 15:57 agis_ddmendpoints.agis.ALL.json
[2025-11-25 15:59:51] -rw-------. 1 boincer umatlas   3504417 Nov 25 15:57 log.47556137._001304.job.log.tgz.1
[2025-11-25 15:59:51] -rw-------. 1 boincer umatlas      8658 Nov 25 15:59 heartbeat.json
[2025-11-25 15:59:51] -rw-------. 1 boincer umatlas        95 Nov 25 15:59 pilot_heartbeat.json
[2025-11-25 15:59:51] -rw-------. 1 boincer umatlas       822 Nov 25 15:59 pilotlog.txt
[2025-11-25 15:59:51] -rw-------. 1 boincer umatlas  16844588 Nov 25 15:59 log.47556137._001304.job.log.1
[2025-11-25 15:59:51] -rw-------. 1 boincer umatlas       353 Nov 25 15:59 output.list
[2025-11-25 15:59:51] -rw-r--r--. 1 boincer umatlas       620 Nov 25 15:59 runtime_log
[2025-11-25 15:59:51] -rw-------. 1 boincer umatlas  20367360 Nov 25 15:59 result.tar.gz
[2025-11-25 15:59:51] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 15:59 boinc_mmap_file
[2025-11-25 15:59:51] -rw-r--r--. 1 boincer umatlas        29 Nov 25 15:59 wrapper_checkpoint.txt
[2025-11-25 15:59:51] -rw-r--r--. 1 boincer umatlas      9346 Nov 25 15:59 runtime_log.err
[2025-11-25 15:59:51] -rw-------. 1 boincer umatlas       668 Nov 25 15:59 G49NDmdemg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmrnHKDmTYkNmm.diag
[2025-11-25 15:59:51] -rw-r--r--. 1 boincer umatlas     21802 Nov 25 15:59 stderr.txt
[2025-11-25 15:59:51] HITS file was successfully produced:
[2025-11-25 15:59:51] -rw-------. 1 boincer umatlas 909478642 Nov 25 15:52 shared/HITS.pool.root.1
[2025-11-25 15:59:51]  *** Contents of shared directory: ***
[2025-11-25 15:59:51] total 1306956
[2025-11-25 15:59:51] -rw-r--r--. 2 boincer umatlas 407857024 Nov 24 00:03 ATLAS.root_0
[2025-11-25 15:59:51] -rw-r--r--. 2 boincer umatlas    590103 Nov 24 00:03 input.tar.gz
[2025-11-25 15:59:51] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:03 start_atlas.sh
[2025-11-25 15:59:51] -rw-------. 1 boincer umatlas 909478642 Nov 25 15:52 HITS.pool.root.1
[2025-11-25 15:59:51] -rw-------. 1 boincer umatlas  20367360 Nov 25 15:59 result.tar.gz
15:59:53 (4150595): run_atlas exited; CPU time 322127.437834
15:59:53 (4150595): called boinc_finish(0)

</stderr_txt>
]]>

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