Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:17:11 (2267819): wrapper (7.7.26015): starting
00:17:11 (2267819): wrapper: running run_atlas (--nthreads 9)
[2025-11-23 00:17:11] Arguments: --nthreads 9
[2025-11-23 00:17:11] Threads: 9
[2025-11-23 00:17:11] Checking for CVMFS
[2025-11-23 00:17:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:17:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:17:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:17:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:17:14] 2.13.3.0 12085 23865 365916 153198 3 53 24734183 25181184 29749 16776704 0 134429915 99.598 137849299 22099 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 00:17:14] CVMFS is ok
[2025-11-23 00:17:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:17:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 00:17:14] Further information can be found at the LHC@home message board.
[2025-11-23 00:17:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:17:14] Checking for apptainer binary...
[2025-11-23 00:17:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:17:14] Running /usr/bin/apptainer --version
[2025-11-23 00:17:15] apptainer version 1.4.4-1.el9
[2025-11-23 00:17:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:17:36] c-16-38.aglt2.org
[2025-11-23 00:17:36] apptainer works
[2025-11-23 00:17:36] Set ATHENA_PROC_NUMBER=9
[2025-11-23 00:17:36] Set ATHENA_CORE_NUMBER=9
[2025-11-23 00:17:36] Starting ATLAS job with PandaID=6895346860
[2025-11-23 00:17:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 14:24:37]  *** The last 200 lines of the pilot log: ***
[2025-11-24 14:24:37] 2025-11-24 19:23:33,303 | INFO     | .. there are 48 such processes running
[2025-11-24 14:24:37] 2025-11-24 19:23:34,094 | INFO     | monitor loop #6771: job 0:6895346860 is in state 'finished'
[2025-11-24 14:24:37] 2025-11-24 19:23:34,095 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 14:24:37] 2025-11-24 19:23:34,347 | INFO     | time since job start (137075s) is within the limit (172800.0s)
[2025-11-24 14:24:37] 2025-11-24 19:23:36,353 | INFO     | time since job start (137077s) is within the limit (172800.0s)
[2025-11-24 14:24:37] 2025-11-24 19:23:36,675 | INFO     | monitor loop #6772: job 0:6895346860 is in state 'finished'
[2025-11-24 14:24:37] 2025-11-24 19:23:36,676 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 14:24:37] 2025-11-24 19:23:38,362 | INFO     | time since job start (137079s) is within the limit (172800.0s)
[2025-11-24 14:24:37] 2025-11-24 19:23:39,181 | INFO     | monitor loop #6773: job 0:6895346860 is in state 'finished'
[2025-11-24 14:24:37] 2025-11-24 19:23:39,182 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 14:24:37] 2025-11-24 19:23:40,412 | INFO     | time since job start (137081s) is within the limit (172800.0s)
[2025-11-24 14:24:37] 2025-11-24 19:23:40,915 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 14:24:37] 2025-11-24 19:23:40,961 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2799.7873541666663
[2025-11-24 14:24:37] 2025-11-24 19:23:41,094 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895346860/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 14:24:37] 2025-11-24 19:23:41,148 | INFO     | extracted standard info from prmon json
[2025-11-24 14:24:37] 2025-11-24 19:23:41,149 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 14:24:37] 2025-11-24 19:23:41,149 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 14:24:37] 2025-11-24 19:23:41,916 | INFO     | monitor loop #6774: job 0:6895346860 is in state 'finished'
[2025-11-24 14:24:37] 2025-11-24 19:23:41,917 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 14:24:37] 2025-11-24 19:23:41,972 | INFO     | fitting pss+swap vs Time
[2025-11-24 14:24:37] 2025-11-24 19:23:42,050 | INFO     | sum of square deviations: 3503768213257.9067
[2025-11-24 14:24:37] 2025-11-24 19:23:42,556 | INFO     | time since job start (137083s) is within the limit (172800.0s)
[2025-11-24 14:24:37] 2025-11-24 19:23:42,748 | INFO     | sum of deviations: 11250297959620.053
[2025-11-24 14:24:37] 2025-11-24 19:23:42,756 | INFO     | mean x: 1763943741.22549
[2025-11-24 14:24:37] 2025-11-24 19:23:42,757 | INFO     | mean y: 3101897.5414438504
[2025-11-24 14:24:37] 2025-11-24 19:23:42,757 | INFO     | intersect: -5660769530.28378
[2025-11-24 14:24:37] 2025-11-24 19:23:42,760 | INFO     | chi2: 25.678118585722615
[2025-11-24 14:24:37] 2025-11-24 19:23:42,771 | INFO     | sum of square deviations: 3480401375983.3477
[2025-11-24 14:24:37] 2025-11-24 19:23:43,179 | INFO     | sum of deviations: 12130756983862.71
[2025-11-24 14:24:37] 2025-11-24 19:23:43,179 | INFO     | mean x: 1763943588.7338097
[2025-11-24 14:24:37] 2025-11-24 19:23:43,180 | INFO     | mean y: 3107642.7981241625
[2025-11-24 14:24:37] 2025-11-24 19:23:43,180 | INFO     | intersect: -6145025488.003999
[2025-11-24 14:24:37] 2025-11-24 19:23:43,183 | INFO     | chi2: 21.9265719552395
[2025-11-24 14:24:37] 2025-11-24 19:23:43,183 | INFO     | current chi2=21.9265719552395 (change=14.609896819189187 %)
[2025-11-24 14:24:37] 2025-11-24 19:23:43,183 | INFO     | right removable region: 2238
[2025-11-24 14:24:37] 2025-11-24 19:23:43,187 | INFO     | sum of square deviations: 3480396276383.348
[2025-11-24 14:24:37] 2025-11-24 19:23:43,625 | INFO     | sum of deviations: 10287520792325.816
[2025-11-24 14:24:37] 2025-11-24 19:23:43,626 | INFO     | mean x: 1763943893.7338097
[2025-11-24 14:24:37] 2025-11-24 19:23:43,626 | INFO     | mean y: 3108179.3537293435
[2025-11-24 14:24:37] 2025-11-24 19:23:43,626 | INFO     | intersect: -5210841050.054069
[2025-11-24 14:24:37] 2025-11-24 19:23:43,642 | INFO     | chi2: 21.638554289038634
[2025-11-24 14:24:37] 2025-11-24 19:23:43,642 | INFO     | current chi2=21.638554289038634 (change=15.73154311597437 %)
[2025-11-24 14:24:37] 2025-11-24 19:23:43,642 | INFO     | left removable region: 10
[2025-11-24 14:24:37] 2025-11-24 19:23:43,658 | INFO     | sum of square deviations: 3429350385366.2407
[2025-11-24 14:24:37] 2025-11-24 19:23:44,064 | INFO     | sum of deviations: 10505766244930.293
[2025-11-24 14:24:37] 2025-11-24 19:23:44,064 | INFO     | mean x: 1763943863.2522442
[2025-11-24 14:24:37] 2025-11-24 19:23:44,064 | INFO     | mean y: 3120447.5884201075
[2025-11-24 14:24:37] 2025-11-24 19:23:44,065 | INFO     | intersect: -5400696548.069277
[2025-11-24 14:24:37] 2025-11-24 19:23:44,080 | INFO     | chi2: 14.352529521919854
[2025-11-24 14:24:37] 2025-11-24 19:23:44,080 | INFO     | current memory leak: 3.06 B/s (using 2228 data points, chi2=14.35)
[2025-11-24 14:24:37] 2025-11-24 19:23:44,082 | INFO     | could have reported an average CPU frequency of 2804 MHz (77 samples)
[2025-11-24 14:24:37] 2025-11-24 19:23:44,082 | INFO     | ..............................
[2025-11-24 14:24:37] 2025-11-24 19:23:44,082 | INFO     | . Timing measurements:
[2025-11-24 14:24:37] 2025-11-24 19:23:44,083 | INFO     | . get job = 0 s
[2025-11-24 14:24:37] 2025-11-24 19:23:44,083 | INFO     | . initial setup = 5 s
[2025-11-24 14:24:37] 2025-11-24 19:23:44,083 | INFO     | . payload setup = 55 s
[2025-11-24 14:24:37] 2025-11-24 19:23:44,083 | INFO     | . stage-in = 0 s
[2025-11-24 14:24:37] 2025-11-24 19:23:44,095 | INFO     | . payload execution = 136881 s
[2025-11-24 14:24:37] 2025-11-24 19:23:44,095 | INFO     | . stage-out = 12 s
[2025-11-24 14:24:37] 2025-11-24 19:23:44,096 | INFO     | . log creation = 3 s
[2025-11-24 14:24:37] 2025-11-24 19:23:44,096 | INFO     | ..............................
[2025-11-24 14:24:37] 2025-11-24 19:23:44,594 | INFO     | time since job start (137085s) is within the limit (172800.0s)
[2025-11-24 14:24:37] 2025-11-24 19:23:44,745 | INFO     | 
[2025-11-24 14:24:37] 2025-11-24 19:23:44,745 | INFO     | job summary report
[2025-11-24 14:24:37] 2025-11-24 19:23:44,745 | INFO     | --------------------------------------------------
[2025-11-24 14:24:37] 2025-11-24 19:23:44,745 | INFO     | PanDA job id: 6895346860
[2025-11-24 14:24:37] 2025-11-24 19:23:44,745 | INFO     | task id: 47556137
[2025-11-24 14:24:37] 2025-11-24 19:23:44,746 | INFO     | errors: (none)
[2025-11-24 14:24:37] 2025-11-24 19:23:44,746 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 14:24:37] 2025-11-24 19:23:44,746 | INFO     | pilot state: finished 
[2025-11-24 14:24:37] 2025-11-24 19:23:44,746 | INFO     | transexitcode: 0
[2025-11-24 14:24:37] 2025-11-24 19:23:44,746 | INFO     | exeerrorcode: 0
[2025-11-24 14:24:37] 2025-11-24 19:23:44,746 | INFO     | exeerrordiag: 
[2025-11-24 14:24:37] 2025-11-24 19:23:44,746 | INFO     | exitcode: 0
[2025-11-24 14:24:37] 2025-11-24 19:23:44,746 | INFO     | exitmsg: OK
[2025-11-24 14:24:37] 2025-11-24 19:23:44,747 | INFO     | cpuconsumptiontime: 322909 s
[2025-11-24 14:24:37] 2025-11-24 19:23:44,747 | INFO     | nevents: 1000
[2025-11-24 14:24:37] 2025-11-24 19:23:44,747 | INFO     | neventsw: 0
[2025-11-24 14:24:37] 2025-11-24 19:23:44,747 | INFO     | pid: 2297774
[2025-11-24 14:24:37] 2025-11-24 19:23:44,747 | INFO     | pgrp: 2297774
[2025-11-24 14:24:37] 2025-11-24 19:23:44,747 | INFO     | corecount: 9
[2025-11-24 14:24:37] 2025-11-24 19:23:44,747 | INFO     | event service: False
[2025-11-24 14:24:37] 2025-11-24 19:23:44,747 | INFO     | sizes: {0: 2298584, 2: 2298584, 3: 2298811, 14: 2298811, 25: 2298839, 37: 2298867, 47: 2299285, 50: 2299341, 136941: 2385419, 136942: 2385418, 136955: 2395259, 136
[2025-11-24 14:24:37] 2025-11-24 19:23:44,747 | INFO     | --------------------------------------------------
[2025-11-24 14:24:37] 2025-11-24 19:23:44,748 | INFO     | 
[2025-11-24 14:24:37] 2025-11-24 19:23:44,748 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 14:24:37] 2025-11-24 19:23:44,871 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 14:24:37] 2025-11-24 19:23:44,875 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 14:24:37] 2025-11-24 19:23:44,875 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 14:24:37] 2025-11-24 19:23:44,876 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 14:24:37] 2025-11-24 19:23:44,876 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 14:24:37] 2025-11-24 19:23:44,876 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 14:24:37] 2025-11-24 19:23:44,876 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 14:24:37] 2025-11-24 19:23:44,876 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 14:24:37] 2025-11-24 19:23:44,876 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 14:24:37] 2025-11-24 19:23:44,877 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 14:24:37] 2025-11-24 19:23:44,877 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 14:24:37] 2025-11-24 19:23:44,877 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 14:24:37] 2025-11-24 19:23:44,877 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 14:24:37] 2025-11-24 19:23:44,877 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 14:24:37] 2025-11-24 19:23:44,877 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 14:24:37] 2025-11-24 19:23:44,878 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 14:24:37] 2025-11-24 19:23:44,878 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 14:24:37] 2025-11-24 19:23:44,878 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 14:24:37] 2025-11-24 19:23:44,878 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 14:24:37] 2025-11-24 19:23:44,878 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 14:24:37] 2025-11-24 19:23:44,879 | INFO     | job 6895346860 has completed (purged errors)
[2025-11-24 14:24:37] 2025-11-24 19:23:44,879 | INFO     | overall cleanup function is called
[2025-11-24 14:24:37] 2025-11-24 19:23:45,907 | INFO     | --- collectZombieJob: --- 10, [2297774]
[2025-11-24 14:24:37] 2025-11-24 19:23:45,908 | INFO     | zombie collector waiting for pid 2297774
[2025-11-24 14:24:37] 2025-11-24 19:23:45,908 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 14:24:37] 2025-11-24 19:23:45,908 | INFO     | collected zombie processes
[2025-11-24 14:24:37] 2025-11-24 19:23:45,908 | INFO     | will attempt to kill all subprocesses of pid=2297774
[2025-11-24 14:24:37] 2025-11-24 19:23:49,275 | INFO     | process IDs to be killed: [2297774] (in reverse order)
[2025-11-24 14:24:37] 2025-11-24 19:23:50,373 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 14:24:37] 2025-11-24 19:23:50,374 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 14:24:37] 2025-11-24 19:23:50,622 | INFO     | did not find any defunct processes belonging to 2297774
[2025-11-24 14:24:37] 2025-11-24 19:23:50,934 | INFO     | did not find any defunct processes belonging to 2297774
[2025-11-24 14:24:37] 2025-11-24 19:23:50,950 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 14:24:37] 2025-11-24 19:23:50,950 | INFO     | ready for new job
[2025-11-24 14:24:37] 2025-11-24 19:23:50,950 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 14:24:37] 2025-11-24 19:23:50,967 | INFO     | ***************************************
[2025-11-24 14:24:37] 2025-11-24 19:23:50,967 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 14:24:37] 2025-11-24 19:23:50,967 | INFO     | ***************************************
[2025-11-24 14:24:37] 2025-11-24 19:23:50,967 | INFO     | 
[2025-11-24 14:24:37] 2025-11-24 19:23:50,979 | INFO     | architecture information:
[2025-11-24 14:24:37] 2025-11-24 19:23:50,983 | INFO     | executing command: cat /etc/os-release
[2025-11-24 14:24:37] 2025-11-24 19:23:51,116 | INFO     | cat /etc/os-release:
[2025-11-24 14:24:37] NAME="CentOS Linux"
[2025-11-24 14:24:37] VERSION="7 (Core)"
[2025-11-24 14:24:37] ID="centos"
[2025-11-24 14:24:37] ID_LIKE="rhel fedora"
[2025-11-24 14:24:37] VERSION_ID="7"
[2025-11-24 14:24:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 14:24:37] ANSI_COLOR="0;31"
[2025-11-24 14:24:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 14:24:37] HOME_URL="https://www.centos.org/"
[2025-11-24 14:24:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 14:24:37] 
[2025-11-24 14:24:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 14:24:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 14:24:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 14:24:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 14:24:37] 
[2025-11-24 14:24:37] 2025-11-24 19:23:51,116 | INFO     | ***************************************
[2025-11-24 14:24:37] 2025-11-24 19:23:51,651 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 14:24:37] 2025-11-24 19:23:51,715 | INFO     | sufficient remaining disk space (59430141952 B)
[2025-11-24 14:24:37] 2025-11-24 19:23:51,715 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 14:24:37] 2025-11-24 19:23:51,715 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 14:24:37] 2025-11-24 19:23:51,716 | INFO     | update_server=False
[2025-11-24 14:24:37] 2025-11-24 19:23:51,716 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 14:24:37] 2025-11-24 19:23:51,867 | INFO     | all job control threads have been joined
[2025-11-24 14:24:37] 2025-11-24 19:23:52,115 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 14:24:37] 2025-11-24 19:23:52,123 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 14:24:37] 2025-11-24 19:23:52,124 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 14:24:37] 2025-11-24 19:23:52,124 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 14:24:37] 2025-11-24 19:23:52,124 | INFO     | will abort loop
[2025-11-24 14:24:37] 2025-11-24 19:23:52,395 | INFO     | all payload control threads have been joined
[2025-11-24 14:24:37] 2025-11-24 19:23:52,723 | INFO     | [job] retrieve thread has finished
[2025-11-24 14:24:37] 2025-11-24 19:23:52,788 | INFO     | [payload] failed_post thread has finished
[2025-11-24 14:24:37] 2025-11-24 19:23:52,812 | INFO     | all data control threads have been joined
[2025-11-24 14:24:37] 2025-11-24 19:23:52,858 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 14:24:37] 2025-11-24 19:23:52,873 | INFO     | [job] control thread has finished
[2025-11-24 14:24:37] 2025-11-24 19:23:53,132 | INFO     | [job] job monitor thread has finished
[2025-11-24 14:24:37] 2025-11-24 19:23:53,232 | INFO     | [data] copytool_in thread has finished
[2025-11-24 14:24:37] 2025-11-24 19:23:53,400 | INFO     | [payload] control thread has finished
[2025-11-24 14:24:37] 2025-11-24 19:23:53,472 | INFO     | [payload] validate_post thread has finished
[2025-11-24 14:24:37] 2025-11-24 19:23:53,559 | INFO     | [job] validate thread has finished
[2025-11-24 14:24:37] 2025-11-24 19:23:53,684 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 14:24:37] 2025-11-24 19:23:53,818 | INFO     | [data] control thread has finished
[2025-11-24 14:24:37] 2025-11-24 19:23:53,852 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 14:24:37] 2025-11-24 19:23:53,853 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 14:24:37] 2025-11-24 19:23:53,858 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 14:24:37] 2025-11-24 19:23:54,122 | INFO     | [data] copytool_out thread has finished
[2025-11-24 14:24:37] 2025-11-24 19:23:54,195 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 14:24:37] 2025-11-24 19:23:54,872 | INFO     | [job] queue monitor thread has finished
[2025-11-24 14:24:37] 2025-11-24 19:23:57,747 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 14:24:37] 2025-11-24 19:24:22,056 | INFO     | PID=2277902 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 14:24:37] 2025-11-24 19:24:22,057 | INFO     | .. there are 48 such processes running
[2025-11-24 14:24:37] 2025-11-24 19:24:22,057 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 14:24:37] 2025-11-24 19:24:22,057 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 14:24:37] 2025-11-24 19:24:22,057 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 14:24:37] 2025-11-24 19:24:28,163 | INFO     | [monitor] cgroup control has ended
[2025-11-24 14:24:37] 2025-11-24 19:24:30,105 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139800191428416)>', '<ExcThread(monitor, started 139799541298944)>']
[2025-11-24 14:24:37] 2025-11-24 19:24:31,109 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 14:24:37] 2025-11-24 19:24:31,109 | INFO     | [monitor] control thread has ended
[2025-11-24 14:24:37] 2025-11-24 19:24:35,133 | INFO     | all workflow threads have been joined
[2025-11-24 14:24:37] 2025-11-24 19:24:35,134 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 14:24:37] 2025-11-24 19:24:35,134 | INFO     | traces error code: 0
[2025-11-24 14:24:37] 2025-11-24 19:24:35,134 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 14:24:37] 2025-11-24 19:24:37,065 [wrapper] ==== pilot stdout END ====
[2025-11-24 14:24:37] 2025-11-24 19:24:37,080 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 14:24:37] 2025-11-24 19:24:37,093 [wrapper] pilotpid: 2277902
[2025-11-24 14:24:37] 2025-11-24 19:24:37,096 [wrapper] Pilot exit status: 0
[2025-11-24 14:24:37] 2025-11-24 19:24:37,110 [wrapper] pandaids: 6895346860
[2025-11-24 14:24:37] 2025-11-24 19:24:37,226 [wrapper] cleanup supervisor_pilot 2631100 2277903
[2025-11-24 14:24:37] 2025-11-24 19:24:37,248 [wrapper] Test setup, not cleaning
[2025-11-24 14:24:37] 2025-11-24 19:24:37,263 [wrapper] apfmon messages muted
[2025-11-24 14:24:37] 2025-11-24 19:24:37,287 [wrapper] ==== wrapper stdout END ====
[2025-11-24 14:24:37] 2025-11-24 19:24:37,366 [wrapper] ==== wrapper stderr END ====
[2025-11-24 14:24:37]  *** Error codes and diagnostics ***
[2025-11-24 14:24:37]     "exeErrorCode": 0,
[2025-11-24 14:24:37]     "exeErrorDiag": "",
[2025-11-24 14:24:37]     "pilotErrorCode": 0,
[2025-11-24 14:24:37]     "pilotErrorDiag": "",
[2025-11-24 14:24:37]  *** Listing of results directory ***
[2025-11-24 14:24:37] total 1341872
[2025-11-24 14:24:37] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 13:28 pilot3.tar.gz
[2025-11-24 14:24:37] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 13:34 queuedata.json
[2025-11-24 14:24:37] -rwx------. 1 boincer umatlas     36292 Nov 22 13:36 runpilot2-wrapper.sh
[2025-11-24 14:24:37] -rw-r--r--. 1 boincer umatlas       100 Nov 23 00:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 14:24:37] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 00:17 run_atlas
[2025-11-24 14:24:37] -rw-r--r--. 1 boincer umatlas       105 Nov 23 00:17 job.xml
[2025-11-24 14:24:37] -rw-r--r--. 2 boincer umatlas 410498425 Nov 23 00:17 EVNT.47483658._000463.pool.root.1
[2025-11-24 14:24:37] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:17 start_atlas.sh
[2025-11-24 14:24:37] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 00:17 shared
[2025-11-24 14:24:37] -rw-r--r--. 2 boincer umatlas    590103 Nov 23 00:17 input.tar.gz
[2025-11-24 14:24:37] -rw-r--r--. 1 boincer umatlas         0 Nov 23 00:17 boinc_lockfile
[2025-11-24 14:24:37] -rw-r--r--. 1 boincer umatlas      2784 Nov 23 00:17 pandaJob.out
[2025-11-24 14:24:37] -rw-------. 1 boincer umatlas        57 Nov 23 00:17 setup.sh.local
[2025-11-24 14:24:37] -rw-------. 1 boincer umatlas    989784 Nov 23 00:18 agis_schedconf.cvmfs.json
[2025-11-24 14:24:37] drwx------. 5 boincer umatlas      4096 Nov 23 00:18 pilot3
[2025-11-24 14:24:37] -rw-r--r--. 1 boincer umatlas       533 Nov 24 13:53 boinc_task_state.xml
[2025-11-24 14:24:37] -rw-------. 1 boincer umatlas 922753247 Nov 24 14:20 HITS.47556137._004587.pool.root.1
[2025-11-24 14:24:37] -rw-r--r--. 1 boincer umatlas      6614 Nov 24 14:22 init_data.xml
[2025-11-24 14:24:37] -rw-------. 1 boincer umatlas      1060 Nov 24 14:22 memory_monitor_summary.json
[2025-11-24 14:24:37] -rw-------. 1 boincer umatlas   1516227 Nov 24 14:22 agis_ddmendpoints.agis.ALL.json
[2025-11-24 14:24:37] -rw-------. 1 boincer umatlas   3050830 Nov 24 14:23 log.47556137._004587.job.log.tgz.1
[2025-11-24 14:24:37] -rw-------. 1 boincer umatlas        95 Nov 24 14:23 pilot_heartbeat.json
[2025-11-24 14:24:37] -rw-------. 1 boincer umatlas      8624 Nov 24 14:23 heartbeat.json
[2025-11-24 14:24:37] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 14:24 boinc_mmap_file
[2025-11-24 14:24:37] -rw-------. 1 boincer umatlas      5010 Nov 24 14:24 pilotlog.txt
[2025-11-24 14:24:37] -rw-r--r--. 1 boincer umatlas        29 Nov 24 14:24 wrapper_checkpoint.txt
[2025-11-24 14:24:37] -rw-------. 1 boincer umatlas  15404533 Nov 24 14:24 log.47556137._004587.job.log.1
[2025-11-24 14:24:37] -rw-------. 1 boincer umatlas       353 Nov 24 14:24 output.list
[2025-11-24 14:24:37] -rw-r--r--. 1 boincer umatlas       620 Nov 24 14:24 runtime_log
[2025-11-24 14:24:37] -rw-------. 1 boincer umatlas  18472960 Nov 24 14:24 result.tar.gz
[2025-11-24 14:24:37] -rw-r--r--. 1 boincer umatlas      9339 Nov 24 14:24 runtime_log.err
[2025-11-24 14:24:37] -rw-------. 1 boincer umatlas       662 Nov 24 14:24 QoYNDmOe7g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmALKKDm922n3n.diag
[2025-11-24 14:24:37] -rw-r--r--. 1 boincer umatlas     21775 Nov 24 14:24 stderr.txt
[2025-11-24 14:24:38] HITS file was successfully produced:
[2025-11-24 14:24:38] -rw-------. 1 boincer umatlas 922753247 Nov 24 14:20 shared/HITS.pool.root.1
[2025-11-24 14:24:38]  *** Contents of shared directory: ***
[2025-11-24 14:24:38] total 1320652
[2025-11-24 14:24:38] -rw-r--r--. 2 boincer umatlas 410498425 Nov 23 00:17 ATLAS.root_0
[2025-11-24 14:24:38] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:17 start_atlas.sh
[2025-11-24 14:24:38] -rw-r--r--. 2 boincer umatlas    590103 Nov 23 00:17 input.tar.gz
[2025-11-24 14:24:38] -rw-------. 1 boincer umatlas 922753247 Nov 24 14:20 HITS.pool.root.1
[2025-11-24 14:24:38] -rw-------. 1 boincer umatlas  18472960 Nov 24 14:24 result.tar.gz
14:24:39 (2267819): run_atlas exited; CPU time 327989.267937
14:24:39 (2267819): called boinc_finish(0)

</stderr_txt>
]]>

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