Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:48:30 (2692761): wrapper (7.7.26015): starting
22:48:30 (2692761): wrapper: running run_atlas (--nthreads 9)
[2025-11-23 22:48:30] Arguments: --nthreads 9
[2025-11-23 22:48:30] Threads: 9
[2025-11-23 22:48:30] Checking for CVMFS
[2025-11-23 22:48:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 22:48:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 22:48:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 22:48:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 22:48:32] 2.13.3.0 9158 26605 311352 153231 3 212 22204944 32935937 25970 16776704 0 159288898 99.796 86333936 33940 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 22:48:32] CVMFS is ok
[2025-11-23 22:48:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 22:48:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 22:48:32] Further information can be found at the LHC@home message board.
[2025-11-23 22:48:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 22:48:32] Checking for apptainer binary...
[2025-11-23 22:48:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 22:48:32] Running /usr/bin/apptainer --version
[2025-11-23 22:48:32] apptainer version 1.4.4-1.el9
[2025-11-23 22:48:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 22:48:32] c-8-16.aglt2.org
[2025-11-23 22:48:32] apptainer works
[2025-11-23 22:48:32] Set ATHENA_PROC_NUMBER=9
[2025-11-23 22:48:32] Set ATHENA_CORE_NUMBER=9
[2025-11-23 22:48:32] Starting ATLAS job with PandaID=6893860383
[2025-11-23 22:48:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
01:20:10 (2692761): BOINC client no longer exists - exiting
01:20:10 (2692761): timer handler: client dead, exiting
01:58:10 (3263679): wrapper (7.7.26015): starting
01:58:10 (3263679): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 01:58:10] Arguments: --nthreads 8
[2025-11-24 01:58:10] Threads: 8
[2025-11-24 01:58:10] This job has been restarted, cleaning up previous attempt
[2025-11-24 01:58:10] Checking for CVMFS
[2025-11-24 01:58:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 01:58:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 01:58:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 01:58:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 01:58:13] 2.13.3.0 9158 26795 316084 153236 2 333 26084080 32935936 25684 16776704 0 160078445 99.794 87333546 33848 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 01:58:13] CVMFS is ok
[2025-11-24 01:58:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 01:58:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 01:58:13] Further information can be found at the LHC@home message board.
[2025-11-24 01:58:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 01:58:13] Checking for apptainer binary...
[2025-11-24 01:58:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 01:58:13] Running /usr/bin/apptainer --version
[2025-11-24 01:58:13] apptainer version 1.4.4-1.el9
[2025-11-24 01:58:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 01:58:14] c-8-16.aglt2.org
[2025-11-24 01:58:14] apptainer works
[2025-11-24 01:58:14] Set ATHENA_PROC_NUMBER=8
[2025-11-24 01:58:14] Set ATHENA_CORE_NUMBER=8
[2025-11-24 01:58:14] Starting ATLAS job with PandaID=6893860383
[2025-11-24 01:58:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:00:13 (3263679): BOINC client no longer exists - exiting
13:00:13 (3263679): timer handler: client dead, exiting
13:12:25 (998749): wrapper (7.7.26015): starting
13:12:25 (998749): wrapper: running run_atlas (--nthreads 10)
[2025-11-24 13:12:25] Arguments: --nthreads 10
[2025-11-24 13:12:25] Threads: 10
[2025-11-24 13:12:25] This job has been restarted, cleaning up previous attempt
[2025-11-24 13:12:25] Checking for CVMFS
[2025-11-24 13:12:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 13:12:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 13:12:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 13:12:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 13:12:26] 2.13.3.0 9158 27469 321428 153254 1 442 18088534 32935936 23670 16776704 0 162191084 99.791 89471353 33947 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 13:12:26] CVMFS is ok
[2025-11-24 13:12:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 13:12:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 13:12:26] Further information can be found at the LHC@home message board.
[2025-11-24 13:12:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 13:12:26] Checking for apptainer binary...
[2025-11-24 13:12:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 13:12:26] Running /usr/bin/apptainer --version
[2025-11-24 13:12:26] apptainer version 1.4.4-1.el9
[2025-11-24 13:12:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 13:12:26] c-8-16.aglt2.org
[2025-11-24 13:12:26] apptainer works
[2025-11-24 13:12:26] Set ATHENA_PROC_NUMBER=10
[2025-11-24 13:12:26] Set ATHENA_CORE_NUMBER=10
[2025-11-24 13:12:26] Starting ATLAS job with PandaID=6893860383
[2025-11-24 13:12:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 12:42:11]  *** The last 200 lines of the pilot log: ***
[2025-11-25 12:42:11] 2025-11-25 17:41:21,684 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.141425
[2025-11-25 12:42:11] 2025-11-25 17:41:21,704 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893860383/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 12:42:11] 2025-11-25 17:41:21,705 | INFO     | extracted standard info from prmon json
[2025-11-25 12:42:11] 2025-11-25 17:41:21,705 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 12:42:11] 2025-11-25 17:41:21,706 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 12:42:11] 2025-11-25 17:41:21,732 | INFO     | fitting pss+swap vs Time
[2025-11-25 12:42:11] 2025-11-25 17:41:21,734 | INFO     | sum of square deviations: 823806108035.4336
[2025-11-25 12:42:11] 2025-11-25 17:41:21,747 | INFO     | time since job start (84525s) is within the limit (172800.0s)
[2025-11-25 12:42:11] 2025-11-25 17:41:21,747 | INFO     | 84527s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-25 12:42:11] 2025-11-25 17:41:21,797 | INFO     | sum of deviations: 4272134847911.791
[2025-11-25 12:42:11] 2025-11-25 17:41:21,797 | INFO     | mean x: 1764050195.0202167
[2025-11-25 12:42:11] 2025-11-25 17:41:21,797 | INFO     | mean y: 3263918.971841155
[2025-11-25 12:42:11] 2025-11-25 17:41:21,797 | INFO     | intersect: -9144835661.867039
[2025-11-25 12:42:11] 2025-11-25 17:41:21,799 | INFO     | chi2: 9.90580308154802
[2025-11-25 12:42:11] 2025-11-25 17:41:21,801 | INFO     | sum of square deviations: 814916567660.211
[2025-11-25 12:42:11] 2025-11-25 17:41:21,897 | INFO     | sum of deviations: 4796017047343.399
[2025-11-25 12:42:11] 2025-11-25 17:41:21,897 | INFO     | mean x: 1764050042.5239131
[2025-11-25 12:42:11] 2025-11-25 17:41:21,898 | INFO     | mean y: 3272907.230434783
[2025-11-25 12:42:11] 2025-11-25 17:41:21,898 | INFO     | intersect: -10378666069.176786
[2025-11-25 12:42:11] 2025-11-25 17:41:21,899 | INFO     | chi2: 6.740916604089052
[2025-11-25 12:42:11] 2025-11-25 17:41:21,900 | INFO     | current chi2=6.740916604089052 (change=31.949822254738162 %)
[2025-11-25 12:42:11] 2025-11-25 17:41:21,901 | INFO     | sum of square deviations: 806091214534.9491
[2025-11-25 12:42:11] 2025-11-25 17:41:21,947 | INFO     | sum of deviations: 5176669937384.226
[2025-11-25 12:42:11] 2025-11-25 17:41:21,947 | INFO     | mean x: 1764049890.0276363
[2025-11-25 12:42:11] 2025-11-25 17:41:21,947 | INFO     | mean y: 3279481.6254545455
[2025-11-25 12:42:11] 2025-11-25 17:41:21,947 | INFO     | intersect: -11325344213.920465
[2025-11-25 12:42:11] 2025-11-25 17:41:21,949 | INFO     | chi2: 4.833951871664608
[2025-11-25 12:42:11] 2025-11-25 17:41:21,949 | INFO     | current chi2=4.833951871664608 (change=28.289398080784384 %)
[2025-11-25 12:42:11] 2025-11-25 17:41:21,951 | INFO     | sum of square deviations: 797329816097.1509
[2025-11-25 12:42:11] 2025-11-25 17:41:21,995 | INFO     | sum of deviations: 5471814968742.372
[2025-11-25 12:42:11] 2025-11-25 17:41:21,996 | INFO     | mean x: 1764049737.5313869
[2025-11-25 12:42:11] 2025-11-25 17:41:21,996 | INFO     | mean y: 3284618.1656934307
[2025-11-25 12:42:11] 2025-11-25 17:41:21,996 | INFO     | intersect: -12102814469.760773
[2025-11-25 12:42:11] 2025-11-25 17:41:21,997 | INFO     | chi2: 3.6810313877573675
[2025-11-25 12:42:11] 2025-11-25 17:41:21,998 | INFO     | current chi2=3.6810313877573675 (change=23.85047502573135 %)
[2025-11-25 12:42:11] 2025-11-25 17:41:21,998 | INFO     | right removable region: 1369
[2025-11-25 12:42:11] 2025-11-25 17:41:21,999 | INFO     | sum of square deviations: 814915874336.3042
[2025-11-25 12:42:11] 2025-11-25 17:41:22,046 | INFO     | sum of deviations: 3878631049719.2905
[2025-11-25 12:42:11] 2025-11-25 17:41:22,046 | INFO     | mean x: 1764050347.5224638
[2025-11-25 12:42:11] 2025-11-25 17:41:22,046 | INFO     | mean y: 3270662.1036231886
[2025-11-25 12:42:11] 2025-11-25 17:41:22,046 | INFO     | intersect: -8392811273.030084
[2025-11-25 12:42:11] 2025-11-25 17:41:22,048 | INFO     | chi2: 7.986402666528811
[2025-11-25 12:42:11] 2025-11-25 17:41:22,048 | INFO     | current chi2=7.986402666528811 (change=19.376525045148153 %)
[2025-11-25 12:42:11] 2025-11-25 17:41:22,049 | INFO     | left removable region: 10
[2025-11-25 12:42:11] 2025-11-25 17:41:22,050 | INFO     | sum of square deviations: 778277324392.305
[2025-11-25 12:42:11] 2025-11-25 17:41:22,211 | INFO     | sum of deviations: 4968664859344.118
[2025-11-25 12:42:11] 2025-11-25 17:41:22,211 | INFO     | mean x: 1764050012.03532
[2025-11-25 12:42:11] 2025-11-25 17:41:22,211 | INFO     | mean y: 3295421.3936718176
[2025-11-25 12:42:11] 2025-11-25 17:41:22,211 | INFO     | intersect: -11258722666.785032
[2025-11-25 12:42:11] 2025-11-25 17:41:22,213 | INFO     | chi2: 1.384392643123862
[2025-11-25 12:42:11] 2025-11-25 17:41:22,213 | INFO     | current memory leak: 6.38 B/s (using 1359 data points, chi2=1.38)
[2025-11-25 12:42:11] 2025-11-25 17:41:22,215 | INFO     | could have reported an average CPU frequency of 2600 MHz (50 samples)
[2025-11-25 12:42:11] 2025-11-25 17:41:22,215 | INFO     | ..............................
[2025-11-25 12:42:11] 2025-11-25 17:41:22,216 | INFO     | . Timing measurements:
[2025-11-25 12:42:11] 2025-11-25 17:41:22,217 | INFO     | . get job = 0 s
[2025-11-25 12:42:11] 2025-11-25 17:41:22,217 | INFO     | . initial setup = 2 s
[2025-11-25 12:42:11] 2025-11-25 17:41:22,217 | INFO     | . payload setup = 5 s
[2025-11-25 12:42:11] 2025-11-25 17:41:22,217 | INFO     | . stage-in = 0 s
[2025-11-25 12:42:11] 2025-11-25 17:41:22,217 | INFO     | . payload execution = 84484 s
[2025-11-25 12:42:11] 2025-11-25 17:41:22,217 | INFO     | . stage-out = 4 s
[2025-11-25 12:42:11] 2025-11-25 17:41:22,217 | INFO     | . log creation = 1 s
[2025-11-25 12:42:11] 2025-11-25 17:41:22,217 | INFO     | ..............................
[2025-11-25 12:42:11] 2025-11-25 17:41:22,215 | INFO     | monitor loop #5671: job 0:6893860383 is in state 'finished'
[2025-11-25 12:42:11] 2025-11-25 17:41:22,225 | WARNING  | exception caught: deque index out of range
[2025-11-25 12:42:11] 2025-11-25 17:41:22,333 | INFO     | 
[2025-11-25 12:42:11] 2025-11-25 17:41:22,333 | INFO     | job summary report
[2025-11-25 12:42:11] 2025-11-25 17:41:22,333 | INFO     | --------------------------------------------------
[2025-11-25 12:42:11] 2025-11-25 17:41:22,333 | INFO     | PanDA job id: 6893860383
[2025-11-25 12:42:11] 2025-11-25 17:41:22,333 | INFO     | task id: 47523449
[2025-11-25 12:42:11] 2025-11-25 17:41:22,334 | INFO     | errors: (none)
[2025-11-25 12:42:11] 2025-11-25 17:41:22,334 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 12:42:11] 2025-11-25 17:41:22,334 | INFO     | pilot state: finished 
[2025-11-25 12:42:11] 2025-11-25 17:41:22,334 | INFO     | transexitcode: 0
[2025-11-25 12:42:11] 2025-11-25 17:41:22,334 | INFO     | exeerrorcode: 0
[2025-11-25 12:42:11] 2025-11-25 17:41:22,334 | INFO     | exeerrordiag: 
[2025-11-25 12:42:11] 2025-11-25 17:41:22,334 | INFO     | exitcode: 0
[2025-11-25 12:42:11] 2025-11-25 17:41:22,334 | INFO     | exitmsg: OK
[2025-11-25 12:42:11] 2025-11-25 17:41:22,334 | INFO     | cpuconsumptiontime: 315891 s
[2025-11-25 12:42:11] 2025-11-25 17:41:22,334 | INFO     | nevents: 1000
[2025-11-25 12:42:11] 2025-11-25 17:41:22,334 | INFO     | neventsw: 0
[2025-11-25 12:42:11] 2025-11-25 17:41:22,335 | INFO     | pid: 1034507
[2025-11-25 12:42:11] 2025-11-25 17:41:22,335 | INFO     | pgrp: 1034507
[2025-11-25 12:42:11] 2025-11-25 17:41:22,335 | INFO     | corecount: 10
[2025-11-25 12:42:11] 2025-11-25 17:41:22,335 | INFO     | event service: False
[2025-11-25 12:42:11] 2025-11-25 17:41:22,335 | INFO     | sizes: {0: 2283481, 1: 2284337, 4: 2284599, 12: 2284627, 84491: 2350613, 84496: 2359612, 84497: 2359796, 84511: 2360042}
[2025-11-25 12:42:11] 2025-11-25 17:41:22,335 | INFO     | --------------------------------------------------
[2025-11-25 12:42:11] 2025-11-25 17:41:22,335 | INFO     | 
[2025-11-25 12:42:11] 2025-11-25 17:41:22,335 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 12:42:11] 2025-11-25 17:41:22,430 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 12:42:11] 2025-11-25 17:41:22,430 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 12:42:11] 2025-11-25 17:41:22,430 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 12:42:11] 2025-11-25 17:41:22,430 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 12:42:11] 2025-11-25 17:41:22,430 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 12:42:11] 2025-11-25 17:41:22,431 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 12:42:11] 2025-11-25 17:41:22,431 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 12:42:11] 2025-11-25 17:41:22,431 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 12:42:11] 2025-11-25 17:41:22,431 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 12:42:11] 2025-11-25 17:41:22,431 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 12:42:11] 2025-11-25 17:41:22,431 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 12:42:11] 2025-11-25 17:41:22,431 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 12:42:11] 2025-11-25 17:41:22,431 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 12:42:11] 2025-11-25 17:41:22,431 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 12:42:11] 2025-11-25 17:41:22,432 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 12:42:11] 2025-11-25 17:41:22,432 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 12:42:11] 2025-11-25 17:41:22,432 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 12:42:11] 2025-11-25 17:41:22,432 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 12:42:11] 2025-11-25 17:41:22,432 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 12:42:11] 2025-11-25 17:41:22,432 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 12:42:11] 2025-11-25 17:41:22,432 | INFO     | job 6893860383 has completed (purged errors)
[2025-11-25 12:42:11] 2025-11-25 17:41:22,432 | INFO     | overall cleanup function is called
[2025-11-25 12:42:11] 2025-11-25 17:41:23,464 | INFO     | --- collectZombieJob: --- 10, [1034507]
[2025-11-25 12:42:11] 2025-11-25 17:41:23,465 | INFO     | zombie collector waiting for pid 1034507
[2025-11-25 12:42:11] 2025-11-25 17:41:23,465 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 12:42:11] 2025-11-25 17:41:23,465 | INFO     | collected zombie processes
[2025-11-25 12:42:11] 2025-11-25 17:41:23,465 | INFO     | will attempt to kill all subprocesses of pid=1034507
[2025-11-25 12:42:11] 2025-11-25 17:41:24,259 | INFO     | process IDs to be killed: [1034507] (in reverse order)
[2025-11-25 12:42:11] 2025-11-25 17:41:24,418 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 12:42:11] 2025-11-25 17:41:24,419 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 12:42:11] 2025-11-25 17:41:24,440 | INFO     | did not find any defunct processes belonging to 1034507
[2025-11-25 12:42:11] 2025-11-25 17:41:24,456 | INFO     | did not find any defunct processes belonging to 1034507
[2025-11-25 12:42:11] 2025-11-25 17:41:24,457 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 12:42:11] 2025-11-25 17:41:24,458 | INFO     | ready for new job
[2025-11-25 12:42:11] 2025-11-25 17:41:24,458 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 12:42:11] 2025-11-25 17:41:24,462 | INFO     | ***************************************
[2025-11-25 12:42:11] 2025-11-25 17:41:24,463 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 12:42:11] 2025-11-25 17:41:24,463 | INFO     | ***************************************
[2025-11-25 12:42:11] 2025-11-25 17:41:24,463 | INFO     | 
[2025-11-25 12:42:11] 2025-11-25 17:41:24,465 | INFO     | architecture information:
[2025-11-25 12:42:11] 2025-11-25 17:41:24,465 | INFO     | executing command: cat /etc/os-release
[2025-11-25 12:42:11] 2025-11-25 17:41:24,483 | INFO     | cat /etc/os-release:
[2025-11-25 12:42:11] NAME="CentOS Linux"
[2025-11-25 12:42:11] VERSION="7 (Core)"
[2025-11-25 12:42:11] ID="centos"
[2025-11-25 12:42:11] ID_LIKE="rhel fedora"
[2025-11-25 12:42:11] VERSION_ID="7"
[2025-11-25 12:42:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 12:42:11] ANSI_COLOR="0;31"
[2025-11-25 12:42:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 12:42:11] HOME_URL="https://www.centos.org/"
[2025-11-25 12:42:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 12:42:11] 
[2025-11-25 12:42:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 12:42:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 12:42:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 12:42:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 12:42:11] 
[2025-11-25 12:42:11] 2025-11-25 17:41:24,483 | INFO     | ***************************************
[2025-11-25 12:42:11] 2025-11-25 17:41:24,987 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 12:42:11] 2025-11-25 17:41:25,208 | INFO     | sufficient remaining disk space (71750909952 B)
[2025-11-25 12:42:11] 2025-11-25 17:41:25,209 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 12:42:11] 2025-11-25 17:41:25,209 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 12:42:11] 2025-11-25 17:41:25,209 | INFO     | update_server=False
[2025-11-25 12:42:11] 2025-11-25 17:41:25,209 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 12:42:11] 2025-11-25 17:41:25,210 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 12:42:11] 2025-11-25 17:41:25,655 | INFO     | all data control threads have been joined
[2025-11-25 12:42:11] 2025-11-25 17:41:25,749 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:42:11] 2025-11-25 17:41:25,749 | INFO     | aborting loop
[2025-11-25 12:42:11] 2025-11-25 17:41:26,216 | INFO     | [job] retrieve thread has finished
[2025-11-25 12:42:11] 2025-11-25 17:41:26,290 | INFO     | all payload control threads have been joined
[2025-11-25 12:42:11] 2025-11-25 17:41:26,322 | INFO     | [data] copytool_in thread has finished
[2025-11-25 12:42:11] 2025-11-25 17:41:26,463 | INFO     | [job] validate thread has finished
[2025-11-25 12:42:11] 2025-11-25 17:41:26,685 | INFO     | [data] control thread has finished
[2025-11-25 12:42:11] 2025-11-25 17:41:26,730 | INFO     | all job control threads have been joined
[2025-11-25 12:42:11] 2025-11-25 17:41:26,763 | INFO     | [job] job monitor thread has finished
[2025-11-25 12:42:11] 2025-11-25 17:41:26,936 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 12:42:11] 2025-11-25 17:41:27,102 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 12:42:11] 2025-11-25 17:41:27,216 | INFO     | [data] copytool_out thread has finished
[2025-11-25 12:42:11] 2025-11-25 17:41:27,301 | INFO     | [payload] control thread has finished
[2025-11-25 12:42:11] 2025-11-25 17:41:27,375 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:42:11] 2025-11-25 17:41:27,432 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 12:42:11] 2025-11-25 17:41:27,513 | INFO     | [payload] validate_post thread has finished
[2025-11-25 12:42:11] 2025-11-25 17:41:27,644 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 12:42:11] 2025-11-25 17:41:27,737 | INFO     | [job] control thread has finished
[2025-11-25 12:42:11] 2025-11-25 17:41:27,788 | INFO     | [payload] failed_post thread has finished
[2025-11-25 12:42:11] 2025-11-25 17:41:28,332 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 12:42:11] 2025-11-25 17:41:28,382 | INFO     | [job] queue monitor thread has finished
[2025-11-25 12:42:11] 2025-11-25 17:41:32,347 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 12:42:11] 2025-11-25 17:41:55,500 | INFO     | PID=1010619 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 12:42:11] 2025-11-25 17:41:55,500 | INFO     | .. there are 43 such processes running
[2025-11-25 12:42:11] 2025-11-25 17:41:55,501 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 12:42:11] 2025-11-25 17:41:55,501 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 12:42:11] 2025-11-25 17:41:55,501 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 12:42:11] 2025-11-25 17:42:04,143 | INFO     | [monitor] cgroup control has ended
[2025-11-25 12:42:11] 2025-11-25 17:42:06,101 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139773657397056)>', '<ExcThread(monitor, started 139773150729984)>']
[2025-11-25 12:42:11] 2025-11-25 17:42:06,575 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 12:42:11] 2025-11-25 17:42:06,576 | INFO     | [monitor] control thread has ended
[2025-11-25 12:42:11] 2025-11-25 17:42:11,127 | INFO     | all workflow threads have been joined
[2025-11-25 12:42:11] 2025-11-25 17:42:11,128 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 12:42:11] 2025-11-25 17:42:11,128 | INFO     | traces error code: 0
[2025-11-25 12:42:11] 2025-11-25 17:42:11,128 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 12:42:11] 2025-11-25 17:42:11,343 [wrapper] ==== pilot stdout END ====
[2025-11-25 12:42:11] 2025-11-25 17:42:11,346 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 12:42:11] 2025-11-25 17:42:11,350 [wrapper] pilotpid: 1010619
[2025-11-25 12:42:11] 2025-11-25 17:42:11,353 [wrapper] Pilot exit status: 0
[2025-11-25 12:42:11] 2025-11-25 17:42:11,368 [wrapper] pandaids: 6893860383 6893860383 6893860383
[2025-11-25 12:42:11] 2025-11-25 17:42:11,455 [wrapper] cleanup supervisor_pilot 1122006 1010620
[2025-11-25 12:42:11] 2025-11-25 17:42:11,458 [wrapper] Test setup, not cleaning
[2025-11-25 12:42:11] 2025-11-25 17:42:11,464 [wrapper] apfmon messages muted
[2025-11-25 12:42:11] 2025-11-25 17:42:11,467 [wrapper] ==== wrapper stdout END ====
[2025-11-25 12:42:11] 2025-11-25 17:42:11,470 [wrapper] ==== wrapper stderr END ====
[2025-11-25 12:42:11]  *** Error codes and diagnostics ***
[2025-11-25 12:42:11]     "exeErrorCode": 0,
[2025-11-25 12:42:11]     "exeErrorDiag": "",
[2025-11-25 12:42:11]     "pilotErrorCode": 0,
[2025-11-25 12:42:11]     "pilotErrorDiag": "",
[2025-11-25 12:42:11]  *** Listing of results directory ***
[2025-11-25 12:42:11] total 1751832
[2025-11-25 12:42:11] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-25 12:42:11] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 08:12 pilot3.tar.gz
[2025-11-25 12:42:11] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 08:47 queuedata.json
[2025-11-25 12:42:11] -rwx------. 1 boincer umatlas     36292 Nov 20 08:47 runpilot2-wrapper.sh
[2025-11-25 12:42:11] -rw-r--r--. 1 boincer umatlas       100 Nov 23 22:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 12:42:11] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 22:48 run_atlas
[2025-11-25 12:42:11] -rw-r--r--. 1 boincer umatlas       105 Nov 23 22:48 job.xml
[2025-11-25 12:42:11] -rw-r--r--. 3 boincer umatlas 411188520 Nov 23 22:48 EVNT.47493127._000558.pool.root.1
[2025-11-25 12:42:11] -rw-r--r--. 3 boincer umatlas 411188520 Nov 23 22:48 ATLAS.root_0
[2025-11-25 12:42:11] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 22:48 start_atlas.sh
[2025-11-25 12:42:11] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 22:48 shared
[2025-11-25 12:42:11] -rw-r--r--. 2 boincer umatlas    590099 Nov 23 22:48 input.tar.gz
[2025-11-25 12:42:11] -rw-r--r--. 1 boincer umatlas         0 Nov 23 22:48 boinc_lockfile
[2025-11-25 12:42:11] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 13:12 pandaJob.out
[2025-11-25 12:42:11] -rw-------. 1 boincer umatlas        57 Nov 24 13:12 setup.sh.local
[2025-11-25 12:42:11] -rw-------. 1 boincer umatlas    991801 Nov 24 13:12 agis_schedconf.cvmfs.json
[2025-11-25 12:42:11] -rw-r--r--. 1 boincer umatlas       534 Nov 25 12:15 boinc_task_state.xml
[2025-11-25 12:42:11] -rw-r--r--. 1 boincer umatlas      6660 Nov 25 12:37 init_data.xml
[2025-11-25 12:42:11] -rw-------. 1 boincer umatlas 939218741 Nov 25 12:40 HITS.47523449._005577.pool.root.1
[2025-11-25 12:42:11] -rw-------. 1 boincer umatlas        97 Nov 25 12:40 pilot_heartbeat.json
[2025-11-25 12:42:11] -rw-------. 1 boincer umatlas      1077 Nov 25 12:41 memory_monitor_summary.json
[2025-11-25 12:42:11] -rw-------. 1 boincer umatlas   1516240 Nov 25 12:41 agis_ddmendpoints.agis.ALL.json
[2025-11-25 12:42:11] -rw-------. 1 boincer umatlas   2705393 Nov 25 12:41 log.47523449._005577.job.log.tgz.1
[2025-11-25 12:42:11] -rw-------. 1 boincer umatlas      8675 Nov 25 12:41 heartbeat.json
[2025-11-25 12:42:11] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 12:42 boinc_mmap_file
[2025-11-25 12:42:11] -rw-r--r--. 1 boincer umatlas        30 Nov 25 12:42 wrapper_checkpoint.txt
[2025-11-25 12:42:11] -rw-------. 1 boincer umatlas      4824 Nov 25 12:42 pilotlog.txt
[2025-11-25 12:42:11] -rw-------. 1 boincer umatlas  11471456 Nov 25 12:42 log.47523449._005577.job.log.1
[2025-11-25 12:42:11] -rw-------. 1 boincer umatlas       353 Nov 25 12:42 output.list
[2025-11-25 12:42:11] -rw-r--r--. 1 boincer umatlas       620 Nov 25 12:42 runtime_log
[2025-11-25 12:42:11] -rw-------. 1 boincer umatlas  14192640 Nov 25 12:42 result.tar.gz
[2025-11-25 12:42:11] -rw-r--r--. 1 boincer umatlas      9420 Nov 25 12:42 runtime_log.err
[2025-11-25 12:42:11] -rw-------. 1 boincer umatlas       913 Nov 25 12:42 3KAODmVBKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmizHKDmYOArcn.diag
[2025-11-25 12:42:11] -rw-r--r--. 1 boincer umatlas     25895 Nov 25 12:42 stderr.txt
[2025-11-25 12:42:11] HITS file was successfully produced:
[2025-11-25 12:42:11] -rw-------. 1 boincer umatlas 939218741 Nov 25 12:40 shared/HITS.pool.root.1
[2025-11-25 12:42:11]  *** Contents of shared directory: ***
[2025-11-25 12:42:11] total 1333224
[2025-11-25 12:42:11] -rw-r--r--. 3 boincer umatlas 411188520 Nov 23 22:48 ATLAS.root_0
[2025-11-25 12:42:11] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 22:48 start_atlas.sh
[2025-11-25 12:42:11] -rw-r--r--. 2 boincer umatlas    590099 Nov 23 22:48 input.tar.gz
[2025-11-25 12:42:11] -rw-------. 1 boincer umatlas 939218741 Nov 25 12:40 HITS.pool.root.1
[2025-11-25 12:42:11] -rw-------. 1 boincer umatlas  14192640 Nov 25 12:42 result.tar.gz
12:42:13 (998749): run_atlas exited; CPU time 318385.689401
12:42:13 (998749): called boinc_finish(0)

</stderr_txt>
]]>

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