Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:06:12 (4028806): wrapper (7.7.26015): starting
00:06:12 (4028806): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 00:06:12] Arguments: --nthreads 8
[2025-11-23 00:06:12] Threads: 8
[2025-11-23 00:06:12] Checking for CVMFS
[2025-11-23 00:06:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:06:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:06:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:06:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:06:13] 2.13.2.0 6465 29077 404684 153197 1 143 21151498 40960000 17006 16776704 0 88060740 99.573 89527380 37760 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 00:06:13] CVMFS is ok
[2025-11-23 00:06:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:06:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 00:06:13] Further information can be found at the LHC@home message board.
[2025-11-23 00:06:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:06:13] Checking for apptainer binary...
[2025-11-23 00:06:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:06:13] Running /usr/bin/apptainer --version
[2025-11-23 00:06:14] apptainer version 1.4.4-1.el9
[2025-11-23 00:06:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:06:15] c-206-40.aglt2.org
[2025-11-23 00:06:15] apptainer works
[2025-11-23 00:06:15] Set ATHENA_PROC_NUMBER=8
[2025-11-23 00:06:15] Set ATHENA_CORE_NUMBER=8
[2025-11-23 00:06:15] Starting ATLAS job with PandaID=6895337376
[2025-11-23 00:06:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 16:48:51]  *** The last 200 lines of the pilot log: ***
[2025-11-24 16:48:51] 2025-11-24 18:07:40,153 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 16:48:51] 2025-11-24 18:07:40,158 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3291.29471875
[2025-11-24 16:48:51] 2025-11-24 18:07:40,169 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6895337376/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 16:48:51] 2025-11-24 18:07:40,170 | INFO     | extracted standard info from prmon json
[2025-11-24 16:48:51] 2025-11-24 18:07:40,170 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 16:48:51] 2025-11-24 18:07:40,170 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 16:48:51] 2025-11-24 18:07:40,198 | INFO     | fitting pss+swap vs Time
[2025-11-24 16:48:51] 2025-11-24 18:07:40,200 | INFO     | sum of square deviations: 3221236758089.9146
[2025-11-24 16:48:51] 2025-11-24 18:07:40,324 | INFO     | sum of deviations: 10794551760729.494
[2025-11-24 16:48:51] 2025-11-24 18:07:40,325 | INFO     | mean x: 1763941101.8368468
[2025-11-24 16:48:51] 2025-11-24 18:07:40,325 | INFO     | mean y: 2869838.4761686525
[2025-11-24 16:48:51] 2025-11-24 18:07:40,325 | INFO     | intersect: -5908199404.986303
[2025-11-24 16:48:51] 2025-11-24 18:07:40,329 | INFO     | chi2: 7.584364338045442
[2025-11-24 16:48:51] 2025-11-24 18:07:40,331 | INFO     | sum of square deviations: 3199143843180.0503
[2025-11-24 16:48:51] 2025-11-24 18:07:40,548 | INFO     | sum of deviations: 11582745814794.021
[2025-11-24 16:48:51] 2025-11-24 18:07:40,548 | INFO     | mean x: 1763940949.342214
[2025-11-24 16:48:51] 2025-11-24 18:07:40,548 | INFO     | mean y: 2875279.205328434
[2025-11-24 16:48:51] 2025-11-24 18:07:40,548 | INFO     | intersect: -6383608308.299754
[2025-11-24 16:48:51] 2025-11-24 18:07:40,554 | INFO     | chi2: 3.9947158973506163
[2025-11-24 16:48:51] 2025-11-24 18:07:40,554 | INFO     | current chi2=3.9947158973506163 (change=47.32958862073746 %)
[2025-11-24 16:48:51] 2025-11-24 18:07:40,557 | INFO     | sum of square deviations: 3177152053433.2593
[2025-11-24 16:48:51] 2025-11-24 18:07:40,681 | INFO     | sum of deviations: 11699241756947.232
[2025-11-24 16:48:51] 2025-11-24 18:07:40,682 | INFO     | mean x: 1763940796.8471456
[2025-11-24 16:48:51] 2025-11-24 18:07:40,682 | INFO     | mean y: 2876086.22053407
[2025-11-24 16:48:51] 2025-11-24 18:07:40,682 | INFO     | intersect: -6492491299.472139
[2025-11-24 16:48:51] 2025-11-24 18:07:40,693 | INFO     | chi2: 3.7811634230685023
[2025-11-24 16:48:51] 2025-11-24 18:07:40,693 | INFO     | current chi2=3.7811634230685023 (change=5.345873893654032 %)
[2025-11-24 16:48:51] 2025-11-24 18:07:40,693 | INFO     | right removable region: 2171
[2025-11-24 16:48:51] 2025-11-24 18:07:40,695 | INFO     | sum of square deviations: 3199140732790.047
[2025-11-24 16:48:51] 2025-11-24 18:07:40,860 | INFO     | sum of deviations: 10012206905041.086
[2025-11-24 16:48:51] 2025-11-24 18:07:40,860 | INFO     | mean x: 1763941254.342214
[2025-11-24 16:48:51] 2025-11-24 18:07:40,860 | INFO     | mean y: 2875236.8576022047
[2025-11-24 16:48:51] 2025-11-24 18:07:40,860 | INFO     | intersect: -5517652392.887971
[2025-11-24 16:48:51] 2025-11-24 18:07:40,862 | INFO     | chi2: 4.201360029168324
[2025-11-24 16:48:51] 2025-11-24 18:07:40,862 | INFO     | current chi2=4.201360029168324 (change=44.60498148680643 %)
[2025-11-24 16:48:51] 2025-11-24 18:07:40,868 | INFO     | sum of square deviations: 3177147558418.8374
[2025-11-24 16:48:51] 2025-11-24 18:07:40,965 | INFO     | sum of deviations: 9814878850550.527
[2025-11-24 16:48:51] 2025-11-24 18:07:40,965 | INFO     | mean x: 1763941406.842081
[2025-11-24 16:48:51] 2025-11-24 18:07:40,965 | INFO     | mean y: 2876605.0773480665
[2025-11-24 16:48:51] 2025-11-24 18:07:40,965 | INFO     | intersect: -5446310406.003981
[2025-11-24 16:48:51] 2025-11-24 18:07:40,967 | INFO     | chi2: 4.100788240644324
[2025-11-24 16:48:51] 2025-11-24 18:07:40,967 | INFO     | current chi2=4.100788240644324 (change=2.393791244401134 %)
[2025-11-24 16:48:51] 2025-11-24 18:07:40,967 | INFO     | left removable region: 20
[2025-11-24 16:48:51] 2025-11-24 18:07:40,969 | INFO     | sum of square deviations: 3085882924655.8423
[2025-11-24 16:48:51] 2025-11-24 18:07:41,263 | INFO     | sum of deviations: 10384948634202.629
[2025-11-24 16:48:51] 2025-11-24 18:07:41,263 | INFO     | mean x: 1763941376.3417015
[2025-11-24 16:48:51] 2025-11-24 18:07:41,263 | INFO     | mean y: 2885105.835890284
[2025-11-24 16:48:51] 2025-11-24 18:07:41,263 | INFO     | intersect: -5933322143.211399
[2025-11-24 16:48:51] 2025-11-24 18:07:41,265 | INFO     | chi2: 0.17502177562553203
[2025-11-24 16:48:51] 2025-11-24 18:07:41,265 | INFO     | current memory leak: 3.37 B/s (using 2151 data points, chi2=0.18)
[2025-11-24 16:48:51] 2025-11-24 18:07:41,280 | INFO     | could have reported an average CPU frequency of 3254 MHz (76 samples)
[2025-11-24 16:48:51] 2025-11-24 18:07:41,280 | INFO     | ..............................
[2025-11-24 16:48:51] 2025-11-24 18:07:41,280 | INFO     | . Timing measurements:
[2025-11-24 16:48:51] 2025-11-24 18:07:41,280 | INFO     | . get job = 0 s
[2025-11-24 16:48:51] 2025-11-24 18:07:41,280 | INFO     | . initial setup = 6 s
[2025-11-24 16:48:51] 2025-11-24 18:07:41,280 | INFO     | . payload setup = 30 s
[2025-11-24 16:48:51] 2025-11-24 18:07:41,280 | INFO     | . stage-in = 0 s
[2025-11-24 16:48:51] 2025-11-24 18:07:41,280 | INFO     | . payload execution = 133085 s
[2025-11-24 16:48:51] 2025-11-24 18:07:41,281 | INFO     | . stage-out = 4 s
[2025-11-24 16:48:51] 2025-11-24 18:07:41,281 | INFO     | . log creation = 1 s
[2025-11-24 16:48:51] 2025-11-24 18:07:41,281 | INFO     | ..............................
[2025-11-24 16:48:51] 2025-11-24 18:07:41,713 | INFO     | 
[2025-11-24 16:48:51] 2025-11-24 18:07:41,713 | INFO     | job summary report
[2025-11-24 16:48:51] 2025-11-24 18:07:41,713 | INFO     | --------------------------------------------------
[2025-11-24 16:48:51] 2025-11-24 18:07:41,713 | INFO     | PanDA job id: 6895337376
[2025-11-24 16:48:51] 2025-11-24 18:07:41,713 | INFO     | task id: 47556137
[2025-11-24 16:48:51] 2025-11-24 18:07:41,713 | INFO     | errors: (none)
[2025-11-24 16:48:51] 2025-11-24 18:07:41,714 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 16:48:51] 2025-11-24 18:07:41,714 | INFO     | pilot state: finished 
[2025-11-24 16:48:51] 2025-11-24 18:07:41,714 | INFO     | transexitcode: 0
[2025-11-24 16:48:51] 2025-11-24 18:07:41,714 | INFO     | exeerrorcode: 0
[2025-11-24 16:48:51] 2025-11-24 18:07:41,714 | INFO     | exeerrordiag: 
[2025-11-24 16:48:51] 2025-11-24 18:07:41,714 | INFO     | exitcode: 0
[2025-11-24 16:48:51] 2025-11-24 18:07:41,714 | INFO     | exitmsg: OK
[2025-11-24 16:48:51] 2025-11-24 18:07:41,714 | INFO     | cpuconsumptiontime: 203016 s
[2025-11-24 16:48:51] 2025-11-24 18:07:41,714 | INFO     | nevents: 1000
[2025-11-24 16:48:51] 2025-11-24 18:07:41,714 | INFO     | neventsw: 0
[2025-11-24 16:48:51] 2025-11-24 18:07:41,714 | INFO     | pid: 4077780
[2025-11-24 16:48:51] 2025-11-24 18:07:41,714 | INFO     | pgrp: 4077780
[2025-11-24 16:48:51] 2025-11-24 18:07:41,714 | INFO     | corecount: 8
[2025-11-24 16:48:51] 2025-11-24 18:07:41,714 | INFO     | event service: False
[2025-11-24 16:48:51] 2025-11-24 18:07:41,714 | INFO     | sizes: {0: 2297877, 1: 2298733, 12: 2298733, 23: 2298761, 34: 2299051, 45: 2299079, 133119: 2385982, 133125: 2395767, 133126: 2395823, 133137: 2396069}
[2025-11-24 16:48:51] 2025-11-24 18:07:41,714 | INFO     | --------------------------------------------------
[2025-11-24 16:48:51] 2025-11-24 18:07:41,714 | INFO     | 
[2025-11-24 16:48:51] 2025-11-24 18:07:41,715 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-24 16:48:51] 2025-11-24 18:07:41,829 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 16:48:51] 2025-11-24 18:07:41,830 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 16:48:51] 2025-11-24 18:07:41,830 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 16:48:51] 2025-11-24 18:07:41,830 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 16:48:51] 2025-11-24 18:07:41,830 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 16:48:51] 2025-11-24 18:07:41,830 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 16:48:51] 2025-11-24 18:07:41,830 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 16:48:51] 2025-11-24 18:07:41,830 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 16:48:51] 2025-11-24 18:07:41,830 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 16:48:51] 2025-11-24 18:07:41,830 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 16:48:51] 2025-11-24 18:07:41,830 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 16:48:51] 2025-11-24 18:07:41,830 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 16:48:51] 2025-11-24 18:07:41,831 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 16:48:51] 2025-11-24 18:07:41,831 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 16:48:51] 2025-11-24 18:07:41,831 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 16:48:51] 2025-11-24 18:07:41,848 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 16:48:51] 2025-11-24 18:07:41,848 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 16:48:51] 2025-11-24 18:07:41,848 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 16:48:51] 2025-11-24 18:07:41,848 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 16:48:51] 2025-11-24 18:07:41,848 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 16:48:51] 2025-11-24 18:07:41,849 | INFO     | job 6895337376 has completed (purged errors)
[2025-11-24 16:48:51] 2025-11-24 18:07:41,849 | INFO     | overall cleanup function is called
[2025-11-24 16:48:51] 2025-11-24 18:07:42,971 | INFO     | --- collectZombieJob: --- 10, [4077780]
[2025-11-24 16:48:51] 2025-11-24 18:07:42,971 | INFO     | zombie collector waiting for pid 4077780
[2025-11-24 16:48:51] 2025-11-24 18:07:42,971 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 16:48:51] 2025-11-24 18:07:42,971 | INFO     | collected zombie processes
[2025-11-24 16:48:51] 2025-11-24 18:07:42,971 | INFO     | will attempt to kill all subprocesses of pid=4077780
[2025-11-24 16:48:51] 2025-11-24 18:07:43,315 | INFO     | process IDs to be killed: [4077780] (in reverse order)
[2025-11-24 16:48:51] 2025-11-24 18:07:43,423 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 16:48:51] 2025-11-24 18:07:43,423 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 16:48:51] 2025-11-24 18:07:43,490 | INFO     | did not find any defunct processes belonging to 4077780
[2025-11-24 16:48:51] 2025-11-24 18:07:43,504 | INFO     | did not find any defunct processes belonging to 4077780
[2025-11-24 16:48:51] 2025-11-24 18:07:43,552 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 16:48:51] 2025-11-24 18:07:43,552 | INFO     | ready for new job
[2025-11-24 16:48:51] 2025-11-24 18:07:43,553 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 16:48:51] 2025-11-24 18:07:43,609 | INFO     | ***************************************
[2025-11-24 16:48:51] 2025-11-24 18:07:43,609 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 16:48:51] 2025-11-24 18:07:43,609 | INFO     | ***************************************
[2025-11-24 16:48:51] 2025-11-24 18:07:43,609 | INFO     | 
[2025-11-24 16:48:51] 2025-11-24 18:07:43,619 | INFO     | architecture information:
[2025-11-24 16:48:51] 2025-11-24 18:07:43,624 | INFO     | executing command: cat /etc/os-release
[2025-11-24 16:48:51] 2025-11-24 18:07:43,676 | INFO     | cat /etc/os-release:
[2025-11-24 16:48:51] NAME="CentOS Linux"
[2025-11-24 16:48:51] VERSION="7 (Core)"
[2025-11-24 16:48:51] ID="centos"
[2025-11-24 16:48:51] ID_LIKE="rhel fedora"
[2025-11-24 16:48:51] VERSION_ID="7"
[2025-11-24 16:48:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 16:48:51] ANSI_COLOR="0;31"
[2025-11-24 16:48:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 16:48:51] HOME_URL="https://www.centos.org/"
[2025-11-24 16:48:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 16:48:51] 
[2025-11-24 16:48:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 16:48:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 16:48:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 16:48:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 16:48:51] 
[2025-11-24 16:48:51] 2025-11-24 18:07:43,677 | INFO     | ***************************************
[2025-11-24 16:48:51] 2025-11-24 18:07:44,181 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-24 16:48:51] 2025-11-24 18:07:44,209 | INFO     | sufficient remaining disk space (80325115904 B)
[2025-11-24 16:48:51] 2025-11-24 18:07:44,209 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 16:48:51] 2025-11-24 18:07:44,209 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 16:48:51] 2025-11-24 18:07:44,209 | INFO     | update_server=False
[2025-11-24 16:48:51] 2025-11-24 18:07:44,209 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 16:48:51] 2025-11-24 18:07:44,244 | INFO     | all payload control threads have been joined
[2025-11-24 16:48:51] 2025-11-24 18:07:44,391 | INFO     | all job control threads have been joined
[2025-11-24 16:48:51] 2025-11-24 18:07:44,698 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 16:48:51] 2025-11-24 18:07:44,698 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 16:48:51] 2025-11-24 18:07:44,698 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 16:48:51] 2025-11-24 18:07:44,699 | INFO     | will abort loop
[2025-11-24 16:48:51] 2025-11-24 18:07:44,829 | INFO     | all data control threads have been joined
[2025-11-24 16:48:51] 2025-11-24 18:07:45,215 | INFO     | [job] retrieve thread has finished
[2025-11-24 16:48:51] 2025-11-24 18:07:45,252 | INFO     | [payload] control thread has finished
[2025-11-24 16:48:51] 2025-11-24 18:07:45,295 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 16:48:51] 2025-11-24 18:07:45,397 | INFO     | [job] control thread has finished
[2025-11-24 16:48:51] 2025-11-24 18:07:45,412 [wrapper] supervise_pilot (15 min periods counter: 149)
[2025-11-24 16:48:51] 2025-11-24 18:07:45,504 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 16:48:51] 2025-11-24 18:07:45,705 | INFO     | [job] job monitor thread has finished
[2025-11-24 16:48:51] 2025-11-24 18:07:45,836 | INFO     | [data] control thread has finished
[2025-11-24 16:48:51] 2025-11-24 18:07:45,904 | INFO     | [data] copytool_in thread has finished
[2025-11-24 16:48:51] 2025-11-24 18:07:46,194 | INFO     | [payload] validate_post thread has finished
[2025-11-24 16:48:51] 2025-11-24 18:07:46,344 | INFO     | [monitor] cgroup control has ended
[2025-11-24 16:48:51] 2025-11-24 18:07:46,473 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 16:48:51] 2025-11-24 18:07:46,493 | INFO     | [payload] failed_post thread has finished
[2025-11-24 16:48:51] 2025-11-24 18:07:46,560 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 16:48:51] 2025-11-24 18:07:46,598 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 16:48:51] 2025-11-24 18:07:46,602 | INFO     | [job] validate thread has finished
[2025-11-24 16:48:51] 2025-11-24 18:07:46,662 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 16:48:51] 2025-11-24 18:07:46,742 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 16:48:51] 2025-11-24 18:07:47,302 | INFO     | [data] copytool_out thread has finished
[2025-11-24 16:48:51] 2025-11-24 18:07:47,748 | INFO     | [job] queue monitor thread has finished
[2025-11-24 16:48:51] 2025-11-24 18:07:50,614 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 16:48:51] 2025-11-24 18:07:52,660 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139632595457856)>', '<ExcThread(monitor, started 139632238900992)>']
[2025-11-24 16:48:51] 2025-11-24 18:07:57,685 | INFO     | all workflow threads have been joined
[2025-11-24 16:48:51] 2025-11-24 18:07:57,685 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 16:48:51] 2025-11-24 18:07:57,685 | INFO     | traces error code: 0
[2025-11-24 16:48:51] 2025-11-24 18:07:57,686 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 16:48:51] 2025-11-24 18:08:13,911 | INFO     | PID=4043573 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 16:48:51] 2025-11-24 18:08:13,911 | INFO     | .. there are 18 such processes running
[2025-11-24 16:48:51] 2025-11-24 18:08:13,911 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 16:48:51] 2025-11-24 18:08:13,912 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 16:48:51] 2025-11-24 18:08:13,912 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 16:48:51] 2025-11-24 18:08:13,912 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 16:48:51] 2025-11-24 18:08:13,912 | INFO     | [monitor] control thread has ended
[2025-11-24 16:48:51] 2025-11-24 18:08:14,093 [wrapper] ==== pilot stdout END ====
[2025-11-24 16:48:51] 2025-11-24 18:08:14,096 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 16:48:51] 2025-11-24 18:08:14,098 [wrapper] pilotpid: 4043573
[2025-11-24 16:48:51] 2025-11-24 18:08:14,100 [wrapper] Pilot exit status: 0
[2025-11-24 16:48:51] 2025-11-24 18:08:14,147 [wrapper] pandaids: 6895337376
[2025-11-24 16:48:51] 2025-11-24 18:08:14,225 [wrapper] cleanup supervisor_pilot 1195361 4043574
[2025-11-24 16:48:51] 2025-11-24 18:08:14,228 [wrapper] Test setup, not cleaning
[2025-11-24 16:48:51] 2025-11-24 18:08:14,231 [wrapper] apfmon messages muted
[2025-11-24 16:48:51] 2025-11-24 18:08:14,233 [wrapper] ==== wrapper stdout END ====
[2025-11-24 16:48:51] 2025-11-24 18:08:14,235 [wrapper] ==== wrapper stderr END ====
[2025-11-24 16:48:51]  *** Error codes and diagnostics ***
[2025-11-24 16:48:51]     "exeErrorCode": 0,
[2025-11-24 16:48:51]     "exeErrorDiag": "",
[2025-11-24 16:48:51]     "pilotErrorCode": 0,
[2025-11-24 16:48:51]     "pilotErrorDiag": "",
[2025-11-24 16:48:51]  *** Listing of results directory ***
[2025-11-24 16:48:51] total 1336752
[2025-11-24 16:48:51] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 02:15 pilot3.tar.gz
[2025-11-24 16:48:51] -rwx------. 1 boincer umatlas     36292 Nov 22 02:44 runpilot2-wrapper.sh
[2025-11-24 16:48:51] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 02:44 queuedata.json
[2025-11-24 16:48:51] -rw-r--r--. 1 boincer umatlas       100 Nov 23 00:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 16:48:51] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 00:06 run_atlas
[2025-11-24 16:48:51] -rw-r--r--. 1 boincer umatlas       105 Nov 23 00:06 job.xml
[2025-11-24 16:48:51] -rw-r--r--. 2 boincer umatlas 409858027 Nov 23 00:06 EVNT.47483658._000302.pool.root.1
[2025-11-24 16:48:51] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:06 start_atlas.sh
[2025-11-24 16:48:51] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 00:06 shared
[2025-11-24 16:48:51] -rw-r--r--. 2 boincer umatlas    590098 Nov 23 00:06 input.tar.gz
[2025-11-24 16:48:51] -rw-r--r--. 1 boincer umatlas         0 Nov 23 00:06 boinc_lockfile
[2025-11-24 16:48:51] -rw-r--r--. 1 boincer umatlas      2784 Nov 23 00:06 pandaJob.out
[2025-11-24 16:48:51] -rw-------. 1 boincer umatlas        57 Nov 23 00:06 setup.sh.local
[2025-11-24 16:48:51] -rw-------. 1 boincer umatlas    989784 Nov 23 00:07 agis_schedconf.cvmfs.json
[2025-11-24 16:48:51] drwx------. 5 boincer umatlas      4096 Nov 23 00:07 pilot3
[2025-11-24 16:48:51] -rw-r--r--. 1 boincer umatlas       532 Nov 24 12:57 boinc_task_state.xml
[2025-11-24 16:48:51] -rw-------. 1 boincer umatlas 915916302 Nov 24 13:06 HITS.47556137._002988.pool.root.1
[2025-11-24 16:48:51] -rw-------. 1 boincer umatlas        95 Nov 24 13:07 pilot_heartbeat.json
[2025-11-24 16:48:51] -rw-------. 1 boincer umatlas      1085 Nov 24 13:07 memory_monitor_summary.json
[2025-11-24 16:48:51] -rw-------. 1 boincer umatlas   1516227 Nov 24 13:07 agis_ddmendpoints.agis.ALL.json
[2025-11-24 16:48:51] -rw-------. 1 boincer umatlas   2982494 Nov 24 13:07 log.47556137._002988.job.log.tgz.1
[2025-11-24 16:48:51] -rw-------. 1 boincer umatlas      8645 Nov 24 13:07 heartbeat.json
[2025-11-24 16:48:51] -rw-------. 1 boincer umatlas       823 Nov 24 13:08 pilotlog.txt
[2025-11-24 16:48:51] -rw-------. 1 boincer umatlas  16591220 Nov 24 13:08 log.47556137._002988.job.log.1
[2025-11-24 16:48:51] -rw-------. 1 boincer umatlas       353 Nov 24 13:08 output.list
[2025-11-24 16:48:51] -rw-r--r--. 1 boincer umatlas       620 Nov 24 13:08 runtime_log
[2025-11-24 16:48:51] -rw-------. 1 boincer umatlas  19589120 Nov 24 13:08 result.tar.gz
[2025-11-24 16:48:51] -rw-r--r--. 1 boincer umatlas      9344 Nov 24 13:08 runtime_log.err
[2025-11-24 16:48:51] -rw-------. 1 boincer umatlas       669 Nov 24 13:08 OEmNDmVTxg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmG2JKDmIQhbRm.diag
[2025-11-24 16:48:51] -rw-r--r--. 1 boincer umatlas      6903 Nov 24 16:48 init_data.xml
[2025-11-24 16:48:51] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 16:48 boinc_mmap_file
[2025-11-24 16:48:51] -rw-r--r--. 1 boincer umatlas        28 Nov 24 16:48 wrapper_checkpoint.txt
[2025-11-24 16:48:51] -rw-r--r--. 1 boincer umatlas     21322 Nov 24 16:48 stderr.txt
[2025-11-24 16:48:51] HITS file was successfully produced:
[2025-11-24 16:48:51] -rw-------. 1 boincer umatlas 915916302 Nov 24 13:06 shared/HITS.pool.root.1
[2025-11-24 16:48:51]  *** Contents of shared directory: ***
[2025-11-24 16:48:51] total 1314440
[2025-11-24 16:48:51] -rw-r--r--. 2 boincer umatlas 409858027 Nov 23 00:06 ATLAS.root_0
[2025-11-24 16:48:51] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:06 start_atlas.sh
[2025-11-24 16:48:51] -rw-r--r--. 2 boincer umatlas    590098 Nov 23 00:06 input.tar.gz
[2025-11-24 16:48:51] -rw-------. 1 boincer umatlas 915916302 Nov 24 13:06 HITS.pool.root.1
[2025-11-24 16:48:51] -rw-------. 1 boincer umatlas  19589120 Nov 24 13:08 result.tar.gz
16:48:53 (4028806): run_atlas exited; CPU time 203387.840038
16:48:53 (4028806): called boinc_finish(0)

</stderr_txt>
]]>

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