Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:19:52 (3393381): wrapper (7.7.26015): starting
21:19:52 (3393381): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 21:19:52] Arguments: --nthreads 8
[2025-11-23 21:19:52] Threads: 8
[2025-11-23 21:19:52] Checking for CVMFS
[2025-11-23 21:19:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 21:19:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 21:19:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 21:19:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 21:19:53] 2.13.3.0 9185 26517 315812 153229 1 109 22854858 32935936 22011 16776704 0 151494682 99.784 81471235 32036 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 21:19:53] CVMFS is ok
[2025-11-23 21:19:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 21:19:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 21:19:53] Further information can be found at the LHC@home message board.
[2025-11-23 21:19:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 21:19:53] Checking for apptainer binary...
[2025-11-23 21:19:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 21:19:53] Running /usr/bin/apptainer --version
[2025-11-23 21:19:53] apptainer version 1.4.4-1.el9
[2025-11-23 21:19:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 21:19:53] c-5-6.aglt2.org
[2025-11-23 21:19:53] apptainer works
[2025-11-23 21:19:53] Set ATHENA_PROC_NUMBER=8
[2025-11-23 21:19:53] Set ATHENA_CORE_NUMBER=8
[2025-11-23 21:19:53] Starting ATLAS job with PandaID=6895329437
[2025-11-23 21:19:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
03:20:03 (3393381): BOINC client no longer exists - exiting
03:20:03 (3393381): timer handler: client dead, exiting
03:31:50 (416372): wrapper (7.7.26015): starting
03:31:50 (416372): wrapper: running run_atlas (--nthreads 11)
[2025-11-24 03:31:50] Arguments: --nthreads 11
[2025-11-24 03:31:50] Threads: 11
[2025-11-24 03:31:50] This job has been restarted, cleaning up previous attempt
[2025-11-24 03:31:50] Checking for CVMFS
[2025-11-24 03:31:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 03:31:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 03:31:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 03:31:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 03:31:50] 2.13.3.0 9185 26889 314952 153239 1 64 28583030 32935937 25356 16776704 0 152980237 99.781 83099700 31992 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 03:31:50] CVMFS is ok
[2025-11-24 03:31:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 03:31:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 03:31:50] Further information can be found at the LHC@home message board.
[2025-11-24 03:31:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 03:31:50] Checking for apptainer binary...
[2025-11-24 03:31:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 03:31:50] Running /usr/bin/apptainer --version
[2025-11-24 03:31:50] apptainer version 1.4.4-1.el9
[2025-11-24 03:31:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 03:31:51] c-5-6.aglt2.org
[2025-11-24 03:31:51] apptainer works
[2025-11-24 03:31:51] Set ATHENA_PROC_NUMBER=11
[2025-11-24 03:31:51] Set ATHENA_CORE_NUMBER=11
[2025-11-24 03:31:51] Starting ATLAS job with PandaID=6895329437
[2025-11-24 03:31:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 20:14:57]  *** The last 200 lines of the pilot log: ***
[2025-11-24 20:14:57] 2025-11-25 01:14:10,670 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 20:14:57] 2025-11-25 01:14:10,671 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 20:14:57] 2025-11-25 01:14:10,692 | INFO     | fitting pss+swap vs Time
[2025-11-24 20:14:57] 2025-11-25 01:14:10,694 | INFO     | sum of square deviations: 296323719051.4858
[2025-11-24 20:14:57] 2025-11-25 01:14:10,721 | INFO     | sum of deviations: 2570081977698.009
[2025-11-24 20:14:57] 2025-11-25 01:14:10,722 | INFO     | mean x: 1764003162.4304569
[2025-11-24 20:14:57] 2025-11-25 01:14:10,722 | INFO     | mean y: 3352345.5329949236
[2025-11-24 20:14:57] 2025-11-25 01:14:10,722 | INFO     | intersect: -15296242134.708727
[2025-11-24 20:14:57] 2025-11-25 01:14:10,723 | INFO     | chi2: 7.297732191715394
[2025-11-24 20:14:57] 2025-11-25 01:14:10,725 | INFO     | sum of square deviations: 291834259951.203
[2025-11-24 20:14:57] 2025-11-25 01:14:10,750 | INFO     | sum of deviations: 2948701393376.2324
[2025-11-24 20:14:57] 2025-11-25 01:14:10,751 | INFO     | mean x: 1764003009.937755
[2025-11-24 20:14:57] 2025-11-25 01:14:10,751 | INFO     | mean y: 3365207.5775510203
[2025-11-24 20:14:57] 2025-11-25 01:14:10,751 | INFO     | intersect: -17820169747.478996
[2025-11-24 20:14:57] 2025-11-25 01:14:10,752 | INFO     | chi2: 4.213362242540636
[2025-11-24 20:14:57] 2025-11-25 01:14:10,752 | INFO     | current chi2=4.213362242540636 (change=42.26477305752913 %)
[2025-11-24 20:14:57] 2025-11-25 01:14:10,754 | INFO     | sum of square deviations: 287390323444.70355
[2025-11-24 20:14:57] 2025-11-25 01:14:10,780 | INFO     | sum of deviations: 3209741891797.3276
[2025-11-24 20:14:57] 2025-11-25 01:14:10,780 | INFO     | mean x: 1764002857.4441025
[2025-11-24 20:14:57] 2025-11-25 01:14:10,781 | INFO     | mean y: 3374158.638974359
[2025-11-24 20:14:57] 2025-11-25 01:14:10,781 | INFO     | intersect: -19698033324.128773
[2025-11-24 20:14:57] 2025-11-25 01:14:10,782 | INFO     | chi2: 2.502291355990686
[2025-11-24 20:14:57] 2025-11-25 01:14:10,782 | INFO     | current chi2=2.502291355990686 (change=40.610581005211245 %)
[2025-11-24 20:14:57] 2025-11-25 01:14:10,783 | INFO     | sum of square deviations: 282991677396.5248
[2025-11-24 20:14:57] 2025-11-25 01:14:10,806 | INFO     | sum of deviations: 3288965102289.103
[2025-11-24 20:14:57] 2025-11-25 01:14:10,806 | INFO     | mean x: 1764002704.9494846
[2025-11-24 20:14:57] 2025-11-25 01:14:10,806 | INFO     | mean y: 3376898.0020618555
[2025-11-24 20:14:57] 2025-11-25 01:14:10,807 | INFO     | intersect: -20498085866.901436
[2025-11-24 20:14:57] 2025-11-25 01:14:10,808 | INFO     | chi2: 2.140129971888405
[2025-11-24 20:14:57] 2025-11-25 01:14:10,808 | INFO     | current chi2=2.140129971888405 (change=14.473190071781117 %)
[2025-11-24 20:14:57] 2025-11-25 01:14:10,808 | INFO     | right removable region: 969
[2025-11-24 20:14:57] 2025-11-25 01:14:10,809 | INFO     | sum of square deviations: 291833520268.9502
[2025-11-24 20:14:57] 2025-11-25 01:14:10,834 | INFO     | sum of deviations: 2280822703778.1235
[2025-11-24 20:14:57] 2025-11-25 01:14:10,834 | INFO     | mean x: 1764003314.9357142
[2025-11-24 20:14:57] 2025-11-25 01:14:10,834 | INFO     | mean y: 3362155.319387755
[2025-11-24 20:14:57] 2025-11-25 01:14:10,834 | INFO     | intersect: -13783192612.403498
[2025-11-24 20:14:57] 2025-11-25 01:14:10,835 | INFO     | chi2: 5.337697432565895
[2025-11-24 20:14:57] 2025-11-25 01:14:10,836 | INFO     | current chi2=5.337697432565895 (change=26.85813493367967 %)
[2025-11-24 20:14:57] 2025-11-25 01:14:10,837 | INFO     | sum of square deviations: 287389562526.9372
[2025-11-24 20:14:57] 2025-11-25 01:14:10,863 | INFO     | sum of deviations: 2183273108574.09
[2025-11-24 20:14:57] 2025-11-25 01:14:10,863 | INFO     | mean x: 1764003467.4297435
[2025-11-24 20:14:57] 2025-11-25 01:14:10,864 | INFO     | mean y: 3365502.1692307694
[2025-11-24 20:14:57] 2025-11-25 01:14:10,864 | INFO     | intersect: -13397612946.760433
[2025-11-24 20:14:57] 2025-11-25 01:14:10,865 | INFO     | chi2: 5.259727444707855
[2025-11-24 20:14:57] 2025-11-25 01:14:10,865 | INFO     | current chi2=5.259727444707855 (change=1.4607419930237264 %)
[2025-11-24 20:14:57] 2025-11-25 01:14:10,865 | INFO     | left removable region: 20
[2025-11-24 20:14:57] 2025-11-25 01:14:10,867 | INFO     | sum of square deviations: 265006755983.51956
[2025-11-24 20:14:57] 2025-11-25 01:14:10,900 | INFO     | sum of deviations: 2757612716460.76
[2025-11-24 20:14:57] 2025-11-25 01:14:10,900 | INFO     | mean x: 1764003284.4373024
[2025-11-24 20:14:57] 2025-11-25 01:14:10,900 | INFO     | mean y: 3395093.3572181244
[2025-11-24 20:14:57] 2025-11-25 01:14:10,900 | INFO     | intersect: -18352506328.81394
[2025-11-24 20:14:57] 2025-11-25 01:14:10,902 | INFO     | chi2: 0.046290015744745734
[2025-11-24 20:14:57] 2025-11-25 01:14:10,902 | INFO     | current memory leak: 10.41 B/s (using 949 data points, chi2=0.05)
[2025-11-24 20:14:57] 2025-11-25 01:14:10,903 | INFO     | could have reported an average CPU frequency of 2600 MHz (36 samples)
[2025-11-24 20:14:57] 2025-11-25 01:14:10,903 | INFO     | ..............................
[2025-11-24 20:14:57] 2025-11-25 01:14:10,903 | INFO     | . Timing measurements:
[2025-11-24 20:14:57] 2025-11-25 01:14:10,903 | INFO     | . get job = 0 s
[2025-11-24 20:14:57] 2025-11-25 01:14:10,903 | INFO     | . initial setup = 2 s
[2025-11-24 20:14:57] 2025-11-25 01:14:10,903 | INFO     | . payload setup = 6 s
[2025-11-24 20:14:57] 2025-11-25 01:14:10,904 | INFO     | . stage-in = 0 s
[2025-11-24 20:14:57] 2025-11-25 01:14:10,904 | INFO     | . payload execution = 60084 s
[2025-11-24 20:14:57] 2025-11-25 01:14:10,904 | INFO     | . stage-out = 4 s
[2025-11-24 20:14:57] 2025-11-25 01:14:10,904 | INFO     | . log creation = 1 s
[2025-11-24 20:14:57] 2025-11-25 01:14:10,904 | INFO     | ..............................
[2025-11-24 20:14:57] 2025-11-25 01:14:11,007 | INFO     | 
[2025-11-24 20:14:57] 2025-11-25 01:14:11,007 | INFO     | job summary report
[2025-11-24 20:14:57] 2025-11-25 01:14:11,008 | INFO     | --------------------------------------------------
[2025-11-24 20:14:57] 2025-11-25 01:14:11,008 | INFO     | PanDA job id: 6895329437
[2025-11-24 20:14:57] 2025-11-25 01:14:11,008 | INFO     | task id: 47556149
[2025-11-24 20:14:57] 2025-11-25 01:14:11,008 | INFO     | errors: (none)
[2025-11-24 20:14:57] 2025-11-25 01:14:11,009 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 20:14:57] 2025-11-25 01:14:11,009 | INFO     | pilot state: finished 
[2025-11-24 20:14:57] 2025-11-25 01:14:11,009 | INFO     | transexitcode: 0
[2025-11-24 20:14:57] 2025-11-25 01:14:11,009 | INFO     | exeerrorcode: 0
[2025-11-24 20:14:57] 2025-11-25 01:14:11,009 | INFO     | exeerrordiag: 
[2025-11-24 20:14:57] 2025-11-25 01:14:11,009 | INFO     | exitcode: 0
[2025-11-24 20:14:57] 2025-11-25 01:14:11,009 | INFO     | exitmsg: OK
[2025-11-24 20:14:57] 2025-11-25 01:14:11,010 | INFO     | cpuconsumptiontime: 305898 s
[2025-11-24 20:14:57] 2025-11-25 01:14:11,010 | INFO     | nevents: 1000
[2025-11-24 20:14:57] 2025-11-25 01:14:11,010 | INFO     | neventsw: 0
[2025-11-24 20:14:57] 2025-11-25 01:14:11,010 | INFO     | pid: 437640
[2025-11-24 20:14:57] 2025-11-25 01:14:11,010 | INFO     | pgrp: 437640
[2025-11-24 20:14:57] 2025-11-25 01:14:11,010 | INFO     | corecount: 11
[2025-11-24 20:14:57] 2025-11-25 01:14:11,010 | INFO     | event service: False
[2025-11-24 20:14:57] 2025-11-25 01:14:11,010 | INFO     | sizes: {0: 2298804, 5: 2299066, 11: 2299122, 60093: 2351705, 60099: 2361546, 60113: 2361736}
[2025-11-24 20:14:57] 2025-11-25 01:14:11,010 | INFO     | --------------------------------------------------
[2025-11-24 20:14:57] 2025-11-25 01:14:11,011 | INFO     | 
[2025-11-24 20:14:57] 2025-11-25 01:14:11,011 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-24 20:14:57] 2025-11-25 01:14:11,033 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 20:14:57] 2025-11-25 01:14:11,034 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 20:14:57] 2025-11-25 01:14:11,034 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 20:14:57] 2025-11-25 01:14:11,034 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 20:14:57] 2025-11-25 01:14:11,034 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 20:14:57] 2025-11-25 01:14:11,034 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 20:14:57] 2025-11-25 01:14:11,034 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 20:14:57] 2025-11-25 01:14:11,035 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 20:14:57] 2025-11-25 01:14:11,035 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 20:14:57] 2025-11-25 01:14:11,035 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 20:14:57] 2025-11-25 01:14:11,035 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 20:14:57] 2025-11-25 01:14:11,035 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 20:14:57] 2025-11-25 01:14:11,035 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 20:14:57] 2025-11-25 01:14:11,035 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 20:14:57] 2025-11-25 01:14:11,035 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 20:14:57] 2025-11-25 01:14:11,035 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 20:14:57] 2025-11-25 01:14:11,036 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 20:14:57] 2025-11-25 01:14:11,036 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 20:14:57] 2025-11-25 01:14:11,036 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 20:14:57] 2025-11-25 01:14:11,036 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 20:14:57] 2025-11-25 01:14:11,036 | INFO     | job 6895329437 has completed (purged errors)
[2025-11-24 20:14:57] 2025-11-25 01:14:11,037 | INFO     | overall cleanup function is called
[2025-11-24 20:14:57] 2025-11-25 01:14:12,062 | INFO     | --- collectZombieJob: --- 10, [437640]
[2025-11-24 20:14:57] 2025-11-25 01:14:12,063 | INFO     | zombie collector waiting for pid 437640
[2025-11-24 20:14:57] 2025-11-25 01:14:12,063 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 20:14:57] 2025-11-25 01:14:12,063 | INFO     | collected zombie processes
[2025-11-24 20:14:57] 2025-11-25 01:14:12,063 | INFO     | will attempt to kill all subprocesses of pid=437640
[2025-11-24 20:14:57] 2025-11-25 01:14:12,626 | INFO     | process IDs to be killed: [437640] (in reverse order)
[2025-11-24 20:14:57] 2025-11-25 01:14:12,814 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 20:14:57] 2025-11-25 01:14:12,815 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 20:14:57] 2025-11-25 01:14:12,832 | INFO     | did not find any defunct processes belonging to 437640
[2025-11-24 20:14:57] 2025-11-25 01:14:12,849 | INFO     | did not find any defunct processes belonging to 437640
[2025-11-24 20:14:57] 2025-11-25 01:14:12,850 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 20:14:57] 2025-11-25 01:14:12,850 | INFO     | ready for new job
[2025-11-24 20:14:57] 2025-11-25 01:14:12,851 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 20:14:57] 2025-11-25 01:14:12,855 | INFO     | ***************************************
[2025-11-24 20:14:57] 2025-11-25 01:14:12,855 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 20:14:57] 2025-11-25 01:14:12,855 | INFO     | ***************************************
[2025-11-24 20:14:57] 2025-11-25 01:14:12,856 | INFO     | 
[2025-11-24 20:14:57] 2025-11-25 01:14:12,858 | INFO     | architecture information:
[2025-11-24 20:14:57] 2025-11-25 01:14:12,858 | INFO     | executing command: cat /etc/os-release
[2025-11-24 20:14:57] 2025-11-25 01:14:12,878 | INFO     | cat /etc/os-release:
[2025-11-24 20:14:57] NAME="CentOS Linux"
[2025-11-24 20:14:57] VERSION="7 (Core)"
[2025-11-24 20:14:57] ID="centos"
[2025-11-24 20:14:57] ID_LIKE="rhel fedora"
[2025-11-24 20:14:57] VERSION_ID="7"
[2025-11-24 20:14:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 20:14:57] ANSI_COLOR="0;31"
[2025-11-24 20:14:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 20:14:57] HOME_URL="https://www.centos.org/"
[2025-11-24 20:14:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 20:14:57] 
[2025-11-24 20:14:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 20:14:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 20:14:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 20:14:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 20:14:57] 
[2025-11-24 20:14:57] 2025-11-25 01:14:12,878 | INFO     | ***************************************
[2025-11-24 20:14:57] 2025-11-25 01:14:13,385 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-24 20:14:57] 2025-11-25 01:14:13,411 | INFO     | sufficient remaining disk space (72395784192 B)
[2025-11-24 20:14:57] 2025-11-25 01:14:13,411 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 20:14:57] 2025-11-25 01:14:13,411 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 20:14:57] 2025-11-25 01:14:13,411 | INFO     | update_server=False
[2025-11-24 20:14:57] 2025-11-25 01:14:13,412 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 20:14:57] 2025-11-25 01:14:13,412 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 20:14:57] 2025-11-25 01:14:13,413 | INFO     | aborting loop
[2025-11-24 20:14:57] 2025-11-25 01:14:13,415 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 20:14:57] 2025-11-25 01:14:13,436 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 20:14:57] 2025-11-25 01:14:14,387 | INFO     | all data control threads have been joined
[2025-11-24 20:14:57] 2025-11-25 01:14:14,417 | INFO     | [job] retrieve thread has finished
[2025-11-24 20:14:57] 2025-11-25 01:14:14,418 | INFO     | [job] job monitor thread has finished
[2025-11-24 20:14:57] 2025-11-25 01:14:14,432 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 20:14:57] 2025-11-25 01:14:14,767 | INFO     | all payload control threads have been joined
[2025-11-24 20:14:57] 2025-11-25 01:14:14,933 | INFO     | [payload] failed_post thread has finished
[2025-11-24 20:14:57] 2025-11-25 01:14:14,962 | INFO     | [data] copytool_in thread has finished
[2025-11-24 20:14:57] 2025-11-25 01:14:14,967 | INFO     | [job] validate thread has finished
[2025-11-24 20:14:57] 2025-11-25 01:14:15,127 | INFO     | all job control threads have been joined
[2025-11-24 20:14:57] 2025-11-25 01:14:15,294 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 20:14:57] 2025-11-25 01:14:15,365 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 20:14:57] 2025-11-25 01:14:15,392 | INFO     | [data] control thread has finished
[2025-11-24 20:14:57] 2025-11-25 01:14:15,408 | INFO     | [payload] validate_post thread has finished
[2025-11-24 20:14:57] 2025-11-25 01:14:15,443 | INFO     | [data] copytool_out thread has finished
[2025-11-24 20:14:57] 2025-11-25 01:14:15,642 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 20:14:57] 2025-11-25 01:14:15,773 | INFO     | [payload] control thread has finished
[2025-11-24 20:14:57] 2025-11-25 01:14:16,026 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 20:14:57] 2025-11-25 01:14:16,132 | INFO     | [job] control thread has finished
[2025-11-24 20:14:57] 2025-11-25 01:14:17,038 | INFO     | [job] queue monitor thread has finished
[2025-11-24 20:14:57] 2025-11-25 01:14:17,429 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 20:14:57] 2025-11-25 01:14:42,919 | INFO     | PID=423704 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 20:14:57] 2025-11-25 01:14:42,920 | INFO     | .. there are 41 such processes running
[2025-11-24 20:14:57] 2025-11-25 01:14:42,920 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 20:14:57] 2025-11-25 01:14:42,920 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 20:14:57] 2025-11-25 01:14:42,921 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 20:14:57] 2025-11-25 01:14:48,900 | INFO     | [monitor] cgroup control has ended
[2025-11-24 20:14:57] 2025-11-25 01:14:51,028 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139686700750656)>', '<ExcThread(monitor, started 139686194427648)>']
[2025-11-24 20:14:57] 2025-11-25 01:14:51,982 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 20:14:57] 2025-11-25 01:14:51,983 | INFO     | [monitor] control thread has ended
[2025-11-24 20:14:57] 2025-11-25 01:14:56,055 | INFO     | all workflow threads have been joined
[2025-11-24 20:14:57] 2025-11-25 01:14:56,056 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 20:14:57] 2025-11-25 01:14:56,056 | INFO     | traces error code: 0
[2025-11-24 20:14:57] 2025-11-25 01:14:56,056 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 20:14:57] 2025-11-25 01:14:56,245 [wrapper] ==== pilot stdout END ====
[2025-11-24 20:14:57] 2025-11-25 01:14:56,308 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 20:14:57] 2025-11-25 01:14:56,317 [wrapper] pilotpid: 423704
[2025-11-24 20:14:57] 2025-11-25 01:14:56,325 [wrapper] Pilot exit status: 0
[2025-11-24 20:14:57] 2025-11-25 01:14:56,411 [wrapper] pandaids: 6895329437 6895329437
[2025-11-24 20:14:57] 2025-11-25 01:14:56,613 [wrapper] cleanup supervisor_pilot 3367856 423705
[2025-11-24 20:14:57] 2025-11-25 01:14:56,622 [wrapper] Test setup, not cleaning
[2025-11-24 20:14:57] 2025-11-25 01:14:56,632 [wrapper] apfmon messages muted
[2025-11-24 20:14:57] 2025-11-25 01:14:56,642 [wrapper] ==== wrapper stdout END ====
[2025-11-24 20:14:57] 2025-11-25 01:14:56,652 [wrapper] ==== wrapper stderr END ====
[2025-11-24 20:14:57]  *** Error codes and diagnostics ***
[2025-11-24 20:14:57]     "exeErrorCode": 0,
[2025-11-24 20:14:57]     "exeErrorDiag": "",
[2025-11-24 20:14:57]     "pilotErrorCode": 0,
[2025-11-24 20:14:57]     "pilotErrorDiag": "",
[2025-11-24 20:14:57]  *** Listing of results directory ***
[2025-11-24 20:14:57] total 1720908
[2025-11-24 20:14:57] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-24 20:14:57] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 14:29 pilot3.tar.gz
[2025-11-24 20:14:57] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 14:31 queuedata.json
[2025-11-24 20:14:57] -rwx------. 1 boincer umatlas     36292 Nov 21 14:33 runpilot2-wrapper.sh
[2025-11-24 20:14:57] -rw-r--r--. 1 boincer umatlas       100 Nov 23 21:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 20:14:57] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 21:19 run_atlas
[2025-11-24 20:14:57] -rw-r--r--. 1 boincer umatlas       105 Nov 23 21:19 job.xml
[2025-11-24 20:14:57] -rw-r--r--. 3 boincer umatlas 408972875 Nov 23 21:19 EVNT.47483658._001037.pool.root.1
[2025-11-24 20:14:57] -rw-r--r--. 3 boincer umatlas 408972875 Nov 23 21:19 ATLAS.root_0
[2025-11-24 20:14:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 21:19 start_atlas.sh
[2025-11-24 20:14:57] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 21:19 shared
[2025-11-24 20:14:57] -rw-r--r--. 2 boincer umatlas    590103 Nov 23 21:19 input.tar.gz
[2025-11-24 20:14:57] -rw-r--r--. 1 boincer umatlas         0 Nov 23 21:19 boinc_lockfile
[2025-11-24 20:14:57] -rw-r--r--. 1 boincer umatlas      2784 Nov 24 03:31 pandaJob.out
[2025-11-24 20:14:57] -rw-------. 1 boincer umatlas        57 Nov 24 03:31 setup.sh.local
[2025-11-24 20:14:57] -rw-------. 1 boincer umatlas    989794 Nov 24 03:32 agis_schedconf.cvmfs.json
[2025-11-24 20:14:57] -rw-r--r--. 1 boincer umatlas       533 Nov 24 19:59 boinc_task_state.xml
[2025-11-24 20:14:57] -rw-r--r--. 1 boincer umatlas      6659 Nov 24 20:09 init_data.xml
[2025-11-24 20:14:57] -rw-------. 1 boincer umatlas 919860004 Nov 24 20:13 HITS.47556149._000234.pool.root.1
[2025-11-24 20:14:57] -rw-------. 1 boincer umatlas      1070 Nov 24 20:13 memory_monitor_summary.json
[2025-11-24 20:14:57] -rw-------. 1 boincer umatlas   1516227 Nov 24 20:13 agis_ddmendpoints.agis.ALL.json
[2025-11-24 20:14:57] -rw-------. 1 boincer umatlas   2475105 Nov 24 20:13 log.47556149._000234.job.log.tgz.1
[2025-11-24 20:14:57] -rw-------. 1 boincer umatlas      8652 Nov 24 20:14 heartbeat.json
[2025-11-24 20:14:57] -rw-------. 1 boincer umatlas        96 Nov 24 20:14 pilot_heartbeat.json
[2025-11-24 20:14:57] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 20:14 boinc_mmap_file
[2025-11-24 20:14:57] -rw-r--r--. 1 boincer umatlas        29 Nov 24 20:14 wrapper_checkpoint.txt
[2025-11-24 20:14:57] -rw-------. 1 boincer umatlas      4823 Nov 24 20:14 pilotlog.txt
[2025-11-24 20:14:57] -rw-------. 1 boincer umatlas   7764192 Nov 24 20:14 log.47556149._000234.job.log.1
[2025-11-24 20:14:57] -rw-------. 1 boincer umatlas       353 Nov 24 20:14 output.list
[2025-11-24 20:14:57] -rw-r--r--. 1 boincer umatlas       620 Nov 24 20:14 runtime_log
[2025-11-24 20:14:57] -rw-------. 1 boincer umatlas  10260480 Nov 24 20:14 result.tar.gz
[2025-11-24 20:14:57] -rw-r--r--. 1 boincer umatlas      9415 Nov 24 20:14 runtime_log.err
[2025-11-24 20:14:57] -rw-------. 1 boincer umatlas       787 Nov 24 20:14 2vnKDmq3lg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQgJKDmzWcjem.diag
[2025-11-24 20:14:57] -rw-r--r--. 1 boincer umatlas     23371 Nov 24 20:14 stderr.txt
[2025-11-24 20:14:57] HITS file was successfully produced:
[2025-11-24 20:14:57] -rw-------. 1 boincer umatlas 919860004 Nov 24 20:13 shared/HITS.pool.root.1
[2025-11-24 20:14:57]  *** Contents of shared directory: ***
[2025-11-24 20:14:57] total 1308316
[2025-11-24 20:14:57] -rw-r--r--. 3 boincer umatlas 408972875 Nov 23 21:19 ATLAS.root_0
[2025-11-24 20:14:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 21:19 start_atlas.sh
[2025-11-24 20:14:57] -rw-r--r--. 2 boincer umatlas    590103 Nov 23 21:19 input.tar.gz
[2025-11-24 20:14:57] -rw-------. 1 boincer umatlas 919860004 Nov 24 20:13 HITS.pool.root.1
[2025-11-24 20:14:57] -rw-------. 1 boincer umatlas  10260480 Nov 24 20:14 result.tar.gz
20:15:18 (416372): run_atlas exited; CPU time 307181.220362
20:15:18 (416372): called boinc_finish(0)

</stderr_txt>
]]>

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