Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:10:42 (3686315): wrapper (7.7.26015): starting
00:10:42 (3686315): wrapper: running run_atlas (--nthreads 9)
[2025-11-23 00:10:42] Arguments: --nthreads 9
[2025-11-23 00:10:42] Threads: 9
[2025-11-23 00:10:42] Checking for CVMFS
[2025-11-23 00:10:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:10:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:10:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:10:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:10:43] 2.13.3.0 11338 25158 236764 153197 2 340 30089104 32935937 35461 16776704 0 114984289 99.529 131379231 38796 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 00:10:43] CVMFS is ok
[2025-11-23 00:10:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:10:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 00:10:43] Further information can be found at the LHC@home message board.
[2025-11-23 00:10:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:10:43] Checking for apptainer binary...
[2025-11-23 00:10:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:10:43] Running /usr/bin/apptainer --version
[2025-11-23 00:10:43] apptainer version 1.4.4-1.el9
[2025-11-23 00:10:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:10:44] c7-3-17.aglt2.org
[2025-11-23 00:10:44] apptainer works
[2025-11-23 00:10:44] Set ATHENA_PROC_NUMBER=9
[2025-11-23 00:10:44] Set ATHENA_CORE_NUMBER=9
[2025-11-23 00:10:44] Starting ATLAS job with PandaID=6893876883
[2025-11-23 00:10:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:40:03 (3686315): BOINC client no longer exists - exiting
13:40:03 (3686315): timer handler: client dead, exiting
13:40:44 (2790620): wrapper (7.7.26015): starting
13:40:44 (2790620): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 13:40:44] Arguments: --nthreads 8
[2025-11-23 13:40:44] Threads: 8
[2025-11-23 13:40:44] This job has been restarted, cleaning up previous attempt
[2025-11-23 13:40:44] Checking for CVMFS
[2025-11-23 13:40:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 13:40:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 13:40:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 13:40:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 13:40:45] 2.13.3.0 11338 25968 229800 153217 1 263 29311010 32935937 30128 16776704 0 119466214 99.532 136602041 38825 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 13:40:45] CVMFS is ok
[2025-11-23 13:40:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 13:40:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 13:40:45] Further information can be found at the LHC@home message board.
[2025-11-23 13:40:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 13:40:45] Checking for apptainer binary...
[2025-11-23 13:40:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 13:40:45] Running /usr/bin/apptainer --version
[2025-11-23 13:40:45] apptainer version 1.4.4-1.el9
[2025-11-23 13:40:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 13:40:45] c7-3-17.aglt2.org
[2025-11-23 13:40:45] apptainer works
[2025-11-23 13:40:45] Set ATHENA_PROC_NUMBER=8
[2025-11-23 13:40:45] Set ATHENA_CORE_NUMBER=8
[2025-11-23 13:40:45] Starting ATLAS job with PandaID=6893876883
[2025-11-23 13:40:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 06:12:25]  *** The last 200 lines of the pilot log: ***
[2025-11-24 06:12:25] 2025-11-24 11:07:00,328 | INFO     | monitor loop #3749: job 0:6893876883 is in state 'finished'
[2025-11-24 06:12:25] 2025-11-24 11:07:00,328 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 06:12:25] 2025-11-24 11:07:00,593 | INFO     | time since job start (59161s) is within the limit (172800.0s)
[2025-11-24 06:12:25] 2025-11-24 11:07:00,777 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 06:12:25] 2025-11-24 11:07:00,788 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3198.2719687500007
[2025-11-24 06:12:25] 2025-11-24 11:07:00,816 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6893876883/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 06:12:25] 2025-11-24 11:07:00,817 | INFO     | extracted standard info from prmon json
[2025-11-24 06:12:25] 2025-11-24 11:07:00,817 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 06:12:25] 2025-11-24 11:07:00,817 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 06:12:25] 2025-11-24 11:07:00,832 | INFO     | fitting pss+swap vs Time
[2025-11-24 06:12:25] 2025-11-24 11:07:00,847 | INFO     | sum of square deviations: 282138391328.94293
[2025-11-24 06:12:25] 2025-11-24 11:07:00,890 | INFO     | sum of deviations: 2690300567887.508
[2025-11-24 06:12:25] 2025-11-24 11:07:00,891 | INFO     | mean x: 1763952819.7389061
[2025-11-24 06:12:25] 2025-11-24 11:07:00,891 | INFO     | mean y: 2899669.1403508773
[2025-11-24 06:12:25] 2025-11-24 11:07:00,891 | INFO     | intersect: -16817084489.405216
[2025-11-24 06:12:25] 2025-11-24 11:07:00,896 | INFO     | chi2: 6.04761513273972
[2025-11-24 06:12:25] 2025-11-24 11:07:00,897 | INFO     | sum of square deviations: 277793765451.19946
[2025-11-24 06:12:25] 2025-11-24 11:07:00,935 | INFO     | sum of deviations: 3002027882391.984
[2025-11-24 06:12:25] 2025-11-24 11:07:00,935 | INFO     | mean x: 1763952667.2427385
[2025-11-24 06:12:25] 2025-11-24 11:07:00,936 | INFO     | mean y: 2910606.854771784
[2025-11-24 06:12:25] 2025-11-24 11:07:00,936 | INFO     | intersect: -19059558565.847626
[2025-11-24 06:12:25] 2025-11-24 11:07:00,937 | INFO     | chi2: 2.9601242372690093
[2025-11-24 06:12:25] 2025-11-24 11:07:00,937 | INFO     | current chi2=2.9601242372690093 (change=51.05303210774923 %)
[2025-11-24 06:12:25] 2025-11-24 11:07:00,937 | INFO     | sum of square deviations: 273493801578.8967
[2025-11-24 06:12:25] 2025-11-24 11:07:00,979 | INFO     | sum of deviations: 3036301806072.203
[2025-11-24 06:12:25] 2025-11-24 11:07:00,979 | INFO     | mean x: 1763952514.7434828
[2025-11-24 06:12:25] 2025-11-24 11:07:00,979 | INFO     | mean y: 2911815.7122002086
[2025-11-24 06:12:25] 2025-11-24 11:07:00,980 | INFO     | intersect: -19580318866.012005
[2025-11-24 06:12:25] 2025-11-24 11:07:00,980 | INFO     | chi2: 2.7060565535980303
[2025-11-24 06:12:25] 2025-11-24 11:07:00,980 | INFO     | current chi2=2.7060565535980303 (change=8.583007445166563 %)
[2025-11-24 06:12:25] 2025-11-24 11:07:00,981 | INFO     | right removable region: 958
[2025-11-24 06:12:25] 2025-11-24 11:07:00,981 | INFO     | sum of square deviations: 277793387556.68414
[2025-11-24 06:12:25] 2025-11-24 11:07:01,025 | INFO     | sum of deviations: 2442496832662.877
[2025-11-24 06:12:25] 2025-11-24 11:07:01,025 | INFO     | mean x: 1763952972.2417011
[2025-11-24 06:12:25] 2025-11-24 11:07:01,026 | INFO     | mean y: 2908353.17219917
[2025-11-24 06:12:25] 2025-11-24 11:07:01,026 | INFO     | intersect: -15506638456.279764
[2025-11-24 06:12:25] 2025-11-24 11:07:01,026 | INFO     | chi2: 4.03401139914993
[2025-11-24 06:12:25] 2025-11-24 11:07:01,027 | INFO     | current chi2=4.03401139914993 (change=33.295831321818554 %)
[2025-11-24 06:12:25] 2025-11-24 11:07:01,027 | INFO     | sum of square deviations: 273493221834.40845
[2025-11-24 06:12:25] 2025-11-24 11:07:01,134 | INFO     | sum of deviations: 2350467264128.94
[2025-11-24 06:12:25] 2025-11-24 11:07:01,134 | INFO     | mean x: 1763953124.7445254
[2025-11-24 06:12:25] 2025-11-24 11:07:01,134 | INFO     | mean y: 2911616.7507820646
[2025-11-24 06:12:25] 2025-11-24 11:07:01,134 | INFO     | intersect: -15156930544.457516
[2025-11-24 06:12:25] 2025-11-24 11:07:01,135 | INFO     | chi2: 3.9473906435721324
[2025-11-24 06:12:25] 2025-11-24 11:07:01,135 | INFO     | current chi2=3.9473906435721324 (change=2.147261051271456 %)
[2025-11-24 06:12:25] 2025-11-24 11:07:01,143 | INFO     | left removable region: 20
[2025-11-24 06:12:25] 2025-11-24 11:07:01,144 | INFO     | sum of square deviations: 255917739842.12405
[2025-11-24 06:12:25] 2025-11-24 11:07:01,197 | INFO     | sum of deviations: 2524552667735.3984
[2025-11-24 06:12:25] 2025-11-24 11:07:01,198 | INFO     | mean x: 1763953094.250533
[2025-11-24 06:12:25] 2025-11-24 11:07:01,198 | INFO     | mean y: 2929974.7046908317
[2025-11-24 06:12:25] 2025-11-24 11:07:01,198 | INFO     | intersect: -17397944589.901398
[2025-11-24 06:12:25] 2025-11-24 11:07:01,199 | INFO     | chi2: 0.47474428010103126
[2025-11-24 06:12:25] 2025-11-24 11:07:01,199 | INFO     | current memory leak: 9.86 B/s (using 938 data points, chi2=0.47)
[2025-11-24 06:12:25] 2025-11-24 11:07:01,208 | INFO     | could have reported an average CPU frequency of 3125 MHz (36 samples)
[2025-11-24 06:12:25] 2025-11-24 11:07:01,208 | INFO     | ..............................
[2025-11-24 06:12:25] 2025-11-24 11:07:01,208 | INFO     | . Timing measurements:
[2025-11-24 06:12:25] 2025-11-24 11:07:01,208 | INFO     | . get job = 0 s
[2025-11-24 06:12:25] 2025-11-24 11:07:01,208 | INFO     | . initial setup = 2 s
[2025-11-24 06:12:25] 2025-11-24 11:07:01,208 | INFO     | . payload setup = 8 s
[2025-11-24 06:12:25] 2025-11-24 11:07:01,208 | INFO     | . stage-in = 0 s
[2025-11-24 06:12:25] 2025-11-24 11:07:01,208 | INFO     | . payload execution = 59113 s
[2025-11-24 06:12:25] 2025-11-24 11:07:01,208 | INFO     | . stage-out = 5 s
[2025-11-24 06:12:25] 2025-11-24 11:07:01,209 | INFO     | . log creation = 1 s
[2025-11-24 06:12:25] 2025-11-24 11:07:01,209 | INFO     | ..............................
[2025-11-24 06:12:25] 2025-11-24 11:07:01,432 | INFO     | 
[2025-11-24 06:12:25] 2025-11-24 11:07:01,433 | INFO     | job summary report
[2025-11-24 06:12:25] 2025-11-24 11:07:01,433 | INFO     | --------------------------------------------------
[2025-11-24 06:12:25] 2025-11-24 11:07:01,433 | INFO     | PanDA job id: 6893876883
[2025-11-24 06:12:25] 2025-11-24 11:07:01,433 | INFO     | task id: 47523449
[2025-11-24 06:12:25] 2025-11-24 11:07:01,433 | INFO     | errors: (none)
[2025-11-24 06:12:25] 2025-11-24 11:07:01,433 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 06:12:25] 2025-11-24 11:07:01,433 | INFO     | pilot state: finished 
[2025-11-24 06:12:25] 2025-11-24 11:07:01,433 | INFO     | transexitcode: 0
[2025-11-24 06:12:25] 2025-11-24 11:07:01,433 | INFO     | exeerrorcode: 0
[2025-11-24 06:12:25] 2025-11-24 11:07:01,433 | INFO     | exeerrordiag: 
[2025-11-24 06:12:25] 2025-11-24 11:07:01,433 | INFO     | exitcode: 0
[2025-11-24 06:12:25] 2025-11-24 11:07:01,433 | INFO     | exitmsg: OK
[2025-11-24 06:12:25] 2025-11-24 11:07:01,434 | INFO     | cpuconsumptiontime: 195712 s
[2025-11-24 06:12:25] 2025-11-24 11:07:01,434 | INFO     | nevents: 1000
[2025-11-24 06:12:25] 2025-11-24 11:07:01,434 | INFO     | neventsw: 0
[2025-11-24 06:12:25] 2025-11-24 11:07:01,434 | INFO     | pid: 2860215
[2025-11-24 06:12:25] 2025-11-24 11:07:01,434 | INFO     | pgrp: 2860215
[2025-11-24 06:12:25] 2025-11-24 11:07:01,434 | INFO     | corecount: 8
[2025-11-24 06:12:25] 2025-11-24 11:07:01,434 | INFO     | event service: False
[2025-11-24 06:12:25] 2025-11-24 11:07:01,434 | INFO     | sizes: {0: 2298750, 6: 2299012, 11: 2299040, 59123: 2351945, 59124: 2351944, 59131: 2360994, 59133: 2361206, 59144: 2361452}
[2025-11-24 06:12:25] 2025-11-24 11:07:01,434 | INFO     | --------------------------------------------------
[2025-11-24 06:12:25] 2025-11-24 11:07:01,434 | INFO     | 
[2025-11-24 06:12:25] 2025-11-24 11:07:01,434 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-11-24 06:12:25] 2025-11-24 11:07:01,499 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 06:12:25] 2025-11-24 11:07:01,499 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 06:12:25] 2025-11-24 11:07:01,499 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 06:12:25] 2025-11-24 11:07:01,499 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 06:12:25] 2025-11-24 11:07:01,499 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 06:12:25] 2025-11-24 11:07:01,499 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 06:12:25] 2025-11-24 11:07:01,500 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 06:12:25] 2025-11-24 11:07:01,500 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 06:12:25] 2025-11-24 11:07:01,500 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 06:12:25] 2025-11-24 11:07:01,500 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 06:12:25] 2025-11-24 11:07:01,500 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 06:12:25] 2025-11-24 11:07:01,500 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 06:12:25] 2025-11-24 11:07:01,500 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 06:12:25] 2025-11-24 11:07:01,500 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 06:12:25] 2025-11-24 11:07:01,500 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 06:12:25] 2025-11-24 11:07:01,500 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 06:12:25] 2025-11-24 11:07:01,500 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 06:12:25] 2025-11-24 11:07:01,500 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 06:12:25] 2025-11-24 11:07:01,500 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 06:12:25] 2025-11-24 11:07:01,501 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 06:12:25] 2025-11-24 11:07:01,501 | INFO     | job 6893876883 has completed (purged errors)
[2025-11-24 06:12:25] 2025-11-24 11:07:01,501 | INFO     | overall cleanup function is called
[2025-11-24 06:12:25] 2025-11-24 11:07:02,546 | INFO     | --- collectZombieJob: --- 10, [2860215]
[2025-11-24 06:12:25] 2025-11-24 11:07:02,551 | INFO     | zombie collector waiting for pid 2860215
[2025-11-24 06:12:25] 2025-11-24 11:07:02,554 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 06:12:25] 2025-11-24 11:07:02,554 | INFO     | collected zombie processes
[2025-11-24 06:12:25] 2025-11-24 11:07:02,554 | INFO     | will attempt to kill all subprocesses of pid=2860215
[2025-11-24 06:12:25] 2025-11-24 11:07:03,216 | INFO     | process IDs to be killed: [2860215] (in reverse order)
[2025-11-24 06:12:25] 2025-11-24 11:07:03,378 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 06:12:25] 2025-11-24 11:07:03,378 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 06:12:25] 2025-11-24 11:07:03,399 | INFO     | did not find any defunct processes belonging to 2860215
[2025-11-24 06:12:25] 2025-11-24 11:07:03,420 | INFO     | did not find any defunct processes belonging to 2860215
[2025-11-24 06:12:25] 2025-11-24 11:07:03,421 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 06:12:25] 2025-11-24 11:07:03,421 | INFO     | ready for new job
[2025-11-24 06:12:25] 2025-11-24 11:07:03,421 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 06:12:25] 2025-11-24 11:07:03,429 | INFO     | ***************************************
[2025-11-24 06:12:25] 2025-11-24 11:07:03,430 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 06:12:25] 2025-11-24 11:07:03,430 | INFO     | ***************************************
[2025-11-24 06:12:25] 2025-11-24 11:07:03,430 | INFO     | 
[2025-11-24 06:12:25] 2025-11-24 11:07:03,452 | INFO     | architecture information:
[2025-11-24 06:12:25] 2025-11-24 11:07:03,475 | INFO     | executing command: cat /etc/os-release
[2025-11-24 06:12:25] 2025-11-24 11:07:03,509 | INFO     | cat /etc/os-release:
[2025-11-24 06:12:25] NAME="CentOS Linux"
[2025-11-24 06:12:25] VERSION="7 (Core)"
[2025-11-24 06:12:25] ID="centos"
[2025-11-24 06:12:25] ID_LIKE="rhel fedora"
[2025-11-24 06:12:25] VERSION_ID="7"
[2025-11-24 06:12:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 06:12:25] ANSI_COLOR="0;31"
[2025-11-24 06:12:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 06:12:25] HOME_URL="https://www.centos.org/"
[2025-11-24 06:12:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 06:12:25] 
[2025-11-24 06:12:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 06:12:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 06:12:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 06:12:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 06:12:25] 
[2025-11-24 06:12:25] 2025-11-24 11:07:03,509 | INFO     | ***************************************
[2025-11-24 06:12:25] 2025-11-24 11:07:04,016 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-11-24 06:12:25] 2025-11-24 11:07:04,038 | INFO     | sufficient remaining disk space (65385005056 B)
[2025-11-24 06:12:25] 2025-11-24 11:07:04,038 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 06:12:25] 2025-11-24 11:07:04,038 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 06:12:25] 2025-11-24 11:07:04,039 | INFO     | update_server=False
[2025-11-24 06:12:25] 2025-11-24 11:07:04,039 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 06:12:25] 2025-11-24 11:07:04,039 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 06:12:25] 2025-11-24 11:07:04,041 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 06:12:25] 2025-11-24 11:07:04,042 | INFO     | aborting loop
[2025-11-24 06:12:25] 2025-11-24 11:07:04,201 | INFO     | all payload control threads have been joined
[2025-11-24 06:12:25] 2025-11-24 11:07:04,348 | INFO     | all data control threads have been joined
[2025-11-24 06:12:25] 2025-11-24 11:07:04,866 | INFO     | all job control threads have been joined
[2025-11-24 06:12:25] 2025-11-24 11:07:05,044 | INFO     | [job] retrieve thread has finished
[2025-11-24 06:12:25] 2025-11-24 11:07:05,047 | INFO     | [job] job monitor thread has finished
[2025-11-24 06:12:25] 2025-11-24 11:07:05,188 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 06:12:25] 2025-11-24 11:07:05,207 | INFO     | [payload] control thread has finished
[2025-11-24 06:12:25] 2025-11-24 11:07:05,223 | INFO     | [data] copytool_in thread has finished
[2025-11-24 06:12:25] 2025-11-24 11:07:05,346 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 06:12:25] 2025-11-24 11:07:05,355 | INFO     | [data] control thread has finished
[2025-11-24 06:12:25] 2025-11-24 11:07:05,432 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 06:12:25] 2025-11-24 11:07:05,579 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 06:12:25] 2025-11-24 11:07:05,591 | INFO     | [job] validate thread has finished
[2025-11-24 06:12:25] 2025-11-24 11:07:05,877 | INFO     | [job] control thread has finished
[2025-11-24 06:12:25] 2025-11-24 11:07:06,045 | INFO     | [data] copytool_out thread has finished
[2025-11-24 06:12:25] 2025-11-24 11:07:06,164 | INFO     | [payload] validate_post thread has finished
[2025-11-24 06:12:25] 2025-11-24 11:07:06,199 | INFO     | [payload] failed_post thread has finished
[2025-11-24 06:12:25] 2025-11-24 11:07:06,408 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 06:12:25] 2025-11-24 11:07:06,451 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 06:12:25] 2025-11-24 11:07:07,457 | INFO     | [job] queue monitor thread has finished
[2025-11-24 06:12:25] 2025-11-24 11:07:09,206 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 06:12:25] 2025-11-24 11:07:34,280 | INFO     | PID=2817025 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 06:12:25] 2025-11-24 11:07:34,280 | INFO     | .. there are 40 such processes running
[2025-11-24 06:12:25] 2025-11-24 11:07:34,281 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 06:12:25] 2025-11-24 11:07:34,281 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 06:12:25] 2025-11-24 11:07:34,281 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 06:12:25] 2025-11-24 11:07:41,891 | INFO     | [monitor] cgroup control has ended
[2025-11-24 06:12:25] 2025-11-24 11:07:42,934 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140072724932416)>', '<ExcThread(monitor, started 140072087181056)>']
[2025-11-24 06:12:25] 2025-11-24 11:07:43,335 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 06:12:25] 2025-11-24 11:07:43,335 | INFO     | [monitor] control thread has ended
[2025-11-24 06:12:25] 2025-11-24 11:07:47,995 | INFO     | all workflow threads have been joined
[2025-11-24 06:12:25] 2025-11-24 11:07:47,996 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 06:12:25] 2025-11-24 11:07:47,996 | INFO     | traces error code: 0
[2025-11-24 06:12:25] 2025-11-24 11:07:47,996 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 06:12:25] 2025-11-24 11:07:48,105 [wrapper] ==== pilot stdout END ====
[2025-11-24 06:12:25] 2025-11-24 11:07:48,107 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 06:12:25] 2025-11-24 11:07:48,110 [wrapper] pilotpid: 2817025
[2025-11-24 06:12:25] 2025-11-24 11:07:48,112 [wrapper] Pilot exit status: 0
[2025-11-24 06:12:25] 2025-11-24 11:07:48,127 [wrapper] pandaids: 6893876883 6893876883
[2025-11-24 06:12:25] 2025-11-24 11:07:48,233 [wrapper] cleanup supervisor_pilot 2633030 2817026
[2025-11-24 06:12:25] 2025-11-24 11:07:48,235 [wrapper] Test setup, not cleaning
[2025-11-24 06:12:25] 2025-11-24 11:07:48,252 [wrapper] apfmon messages muted
[2025-11-24 06:12:25] 2025-11-24 11:07:48,256 [wrapper] ==== wrapper stdout END ====
[2025-11-24 06:12:25] 2025-11-24 11:07:48,258 [wrapper] ==== wrapper stderr END ====
[2025-11-24 06:12:25]  *** Error codes and diagnostics ***
[2025-11-24 06:12:25]     "exeErrorCode": 0,
[2025-11-24 06:12:25]     "exeErrorDiag": "",
[2025-11-24 06:12:25]     "pilotErrorCode": 0,
[2025-11-24 06:12:25]     "pilotErrorDiag": "",
[2025-11-24 06:12:25]  *** Listing of results directory ***
[2025-11-24 06:12:25] total 1714932
[2025-11-24 06:12:25] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-24 06:12:25] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 12:52 pilot3.tar.gz
[2025-11-24 06:12:25] -rwx------. 1 boincer umatlas     36292 Nov 20 12:58 runpilot2-wrapper.sh
[2025-11-24 06:12:25] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 12:58 queuedata.json
[2025-11-24 06:12:25] -rw-r--r--. 1 boincer umatlas       100 Nov 23 00:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 06:12:25] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 00:10 run_atlas
[2025-11-24 06:12:25] -rw-r--r--. 1 boincer umatlas       105 Nov 23 00:10 job.xml
[2025-11-24 06:12:25] -rw-r--r--. 3 boincer umatlas 411067994 Nov 23 00:10 EVNT.47493127._000781.pool.root.1
[2025-11-24 06:12:25] -rw-r--r--. 3 boincer umatlas 411067994 Nov 23 00:10 ATLAS.root_0
[2025-11-24 06:12:25] -rw-r--r--. 2 boincer umatlas    590098 Nov 23 00:10 input.tar.gz
[2025-11-24 06:12:25] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:10 start_atlas.sh
[2025-11-24 06:12:25] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 00:10 shared
[2025-11-24 06:12:25] -rw-r--r--. 1 boincer umatlas         0 Nov 23 00:10 boinc_lockfile
[2025-11-24 06:12:25] -rw-r--r--. 1 boincer umatlas      2782 Nov 23 13:40 pandaJob.out
[2025-11-24 06:12:25] -rw-------. 1 boincer umatlas        57 Nov 23 13:40 setup.sh.local
[2025-11-24 06:12:25] -rw-------. 1 boincer umatlas    989786 Nov 23 13:40 agis_schedconf.cvmfs.json
[2025-11-24 06:12:25] -rw-r--r--. 1 boincer umatlas       533 Nov 24 05:58 boinc_task_state.xml
[2025-11-24 06:12:25] -rw-------. 1 boincer umatlas 910335233 Nov 24 06:06 HITS.47523449._007801.pool.root.1
[2025-11-24 06:12:25] -rw-------. 1 boincer umatlas      1060 Nov 24 06:06 memory_monitor_summary.json
[2025-11-24 06:12:25] -rw-------. 1 boincer umatlas   1526164 Nov 24 06:06 agis_ddmendpoints.agis.ALL.json
[2025-11-24 06:12:25] -rw-------. 1 boincer umatlas   2119748 Nov 24 06:06 log.47523449._007801.job.log.tgz.1
[2025-11-24 06:12:25] -rw-------. 1 boincer umatlas      8615 Nov 24 06:07 heartbeat.json
[2025-11-24 06:12:25] -rw-------. 1 boincer umatlas        95 Nov 24 06:07 pilot_heartbeat.json
[2025-11-24 06:12:25] -rw-------. 1 boincer umatlas      4824 Nov 24 06:07 pilotlog.txt
[2025-11-24 06:12:25] -rw-------. 1 boincer umatlas   7722326 Nov 24 06:07 log.47523449._007801.job.log.1
[2025-11-24 06:12:25] -rw-------. 1 boincer umatlas       353 Nov 24 06:07 output.list
[2025-11-24 06:12:25] -rw-r--r--. 1 boincer umatlas       620 Nov 24 06:07 runtime_log
[2025-11-24 06:12:25] -rw-------. 1 boincer umatlas   9861120 Nov 24 06:07 result.tar.gz
[2025-11-24 06:12:25] -rw-r--r--. 1 boincer umatlas      9423 Nov 24 06:07 runtime_log.err
[2025-11-24 06:12:25] -rw-------. 1 boincer umatlas       788 Nov 24 06:07 9v9LDme6Ng8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm3vGKDmjMQ7Pm.diag
[2025-11-24 06:12:25] -rw-r--r--. 1 boincer umatlas      6948 Nov 24 06:12 init_data.xml
[2025-11-24 06:12:25] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 06:12 boinc_mmap_file
[2025-11-24 06:12:25] -rw-r--r--. 1 boincer umatlas        29 Nov 24 06:12 wrapper_checkpoint.txt
[2025-11-24 06:12:25] -rw-r--r--. 1 boincer umatlas     23631 Nov 24 06:12 stderr.txt
[2025-11-24 06:12:25] HITS file was successfully produced:
[2025-11-24 06:12:25] -rw-------. 1 boincer umatlas 910335233 Nov 24 06:06 shared/HITS.pool.root.1
[2025-11-24 06:12:25]  *** Contents of shared directory: ***
[2025-11-24 06:12:25] total 1300672
[2025-11-24 06:12:25] -rw-r--r--. 3 boincer umatlas 411067994 Nov 23 00:10 ATLAS.root_0
[2025-11-24 06:12:25] -rw-r--r--. 2 boincer umatlas    590098 Nov 23 00:10 input.tar.gz
[2025-11-24 06:12:25] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:10 start_atlas.sh
[2025-11-24 06:12:25] -rw-------. 1 boincer umatlas 910335233 Nov 24 06:06 HITS.pool.root.1
[2025-11-24 06:12:25] -rw-------. 1 boincer umatlas   9861120 Nov 24 06:07 result.tar.gz
06:12:27 (2790620): run_atlas exited; CPU time 197035.355209
06:12:27 (2790620): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN