Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:31:23 (1514320): wrapper (7.7.26015): starting
08:31:23 (1514320): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 08:31:23] Arguments: --nthreads 9
[2025-11-24 08:31:23] Threads: 9
[2025-11-24 08:31:23] Checking for CVMFS
[2025-11-24 08:31:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 08:31:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 08:31:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 08:31:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 08:31:24] 2.13.3.0 9735 27234 302756 153247 2 387 32694984 32935936 21426 16776704 0 123852292 99.767 75646912 32823 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 08:31:24] CVMFS is ok
[2025-11-24 08:31:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 08:31:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 08:31:24] Further information can be found at the LHC@home message board.
[2025-11-24 08:31:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 08:31:24] Checking for apptainer binary...
[2025-11-24 08:31:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 08:31:24] Running /usr/bin/apptainer --version
[2025-11-24 08:31:24] apptainer version 1.4.4-1.el9
[2025-11-24 08:31:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 08:31:24] c-8-15.aglt2.org
[2025-11-24 08:31:24] apptainer works
[2025-11-24 08:31:24] Set ATHENA_PROC_NUMBER=9
[2025-11-24 08:31:24] Set ATHENA_CORE_NUMBER=9
[2025-11-24 08:31:24] Starting ATLAS job with PandaID=6894289754
[2025-11-24 08:31:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:30:47 (280361): wrapper (7.7.26015): starting
23:30:47 (280361): wrapper: running run_atlas (--nthreads 11)
[2025-11-24 23:30:47] Arguments: --nthreads 11
[2025-11-24 23:30:47] Threads: 11
[2025-11-24 23:30:47] This job has been restarted, cleaning up previous attempt
[2025-11-24 23:30:47] Checking for CVMFS
[2025-11-24 23:30:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 23:30:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 23:30:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 23:30:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 23:30:48] 2.13.3.0 9735 28134 303204 153270 0 274 18551769 32935937 22805 16776704 0 127347853 99.759 80375479 32992 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 23:30:48] CVMFS is ok
[2025-11-24 23:30:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 23:30:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 23:30:48] Further information can be found at the LHC@home message board.
[2025-11-24 23:30:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 23:30:48] Checking for apptainer binary...
[2025-11-24 23:30:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 23:30:48] Running /usr/bin/apptainer --version
[2025-11-24 23:30:48] apptainer version 1.4.4-1.el9
[2025-11-24 23:30:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 23:30:48] c-8-15.aglt2.org
[2025-11-24 23:30:48] apptainer works
[2025-11-24 23:30:48] Set ATHENA_PROC_NUMBER=11
[2025-11-24 23:30:48] Set ATHENA_CORE_NUMBER=11
[2025-11-24 23:30:48] Starting ATLAS job with PandaID=6894289754
[2025-11-24 23:30:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 03:46:25]  *** The last 200 lines of the pilot log: ***
[2025-11-26 03:46:25] 2025-11-26 08:45:31,431 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.186275
[2025-11-26 03:46:25] 2025-11-26 08:45:31,438 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6894289754/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 03:46:25] 2025-11-26 08:45:31,439 | INFO     | extracted standard info from prmon json
[2025-11-26 03:46:25] 2025-11-26 08:45:31,439 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 03:46:25] 2025-11-26 08:45:31,439 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 03:46:25] 2025-11-26 08:45:31,469 | INFO     | fitting pss+swap vs Time
[2025-11-26 03:46:25] 2025-11-26 08:45:31,471 | INFO     | sum of square deviations: 1436392883820.909
[2025-11-26 03:46:25] 2025-11-26 08:45:31,543 | INFO     | sum of deviations: 8694785861004.046
[2025-11-26 03:46:25] 2025-11-26 08:45:31,543 | INFO     | mean x: 1764095900.584283
[2025-11-26 03:46:25] 2025-11-26 08:45:31,544 | INFO     | mean y: 3419382.971205759
[2025-11-26 03:46:25] 2025-11-26 08:45:31,544 | INFO     | intersect: -10675021221.004827
[2025-11-26 03:46:25] 2025-11-26 08:45:31,546 | INFO     | chi2: 8.209102705322438
[2025-11-26 03:46:25] 2025-11-26 08:45:31,549 | INFO     | sum of square deviations: 1423507621224.9143
[2025-11-26 03:46:25] 2025-11-26 08:45:31,619 | INFO     | time since job start (101672s) is within the limit (172800.0s)
[2025-11-26 03:46:25] 2025-11-26 08:45:31,619 | INFO     | sum of deviations: 9404253240361.986
[2025-11-26 03:46:25] 2025-11-26 08:45:31,620 | INFO     | mean x: 1764095748.0920577
[2025-11-26 03:46:25] 2025-11-26 08:45:31,620 | INFO     | mean y: 3427778.8628158844
[2025-11-26 03:46:25] 2025-11-26 08:45:31,620 | INFO     | intersect: -11650885066.352583
[2025-11-26 03:46:25] 2025-11-26 08:45:31,622 | INFO     | chi2: 4.63333271782789
[2025-11-26 03:46:25] 2025-11-26 08:45:31,622 | INFO     | current chi2=4.63333271782789 (change=43.55859727733908 %)
[2025-11-26 03:46:25] 2025-11-26 08:45:31,624 | INFO     | sum of square deviations: 1410699662403.7202
[2025-11-26 03:46:25] 2025-11-26 08:45:31,693 | INFO     | sum of deviations: 9840679206439.312
[2025-11-26 03:46:25] 2025-11-26 08:45:31,693 | INFO     | mean x: 1764095595.5998793
[2025-11-26 03:46:25] 2025-11-26 08:45:31,693 | INFO     | mean y: 3432971.5932407966
[2025-11-26 03:46:25] 2025-11-26 08:45:31,693 | INFO     | intersect: -12302445670.36448
[2025-11-26 03:46:25] 2025-11-26 08:45:31,695 | INFO     | chi2: 2.9142896852322155
[2025-11-26 03:46:25] 2025-11-26 08:45:31,696 | INFO     | current chi2=2.9142896852322155 (change=37.1016531142094 %)
[2025-11-26 03:46:25] 2025-11-26 08:45:31,698 | INFO     | sum of square deviations: 1397968269430.8835
[2025-11-26 03:46:25] 2025-11-26 08:45:31,766 | INFO     | sum of deviations: 9939348486698.26
[2025-11-26 03:46:25] 2025-11-26 08:45:31,767 | INFO     | mean x: 1764095443.1047215
[2025-11-26 03:46:25] 2025-11-26 08:45:31,767 | INFO     | mean y: 3434151.6343825664
[2025-11-26 03:46:25] 2025-11-26 08:45:31,767 | INFO     | intersect: -12539024612.43494
[2025-11-26 03:46:25] 2025-11-26 08:45:31,769 | INFO     | chi2: 2.6736893293257817
[2025-11-26 03:46:25] 2025-11-26 08:45:31,769 | INFO     | current chi2=2.6736893293257817 (change=8.255883316117984 %)
[2025-11-26 03:46:25] 2025-11-26 08:45:31,769 | INFO     | right removable region: 1651
[2025-11-26 03:46:25] 2025-11-26 08:45:31,771 | INFO     | sum of square deviations: 1423505297928.4631
[2025-11-26 03:46:25] 2025-11-26 08:45:31,850 | INFO     | sum of deviations: 8182462622884.09
[2025-11-26 03:46:25] 2025-11-26 08:45:31,850 | INFO     | mean x: 1764096053.0902526
[2025-11-26 03:46:25] 2025-11-26 08:45:31,851 | INFO     | mean y: 3425440.5860409145
[2025-11-26 03:46:25] 2025-11-26 08:45:31,851 | INFO     | intersect: -10136789730.087486
[2025-11-26 03:46:25] 2025-11-26 08:45:31,853 | INFO     | chi2: 6.223871934852077
[2025-11-26 03:46:25] 2025-11-26 08:45:31,853 | INFO     | current chi2=6.223871934852077 (change=24.183285819815865 %)
[2025-11-26 03:46:25] 2025-11-26 08:45:31,853 | INFO     | left removable region: 10
[2025-11-26 03:46:25] 2025-11-26 08:45:31,855 | INFO     | sum of square deviations: 1370225912739.903
[2025-11-26 03:46:25] 2025-11-26 08:45:31,922 | INFO     | sum of deviations: 9229097164172.703
[2025-11-26 03:46:25] 2025-11-26 08:45:31,922 | INFO     | mean x: 1764095717.616697
[2025-11-26 03:46:25] 2025-11-26 08:45:31,922 | INFO     | mean y: 3442653.638634979
[2025-11-26 03:46:25] 2025-11-26 08:45:31,922 | INFO     | intersect: -11878547486.388687
[2025-11-26 03:46:25] 2025-11-26 08:45:31,924 | INFO     | chi2: 0.5660796057222417
[2025-11-26 03:46:25] 2025-11-26 08:45:31,925 | INFO     | current memory leak: 6.74 B/s (using 1641 data points, chi2=0.57)
[2025-11-26 03:46:25] 2025-11-26 08:45:31,927 | INFO     | could have reported an average CPU frequency of 2600 MHz (59 samples)
[2025-11-26 03:46:25] 2025-11-26 08:45:31,927 | INFO     | ..............................
[2025-11-26 03:46:25] 2025-11-26 08:45:31,927 | INFO     | . Timing measurements:
[2025-11-26 03:46:25] 2025-11-26 08:45:31,927 | INFO     | . get job = 0 s
[2025-11-26 03:46:25] 2025-11-26 08:45:31,927 | INFO     | . initial setup = 2 s
[2025-11-26 03:46:25] 2025-11-26 08:45:31,927 | INFO     | . payload setup = 5 s
[2025-11-26 03:46:25] 2025-11-26 08:45:31,927 | INFO     | . stage-in = 0 s
[2025-11-26 03:46:25] 2025-11-26 08:45:31,927 | INFO     | . payload execution = 101637 s
[2025-11-26 03:46:25] 2025-11-26 08:45:31,927 | INFO     | . stage-out = 4 s
[2025-11-26 03:46:25] 2025-11-26 08:45:31,927 | INFO     | . log creation = 1 s
[2025-11-26 03:46:25] 2025-11-26 08:45:31,928 | INFO     | ..............................
[2025-11-26 03:46:25] 2025-11-26 08:45:32,029 | INFO     | 
[2025-11-26 03:46:25] 2025-11-26 08:45:32,029 | INFO     | job summary report
[2025-11-26 03:46:25] 2025-11-26 08:45:32,030 | INFO     | --------------------------------------------------
[2025-11-26 03:46:25] 2025-11-26 08:45:32,030 | INFO     | PanDA job id: 6894289754
[2025-11-26 03:46:25] 2025-11-26 08:45:32,030 | INFO     | task id: 47533967
[2025-11-26 03:46:25] 2025-11-26 08:45:32,030 | INFO     | errors: (none)
[2025-11-26 03:46:25] 2025-11-26 08:45:32,030 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 03:46:25] 2025-11-26 08:45:32,030 | INFO     | pilot state: finished 
[2025-11-26 03:46:25] 2025-11-26 08:45:32,030 | INFO     | transexitcode: 0
[2025-11-26 03:46:25] 2025-11-26 08:45:32,030 | INFO     | exeerrorcode: 0
[2025-11-26 03:46:25] 2025-11-26 08:45:32,030 | INFO     | exeerrordiag: 
[2025-11-26 03:46:25] 2025-11-26 08:45:32,030 | INFO     | exitcode: 0
[2025-11-26 03:46:25] 2025-11-26 08:45:32,030 | INFO     | exitmsg: OK
[2025-11-26 03:46:25] 2025-11-26 08:45:32,030 | INFO     | cpuconsumptiontime: 301455 s
[2025-11-26 03:46:25] 2025-11-26 08:45:32,030 | INFO     | nevents: 1000
[2025-11-26 03:46:25] 2025-11-26 08:45:32,031 | INFO     | neventsw: 0
[2025-11-26 03:46:25] 2025-11-26 08:45:32,031 | INFO     | pid: 310215
[2025-11-26 03:46:25] 2025-11-26 08:45:32,031 | INFO     | pgrp: 310215
[2025-11-26 03:46:25] 2025-11-26 08:45:32,031 | INFO     | corecount: 11
[2025-11-26 03:46:25] 2025-11-26 08:45:32,031 | INFO     | event service: False
[2025-11-26 03:46:25] 2025-11-26 08:45:32,031 | INFO     | sizes: {0: 2284032, 1: 2284287, 5: 2284549, 12: 2284605, 101644: 2354770, 101649: 2363953, 101658: 2364143}
[2025-11-26 03:46:25] 2025-11-26 08:45:32,031 | INFO     | --------------------------------------------------
[2025-11-26 03:46:25] 2025-11-26 08:45:32,031 | INFO     | 
[2025-11-26 03:46:25] 2025-11-26 08:45:32,031 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-26 03:46:25] 2025-11-26 08:45:32,092 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 03:46:25] 2025-11-26 08:45:32,092 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 03:46:25] 2025-11-26 08:45:32,092 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 03:46:25] 2025-11-26 08:45:32,092 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 03:46:25] 2025-11-26 08:45:32,092 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 03:46:25] 2025-11-26 08:45:32,092 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 03:46:25] 2025-11-26 08:45:32,093 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 03:46:25] 2025-11-26 08:45:32,093 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 03:46:25] 2025-11-26 08:45:32,093 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 03:46:25] 2025-11-26 08:45:32,093 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 03:46:25] 2025-11-26 08:45:32,093 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 03:46:25] 2025-11-26 08:45:32,093 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 03:46:25] 2025-11-26 08:45:32,093 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 03:46:25] 2025-11-26 08:45:32,093 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 03:46:25] 2025-11-26 08:45:32,093 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 03:46:25] 2025-11-26 08:45:32,093 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 03:46:25] 2025-11-26 08:45:32,093 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 03:46:25] 2025-11-26 08:45:32,093 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 03:46:25] 2025-11-26 08:45:32,094 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 03:46:25] 2025-11-26 08:45:32,094 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 03:46:25] 2025-11-26 08:45:32,094 | INFO     | job 6894289754 has completed (purged errors)
[2025-11-26 03:46:25] 2025-11-26 08:45:32,094 | INFO     | overall cleanup function is called
[2025-11-26 03:46:25] 2025-11-26 08:45:33,112 | INFO     | --- collectZombieJob: --- 10, [310215]
[2025-11-26 03:46:25] 2025-11-26 08:45:33,113 | INFO     | zombie collector waiting for pid 310215
[2025-11-26 03:46:25] 2025-11-26 08:45:33,113 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 03:46:25] 2025-11-26 08:45:33,113 | INFO     | collected zombie processes
[2025-11-26 03:46:25] 2025-11-26 08:45:33,113 | INFO     | will attempt to kill all subprocesses of pid=310215
[2025-11-26 03:46:25] 2025-11-26 08:45:33,660 | INFO     | process IDs to be killed: [310215] (in reverse order)
[2025-11-26 03:46:25] 2025-11-26 08:45:33,816 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 03:46:25] 2025-11-26 08:45:33,816 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 03:46:25] 2025-11-26 08:45:33,833 | INFO     | did not find any defunct processes belonging to 310215
[2025-11-26 03:46:25] 2025-11-26 08:45:33,851 | INFO     | did not find any defunct processes belonging to 310215
[2025-11-26 03:46:25] 2025-11-26 08:45:33,853 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 03:46:25] 2025-11-26 08:45:33,854 | INFO     | ready for new job
[2025-11-26 03:46:25] 2025-11-26 08:45:33,854 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 03:46:25] 2025-11-26 08:45:33,860 | INFO     | ***************************************
[2025-11-26 03:46:25] 2025-11-26 08:45:33,860 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 03:46:25] 2025-11-26 08:45:33,860 | INFO     | ***************************************
[2025-11-26 03:46:25] 2025-11-26 08:45:33,860 | INFO     | 
[2025-11-26 03:46:25] 2025-11-26 08:45:33,862 | INFO     | architecture information:
[2025-11-26 03:46:25] 2025-11-26 08:45:33,863 | INFO     | executing command: cat /etc/os-release
[2025-11-26 03:46:25] 2025-11-26 08:45:33,880 | INFO     | cat /etc/os-release:
[2025-11-26 03:46:25] NAME="CentOS Linux"
[2025-11-26 03:46:25] VERSION="7 (Core)"
[2025-11-26 03:46:25] ID="centos"
[2025-11-26 03:46:25] ID_LIKE="rhel fedora"
[2025-11-26 03:46:25] VERSION_ID="7"
[2025-11-26 03:46:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 03:46:25] ANSI_COLOR="0;31"
[2025-11-26 03:46:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 03:46:25] HOME_URL="https://www.centos.org/"
[2025-11-26 03:46:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 03:46:25] 
[2025-11-26 03:46:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 03:46:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 03:46:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 03:46:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 03:46:25] 
[2025-11-26 03:46:25] 2025-11-26 08:45:33,880 | INFO     | ***************************************
[2025-11-26 03:46:25] 2025-11-26 08:45:34,390 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-26 03:46:25] 2025-11-26 08:45:34,452 | INFO     | sufficient remaining disk space (73515663360 B)
[2025-11-26 03:46:25] 2025-11-26 08:45:34,452 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 03:46:25] 2025-11-26 08:45:34,453 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 03:46:25] 2025-11-26 08:45:34,454 | INFO     | update_server=False
[2025-11-26 03:46:25] 2025-11-26 08:45:34,454 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 03:46:25] 2025-11-26 08:45:34,454 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 03:46:25] 2025-11-26 08:45:34,454 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 03:46:25] 2025-11-26 08:45:34,675 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 03:46:25] 2025-11-26 08:45:34,676 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 03:46:25] 2025-11-26 08:45:34,676 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 03:46:25] 2025-11-26 08:45:34,676 | INFO     | will abort loop
[2025-11-26 03:46:25] 2025-11-26 08:45:34,827 | INFO     | all data control threads have been joined
[2025-11-26 03:46:25] 2025-11-26 08:45:35,459 | INFO     | [job] retrieve thread has finished
[2025-11-26 03:46:25] 2025-11-26 08:45:35,463 | INFO     | [payload] failed_post thread has finished
[2025-11-26 03:46:25] 2025-11-26 08:45:35,547 | INFO     | all payload control threads have been joined
[2025-11-26 03:46:25] 2025-11-26 08:45:35,591 | INFO     | [payload] validate_post thread has finished
[2025-11-26 03:46:25] 2025-11-26 08:45:35,595 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 03:46:25] 2025-11-26 08:45:35,620 | INFO     | [job] validate thread has finished
[2025-11-26 03:46:25] 2025-11-26 08:45:35,682 | INFO     | [job] job monitor thread has finished
[2025-11-26 03:46:25] 2025-11-26 08:45:35,761 | INFO     | [data] copytool_in thread has finished
[2025-11-26 03:46:25] 2025-11-26 08:45:35,778 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 03:46:25] 2025-11-26 08:45:35,833 | INFO     | [data] control thread has finished
[2025-11-26 03:46:25] 2025-11-26 08:45:35,966 | INFO     | all job control threads have been joined
[2025-11-26 03:46:25] 2025-11-26 08:45:36,145 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 03:46:25] 2025-11-26 08:45:36,463 | INFO     | [data] copytool_out thread has finished
[2025-11-26 03:46:25] 2025-11-26 08:45:36,552 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 03:46:25] 2025-11-26 08:45:36,553 | INFO     | [payload] control thread has finished
[2025-11-26 03:46:25] 2025-11-26 08:45:36,971 | INFO     | [job] control thread has finished
[2025-11-26 03:46:25] 2025-11-26 08:45:37,045 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 03:46:25] 2025-11-26 08:45:38,051 | INFO     | [job] queue monitor thread has finished
[2025-11-26 03:46:25] 2025-11-26 08:45:38,469 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 03:46:25] 2025-11-26 08:46:05,805 | INFO     | PID=289665 has CPU usage=8.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 03:46:25] 2025-11-26 08:46:05,805 | INFO     | .. there are 43 such processes running
[2025-11-26 03:46:25] 2025-11-26 08:46:05,806 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 03:46:25] 2025-11-26 08:46:05,806 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 03:46:25] 2025-11-26 08:46:05,806 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 03:46:25] 2025-11-26 08:46:16,264 [wrapper] supervise_pilot (15 min periods counter: 114)
[2025-11-26 03:46:25] 2025-11-26 08:46:18,709 | INFO     | [monitor] cgroup control has ended
[2025-11-26 03:46:25] 2025-11-26 08:46:19,322 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139663300695872)>', '<ExcThread(monitor, started 139662647609088)>']
[2025-11-26 03:46:25] 2025-11-26 08:46:19,891 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 03:46:25] 2025-11-26 08:46:19,891 | INFO     | [monitor] control thread has ended
[2025-11-26 03:46:25] 2025-11-26 08:46:24,355 | INFO     | all workflow threads have been joined
[2025-11-26 03:46:25] 2025-11-26 08:46:24,357 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 03:46:25] 2025-11-26 08:46:24,358 | INFO     | traces error code: 0
[2025-11-26 03:46:25] 2025-11-26 08:46:24,358 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 03:46:25] 2025-11-26 08:46:24,632 [wrapper] ==== pilot stdout END ====
[2025-11-26 03:46:25] 2025-11-26 08:46:24,681 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 03:46:25] 2025-11-26 08:46:24,726 [wrapper] pilotpid: 289665
[2025-11-26 03:46:25] 2025-11-26 08:46:24,755 [wrapper] Pilot exit status: 0
[2025-11-26 03:46:25] 2025-11-26 08:46:24,829 [wrapper] pandaids: 6894289754 6894289754
[2025-11-26 03:46:25] 2025-11-26 08:46:24,931 [wrapper] cleanup supervisor_pilot 1930179 289666
[2025-11-26 03:46:25] 2025-11-26 08:46:24,935 [wrapper] Test setup, not cleaning
[2025-11-26 03:46:25] 2025-11-26 08:46:24,938 [wrapper] apfmon messages muted
[2025-11-26 03:46:25] 2025-11-26 08:46:24,940 [wrapper] ==== wrapper stdout END ====
[2025-11-26 03:46:25] 2025-11-26 08:46:24,943 [wrapper] ==== wrapper stderr END ====
[2025-11-26 03:46:25]  *** Error codes and diagnostics ***
[2025-11-26 03:46:25]     "exeErrorCode": 0,
[2025-11-26 03:46:25]     "exeErrorDiag": "",
[2025-11-26 03:46:25]     "pilotErrorCode": 0,
[2025-11-26 03:46:25]     "pilotErrorDiag": "",
[2025-11-26 03:46:25]  *** Listing of results directory ***
[2025-11-26 03:46:25] total 1730148
[2025-11-26 03:46:25] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 03:46:25] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 06:32 pilot3.tar.gz
[2025-11-26 03:46:25] -rwx------. 1 boincer umatlas     36292 Nov 21 06:37 runpilot2-wrapper.sh
[2025-11-26 03:46:25] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 06:37 queuedata.json
[2025-11-26 03:46:25] -rw-r--r--. 1 boincer umatlas       100 Nov 24 08:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 03:46:25] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 08:31 run_atlas
[2025-11-26 03:46:25] -rw-r--r--. 1 boincer umatlas       105 Nov 24 08:31 job.xml
[2025-11-26 03:46:25] -rw-r--r--. 3 boincer umatlas 410735235 Nov 24 08:31 EVNT.47493127._002415.pool.root.1
[2025-11-26 03:46:25] -rw-r--r--. 3 boincer umatlas 410735235 Nov 24 08:31 ATLAS.root_0
[2025-11-26 03:46:25] -rw-r--r--. 2 boincer umatlas    590099 Nov 24 08:31 input.tar.gz
[2025-11-26 03:46:25] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 08:31 start_atlas.sh
[2025-11-26 03:46:25] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 08:31 shared
[2025-11-26 03:46:25] -rw-r--r--. 1 boincer umatlas         0 Nov 24 08:31 boinc_lockfile
[2025-11-26 03:46:25] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 23:30 pandaJob.out
[2025-11-26 03:46:25] -rw-------. 1 boincer umatlas        57 Nov 24 23:30 setup.sh.local
[2025-11-26 03:46:25] -rw-------. 1 boincer umatlas    991801 Nov 24 23:30 agis_schedconf.cvmfs.json
[2025-11-26 03:46:25] -rw-r--r--. 1 boincer umatlas       534 Nov 26 03:29 boinc_task_state.xml
[2025-11-26 03:46:25] -rw-------. 1 boincer umatlas 916461641 Nov 26 03:44 HITS.47533967._003866.pool.root.1
[2025-11-26 03:46:25] -rw-------. 1 boincer umatlas      1071 Nov 26 03:45 memory_monitor_summary.json
[2025-11-26 03:46:25] -rw-r--r--. 1 boincer umatlas      6660 Nov 26 03:45 init_data.xml
[2025-11-26 03:46:25] -rw-------. 1 boincer umatlas   1516240 Nov 26 03:45 agis_ddmendpoints.agis.ALL.json
[2025-11-26 03:46:25] -rw-------. 1 boincer umatlas   2905977 Nov 26 03:45 log.47533967._003866.job.log.tgz.1
[2025-11-26 03:46:25] -rw-------. 1 boincer umatlas      8649 Nov 26 03:45 heartbeat.json
[2025-11-26 03:46:25] -rw-------. 1 boincer umatlas        96 Nov 26 03:46 pilot_heartbeat.json
[2025-11-26 03:46:25] -rw-r--r--. 1 boincer umatlas        29 Nov 26 03:46 wrapper_checkpoint.txt
[2025-11-26 03:46:25] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 03:46 boinc_mmap_file
[2025-11-26 03:46:25] -rw-------. 1 boincer umatlas      5009 Nov 26 03:46 pilotlog.txt
[2025-11-26 03:46:25] -rw-------. 1 boincer umatlas  12000058 Nov 26 03:46 log.47533967._003866.job.log.1
[2025-11-26 03:46:25] -rw-------. 1 boincer umatlas       353 Nov 26 03:46 output.list
[2025-11-26 03:46:25] -rw-r--r--. 1 boincer umatlas       620 Nov 26 03:46 runtime_log
[2025-11-26 03:46:25] -rw-------. 1 boincer umatlas  14929920 Nov 26 03:46 result.tar.gz
[2025-11-26 03:46:25] -rw-r--r--. 1 boincer umatlas      9421 Nov 26 03:46 runtime_log.err
[2025-11-26 03:46:25] -rw-------. 1 boincer umatlas       791 Nov 26 03:46 oygKDmkdeg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmYMJKDmOXSC4m.diag
[2025-11-26 03:46:25] -rw-r--r--. 1 boincer umatlas     23454 Nov 26 03:46 stderr.txt
[2025-11-26 03:46:25] HITS file was successfully produced:
[2025-11-26 03:46:25] -rw-------. 1 boincer umatlas 916461641 Nov 26 03:44 shared/HITS.pool.root.1
[2025-11-26 03:46:25]  *** Contents of shared directory: ***
[2025-11-26 03:46:25] total 1311276
[2025-11-26 03:46:25] -rw-r--r--. 3 boincer umatlas 410735235 Nov 24 08:31 ATLAS.root_0
[2025-11-26 03:46:25] -rw-r--r--. 2 boincer umatlas    590099 Nov 24 08:31 input.tar.gz
[2025-11-26 03:46:25] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 08:31 start_atlas.sh
[2025-11-26 03:46:25] -rw-------. 1 boincer umatlas 916461641 Nov 26 03:44 HITS.pool.root.1
[2025-11-26 03:46:25] -rw-------. 1 boincer umatlas  14929920 Nov 26 03:46 result.tar.gz
03:46:27 (280361): run_atlas exited; CPU time 304350.806066
03:46:27 (280361): called boinc_finish(0)

</stderr_txt>
]]>

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