Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:44 (1910852): wrapper (7.7.26015): starting
00:04:44 (1910852): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 00:04:44] Arguments: --nthreads 12
[2025-11-23 00:04:44] Threads: 12
[2025-11-23 00:04:44] Checking for CVMFS
[2025-11-23 00:04:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:04:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:04:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:04:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:04:46] 2.13.2.0 8445 30575 223380 153197 3 342 27120939 40960000 17467 16776704 0 60057755 99.783 31402380 36947 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 00:04:46] CVMFS is ok
[2025-11-23 00:04:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:04:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 00:04:46] Further information can be found at the LHC@home message board.
[2025-11-23 00:04:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:04:46] Checking for apptainer binary...
[2025-11-23 00:04:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:04:46] Running /usr/bin/apptainer --version
[2025-11-23 00:04:47] apptainer version 1.4.4-1.el9
[2025-11-23 00:04:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:04:47] c-212-2.aglt2.org
[2025-11-23 00:04:47] apptainer works
[2025-11-23 00:04:47] Set ATHENA_PROC_NUMBER=12
[2025-11-23 00:04:47] Set ATHENA_CORE_NUMBER=12
[2025-11-23 00:04:47] Starting ATLAS job with PandaID=6895329126
[2025-11-23 00:04:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 13:36:31]  *** The last 200 lines of the pilot log: ***
[2025-11-23 13:36:31] 2025-11-23 18:35:29,387 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 13:36:31] 2025-11-23 18:35:29,433 | INFO     | fitting pss+swap vs Time
[2025-11-23 13:36:31] 2025-11-23 18:35:29,434 | INFO     | sum of square deviations: 155765936498.36993
[2025-11-23 13:36:31] 2025-11-23 18:35:29,446 | INFO     | sum of deviations: 2013419249348.1755
[2025-11-23 13:36:31] 2025-11-23 18:35:29,446 | INFO     | mean x: 1763898689.045283
[2025-11-23 13:36:31] 2025-11-23 18:35:29,446 | INFO     | mean y: 3382689.300628931
[2025-11-23 13:36:31] 2025-11-23 18:35:29,447 | INFO     | intersect: -22796644417.145397
[2025-11-23 13:36:31] 2025-11-23 18:35:29,447 | INFO     | chi2: 12.667871587122743
[2025-11-23 13:36:31] 2025-11-23 18:35:29,448 | INFO     | sum of square deviations: 152845904952.78992
[2025-11-23 13:36:31] 2025-11-23 18:35:29,460 | INFO     | sum of deviations: 2363914728697.129
[2025-11-23 13:36:31] 2025-11-23 18:35:29,461 | INFO     | mean x: 1763898536.5772152
[2025-11-23 13:36:31] 2025-11-23 18:35:29,461 | INFO     | mean y: 3400987.4405063293
[2025-11-23 13:36:31] 2025-11-23 18:35:29,461 | INFO     | intersect: -27277053348.775455
[2025-11-23 13:36:31] 2025-11-23 18:35:29,462 | INFO     | chi2: 8.850218956228044
[2025-11-23 13:36:31] 2025-11-23 18:35:29,462 | INFO     | current chi2=8.850218956228044 (change=30.136496132274132 %)
[2025-11-23 13:36:31] 2025-11-23 18:35:29,462 | INFO     | sum of square deviations: 149962474104.22412
[2025-11-23 13:36:31] 2025-11-23 18:35:29,475 | INFO     | sum of deviations: 2516685126465.855
[2025-11-23 13:36:31] 2025-11-23 18:35:29,475 | INFO     | mean x: 1763898384.1057324
[2025-11-23 13:36:31] 2025-11-23 18:35:29,475 | INFO     | mean y: 3409044.676433121
[2025-11-23 13:36:31] 2025-11-23 18:35:29,475 | INFO     | intersect: -29598508731.0387
[2025-11-23 13:36:31] 2025-11-23 18:35:29,476 | INFO     | chi2: 7.603655625090284
[2025-11-23 13:36:31] 2025-11-23 18:35:29,476 | INFO     | current chi2=7.603655625090284 (change=14.085112891591603 %)
[2025-11-23 13:36:31] 2025-11-23 18:35:29,476 | INFO     | right removable region: 784
[2025-11-23 13:36:31] 2025-11-23 18:35:29,477 | INFO     | sum of square deviations: 152843458242.78998
[2025-11-23 13:36:31] 2025-11-23 18:35:29,489 | INFO     | sum of deviations: 1647392589229.0486
[2025-11-23 13:36:31] 2025-11-23 18:35:29,489 | INFO     | mean x: 1763898841.5772152
[2025-11-23 13:36:31] 2025-11-23 18:35:29,489 | INFO     | mean y: 3401787.458227848
[2025-11-23 13:36:31] 2025-11-23 18:35:29,489 | INFO     | intersect: -19008428441.79585
[2025-11-23 13:36:31] 2025-11-23 18:35:29,490 | INFO     | chi2: 8.643057623756196
[2025-11-23 13:36:31] 2025-11-23 18:35:29,490 | INFO     | current chi2=8.643057623756196 (change=31.771824774872893 %)
[2025-11-23 13:36:31] 2025-11-23 18:35:29,491 | INFO     | sum of square deviations: 149957724860.57846
[2025-11-23 13:36:31] 2025-11-23 18:35:29,503 | INFO     | sum of deviations: 1336882947780.0635
[2025-11-23 13:36:31] 2025-11-23 18:35:29,503 | INFO     | mean x: 1763898994.109554
[2025-11-23 13:36:31] 2025-11-23 18:35:29,503 | INFO     | mean y: 3418193.3248407645
[2025-11-23 13:36:31] 2025-11-23 18:35:29,504 | INFO     | intersect: -15721856973.552435
[2025-11-23 13:36:31] 2025-11-23 18:35:29,504 | INFO     | chi2: 5.887740289242818
[2025-11-23 13:36:31] 2025-11-23 18:35:29,504 | INFO     | current chi2=5.887740289242818 (change=31.878965228001583 %)
[2025-11-23 13:36:31] 2025-11-23 18:35:29,505 | INFO     | sum of square deviations: 147108934091.66144
[2025-11-23 13:36:31] 2025-11-23 18:35:29,518 | INFO     | sum of deviations: 1207830673923.4
[2025-11-23 13:36:31] 2025-11-23 18:35:29,518 | INFO     | mean x: 1763899146.6307693
[2025-11-23 13:36:31] 2025-11-23 18:35:29,518 | INFO     | mean y: 3425093.05
[2025-11-23 13:36:31] 2025-11-23 18:35:29,518 | INFO     | intersect: -14478982166.324701
[2025-11-23 13:36:31] 2025-11-23 18:35:29,519 | INFO     | chi2: 5.407355542468419
[2025-11-23 13:36:31] 2025-11-23 18:35:29,519 | INFO     | current chi2=5.407355542468419 (change=8.159068219297724 %)
[2025-11-23 13:36:31] 2025-11-23 18:35:29,519 | INFO     | left removable region: 30
[2025-11-23 13:36:31] 2025-11-23 18:35:29,520 | INFO     | sum of square deviations: 132880116031.41745
[2025-11-23 13:36:31] 2025-11-23 18:35:29,531 | INFO     | sum of deviations: 1520805944077.795
[2025-11-23 13:36:31] 2025-11-23 18:35:29,531 | INFO     | mean x: 1763899268.7334218
[2025-11-23 13:36:31] 2025-11-23 18:35:29,531 | INFO     | mean y: 3462441.083554377
[2025-11-23 13:36:31] 2025-11-23 18:35:29,532 | INFO     | intersect: -20184271982.703495
[2025-11-23 13:36:31] 2025-11-23 18:35:29,532 | INFO     | chi2: 0.07735337973761654
[2025-11-23 13:36:31] 2025-11-23 18:35:29,532 | INFO     | current memory leak: 11.44 B/s (using 754 data points, chi2=0.08)
[2025-11-23 13:36:31] 2025-11-23 18:35:29,533 | INFO     | could have reported an average CPU frequency of 3110 MHz (30 samples)
[2025-11-23 13:36:31] 2025-11-23 18:35:29,533 | INFO     | ..............................
[2025-11-23 13:36:31] 2025-11-23 18:35:29,534 | INFO     | . Timing measurements:
[2025-11-23 13:36:31] 2025-11-23 18:35:29,534 | INFO     | . get job = 0 s
[2025-11-23 13:36:31] 2025-11-23 18:35:29,534 | INFO     | . initial setup = 5 s
[2025-11-23 13:36:31] 2025-11-23 18:35:29,534 | INFO     | . payload setup = 29 s
[2025-11-23 13:36:31] 2025-11-23 18:35:29,534 | INFO     | . stage-in = 0 s
[2025-11-23 13:36:31] 2025-11-23 18:35:29,534 | INFO     | . payload execution = 48466 s
[2025-11-23 13:36:31] 2025-11-23 18:35:29,534 | INFO     | . stage-out = 6 s
[2025-11-23 13:36:31] 2025-11-23 18:35:29,534 | INFO     | . log creation = 2 s
[2025-11-23 13:36:31] 2025-11-23 18:35:29,534 | INFO     | ..............................
[2025-11-23 13:36:31] 2025-11-23 18:35:29,622 | INFO     | 
[2025-11-23 13:36:31] 2025-11-23 18:35:29,622 | INFO     | job summary report
[2025-11-23 13:36:31] 2025-11-23 18:35:29,622 | INFO     | --------------------------------------------------
[2025-11-23 13:36:31] 2025-11-23 18:35:29,622 | INFO     | PanDA job id: 6895329126
[2025-11-23 13:36:31] 2025-11-23 18:35:29,622 | INFO     | task id: 47556137
[2025-11-23 13:36:31] 2025-11-23 18:35:29,622 | INFO     | errors: (none)
[2025-11-23 13:36:31] 2025-11-23 18:35:29,622 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 13:36:31] 2025-11-23 18:35:29,622 | INFO     | pilot state: finished 
[2025-11-23 13:36:31] 2025-11-23 18:35:29,622 | INFO     | transexitcode: 0
[2025-11-23 13:36:31] 2025-11-23 18:35:29,622 | INFO     | exeerrorcode: 0
[2025-11-23 13:36:31] 2025-11-23 18:35:29,622 | INFO     | exeerrordiag: 
[2025-11-23 13:36:31] 2025-11-23 18:35:29,622 | INFO     | exitcode: 0
[2025-11-23 13:36:31] 2025-11-23 18:35:29,622 | INFO     | exitmsg: OK
[2025-11-23 13:36:31] 2025-11-23 18:35:29,623 | INFO     | cpuconsumptiontime: 196699 s
[2025-11-23 13:36:31] 2025-11-23 18:35:29,623 | INFO     | nevents: 1000
[2025-11-23 13:36:31] 2025-11-23 18:35:29,623 | INFO     | neventsw: 0
[2025-11-23 13:36:31] 2025-11-23 18:35:29,623 | INFO     | pid: 1955584
[2025-11-23 13:36:31] 2025-11-23 18:35:29,623 | INFO     | pgrp: 1955584
[2025-11-23 13:36:31] 2025-11-23 18:35:29,623 | INFO     | corecount: 12
[2025-11-23 13:36:31] 2025-11-23 18:35:29,623 | INFO     | event service: False
[2025-11-23 13:36:31] 2025-11-23 18:35:29,623 | INFO     | sizes: {0: 2297979, 1: 2298664, 2: 2298863, 13: 2298863, 24: 2298919, 31: 2299209, 34: 2299365, 48500: 2346303, 48501: 2346302, 48509: 2355436, 48519: 2355626}
[2025-11-23 13:36:31] 2025-11-23 18:35:29,623 | INFO     | --------------------------------------------------
[2025-11-23 13:36:31] 2025-11-23 18:35:29,623 | INFO     | 
[2025-11-23 13:36:31] 2025-11-23 18:35:29,623 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-23 13:36:31] 2025-11-23 18:35:29,718 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 13:36:31] 2025-11-23 18:35:29,718 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 13:36:31] 2025-11-23 18:35:29,718 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 13:36:31] 2025-11-23 18:35:29,718 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 13:36:31] 2025-11-23 18:35:29,718 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 13:36:31] 2025-11-23 18:35:29,718 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 13:36:31] 2025-11-23 18:35:29,719 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 13:36:31] 2025-11-23 18:35:29,723 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 13:36:31] 2025-11-23 18:35:29,723 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 13:36:31] 2025-11-23 18:35:29,723 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 13:36:31] 2025-11-23 18:35:29,723 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 13:36:31] 2025-11-23 18:35:29,723 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 13:36:31] 2025-11-23 18:35:29,723 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 13:36:31] 2025-11-23 18:35:29,723 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 13:36:31] 2025-11-23 18:35:29,723 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 13:36:31] 2025-11-23 18:35:29,723 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 13:36:31] 2025-11-23 18:35:29,723 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 13:36:31] 2025-11-23 18:35:29,723 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 13:36:31] 2025-11-23 18:35:29,723 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 13:36:31] 2025-11-23 18:35:29,723 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 13:36:31] 2025-11-23 18:35:29,724 | INFO     | job 6895329126 has completed (purged errors)
[2025-11-23 13:36:31] 2025-11-23 18:35:29,724 | INFO     | overall cleanup function is called
[2025-11-23 13:36:31] 2025-11-23 18:35:30,771 | INFO     | --- collectZombieJob: --- 10, [1955584]
[2025-11-23 13:36:31] 2025-11-23 18:35:30,771 | INFO     | zombie collector waiting for pid 1955584
[2025-11-23 13:36:31] 2025-11-23 18:35:30,771 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 13:36:31] 2025-11-23 18:35:30,771 | INFO     | collected zombie processes
[2025-11-23 13:36:31] 2025-11-23 18:35:30,771 | INFO     | will attempt to kill all subprocesses of pid=1955584
[2025-11-23 13:36:31] 2025-11-23 18:35:31,642 | INFO     | process IDs to be killed: [1955584] (in reverse order)
[2025-11-23 13:36:31] 2025-11-23 18:35:31,770 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 13:36:31] 2025-11-23 18:35:31,770 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 13:36:31] 2025-11-23 18:35:31,801 | INFO     | did not find any defunct processes belonging to 1955584
[2025-11-23 13:36:31] 2025-11-23 18:35:31,841 | INFO     | did not find any defunct processes belonging to 1955584
[2025-11-23 13:36:31] 2025-11-23 18:35:31,850 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 13:36:31] 2025-11-23 18:35:31,850 | INFO     | ready for new job
[2025-11-23 13:36:31] 2025-11-23 18:35:31,850 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 13:36:31] 2025-11-23 18:35:31,854 | INFO     | ***************************************
[2025-11-23 13:36:31] 2025-11-23 18:35:31,854 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 13:36:31] 2025-11-23 18:35:31,854 | INFO     | ***************************************
[2025-11-23 13:36:31] 2025-11-23 18:35:31,854 | INFO     | 
[2025-11-23 13:36:31] 2025-11-23 18:35:31,867 | INFO     | architecture information:
[2025-11-23 13:36:31] 2025-11-23 18:35:31,871 | INFO     | executing command: cat /etc/os-release
[2025-11-23 13:36:31] 2025-11-23 18:35:31,887 | INFO     | cat /etc/os-release:
[2025-11-23 13:36:31] NAME="CentOS Linux"
[2025-11-23 13:36:31] VERSION="7 (Core)"
[2025-11-23 13:36:31] ID="centos"
[2025-11-23 13:36:31] ID_LIKE="rhel fedora"
[2025-11-23 13:36:31] VERSION_ID="7"
[2025-11-23 13:36:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 13:36:31] ANSI_COLOR="0;31"
[2025-11-23 13:36:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 13:36:31] HOME_URL="https://www.centos.org/"
[2025-11-23 13:36:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 13:36:31] 
[2025-11-23 13:36:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 13:36:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 13:36:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 13:36:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 13:36:31] 
[2025-11-23 13:36:31] 2025-11-23 18:35:31,887 | INFO     | ***************************************
[2025-11-23 13:36:31] 2025-11-23 18:35:32,391 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-23 13:36:31] 2025-11-23 18:35:32,408 | INFO     | sufficient remaining disk space (121704022016 B)
[2025-11-23 13:36:31] 2025-11-23 18:35:32,409 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 13:36:31] 2025-11-23 18:35:32,409 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 13:36:31] 2025-11-23 18:35:32,409 | INFO     | update_server=False
[2025-11-23 13:36:31] 2025-11-23 18:35:32,409 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 13:36:31] 2025-11-23 18:35:32,639 | INFO     | all payload control threads have been joined
[2025-11-23 13:36:31] 2025-11-23 18:35:32,655 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 13:36:31] 2025-11-23 18:35:32,696 | INFO     | all job control threads have been joined
[2025-11-23 13:36:31] 2025-11-23 18:35:32,787 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 13:36:31] 2025-11-23 18:35:32,787 | INFO     | aborting loop
[2025-11-23 13:36:31] 2025-11-23 18:35:32,926 | INFO     | all data control threads have been joined
[2025-11-23 13:36:31] 2025-11-23 18:35:33,430 | INFO     | [job] retrieve thread has finished
[2025-11-23 13:36:31] 2025-11-23 18:35:33,645 | INFO     | [payload] control thread has finished
[2025-11-23 13:36:31] 2025-11-23 18:35:33,689 | INFO     | [payload] validate_post thread has finished
[2025-11-23 13:36:31] 2025-11-23 18:35:33,702 | INFO     | [job] control thread has finished
[2025-11-23 13:36:31] 2025-11-23 18:35:33,794 | INFO     | [job] job monitor thread has finished
[2025-11-23 13:36:31] 2025-11-23 18:35:33,874 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 13:36:31] 2025-11-23 18:35:33,932 | INFO     | [data] control thread has finished
[2025-11-23 13:36:31] 2025-11-23 18:35:34,133 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 13:36:31] 2025-11-23 18:35:34,393 | INFO     | [data] copytool_in thread has finished
[2025-11-23 13:36:31] 2025-11-23 18:35:34,659 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 13:36:31] 2025-11-23 18:35:34,672 | INFO     | [data] copytool_out thread has finished
[2025-11-23 13:36:31] 2025-11-23 18:35:34,713 | INFO     | [payload] failed_post thread has finished
[2025-11-23 13:36:31] 2025-11-23 18:35:34,763 | INFO     | [job] validate thread has finished
[2025-11-23 13:36:31] 2025-11-23 18:35:34,799 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 13:36:31] 2025-11-23 18:35:34,824 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 13:36:31] 2025-11-23 18:35:34,912 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 13:36:31] 2025-11-23 18:35:35,664 | INFO     | [job] queue monitor thread has finished
[2025-11-23 13:36:31] 2025-11-23 18:35:38,817 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 13:36:31] 2025-11-23 18:35:51,555 [wrapper] supervise_pilot (15 min periods counter: 55)
[2025-11-23 13:36:31] 2025-11-23 18:36:03,326 | INFO     | PID=1920913 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 13:36:31] 2025-11-23 18:36:03,326 | INFO     | .. there are 18 such processes running
[2025-11-23 13:36:31] 2025-11-23 18:36:03,326 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 13:36:31] 2025-11-23 18:36:03,327 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 13:36:31] 2025-11-23 18:36:03,327 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 13:36:31] 2025-11-23 18:36:24,253 | INFO     | [monitor] cgroup control has ended
[2025-11-23 13:36:31] 2025-11-23 18:36:25,131 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140361324570432)>', '<ExcThread(monitor, started 140360462362368)>']
[2025-11-23 13:36:31] 2025-11-23 18:36:25,585 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 13:36:31] 2025-11-23 18:36:25,587 | INFO     | [monitor] control thread has ended
[2025-11-23 13:36:31] 2025-11-23 18:36:30,157 | INFO     | all workflow threads have been joined
[2025-11-23 13:36:31] 2025-11-23 18:36:30,157 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 13:36:31] 2025-11-23 18:36:30,158 | INFO     | traces error code: 0
[2025-11-23 13:36:31] 2025-11-23 18:36:30,158 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 13:36:31] 2025-11-23 18:36:30,695 [wrapper] ==== pilot stdout END ====
[2025-11-23 13:36:31] 2025-11-23 18:36:30,697 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 13:36:31] 2025-11-23 18:36:30,700 [wrapper] pilotpid: 1920913
[2025-11-23 13:36:31] 2025-11-23 18:36:30,702 [wrapper] Pilot exit status: 0
[2025-11-23 13:36:31] 2025-11-23 18:36:30,730 [wrapper] pandaids: 6895329126
[2025-11-23 13:36:31] 2025-11-23 18:36:30,897 [wrapper] cleanup supervisor_pilot 3616242 1920914
[2025-11-23 13:36:31] 2025-11-23 18:36:30,907 [wrapper] Test setup, not cleaning
[2025-11-23 13:36:31] 2025-11-23 18:36:30,926 [wrapper] apfmon messages muted
[2025-11-23 13:36:31] 2025-11-23 18:36:30,929 [wrapper] ==== wrapper stdout END ====
[2025-11-23 13:36:31] 2025-11-23 18:36:30,933 [wrapper] ==== wrapper stderr END ====
[2025-11-23 13:36:31]  *** Error codes and diagnostics ***
[2025-11-23 13:36:31]     "exeErrorCode": 0,
[2025-11-23 13:36:31]     "exeErrorDiag": "",
[2025-11-23 13:36:31]     "pilotErrorCode": 0,
[2025-11-23 13:36:31]     "pilotErrorDiag": "",
[2025-11-23 13:36:31]  *** Listing of results directory ***
[2025-11-23 13:36:31] total 1308316
[2025-11-23 13:36:31] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 13:42 pilot3.tar.gz
[2025-11-23 13:36:31] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 13:50 queuedata.json
[2025-11-23 13:36:31] -rwx------. 1 boincer umatlas     36292 Nov 21 13:52 runpilot2-wrapper.sh
[2025-11-23 13:36:31] -rw-r--r--. 1 boincer umatlas       100 Nov 23 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 13:36:31] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 00:04 run_atlas
[2025-11-23 13:36:31] -rw-r--r--. 1 boincer umatlas       105 Nov 23 00:04 job.xml
[2025-11-23 13:36:31] -rw-r--r--. 2 boincer umatlas 407099096 Nov 23 00:04 EVNT.47483658._000109.pool.root.1
[2025-11-23 13:36:31] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:04 start_atlas.sh
[2025-11-23 13:36:31] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 00:04 shared
[2025-11-23 13:36:31] -rw-r--r--. 2 boincer umatlas    590097 Nov 23 00:04 input.tar.gz
[2025-11-23 13:36:31] -rw-r--r--. 1 boincer umatlas         0 Nov 23 00:04 boinc_lockfile
[2025-11-23 13:36:31] -rw-r--r--. 1 boincer umatlas      2786 Nov 23 00:04 pandaJob.out
[2025-11-23 13:36:31] -rw-------. 1 boincer umatlas        57 Nov 23 00:04 setup.sh.local
[2025-11-23 13:36:31] -rw-------. 1 boincer umatlas    989784 Nov 23 00:05 agis_schedconf.cvmfs.json
[2025-11-23 13:36:31] drwx------. 5 boincer umatlas      4096 Nov 23 00:05 pilot3
[2025-11-23 13:36:31] -rw-r--r--. 1 boincer umatlas       533 Nov 23 13:25 boinc_task_state.xml
[2025-11-23 13:36:31] -rw-r--r--. 1 boincer umatlas      6947 Nov 23 13:30 init_data.xml
[2025-11-23 13:36:31] -rw-------. 1 boincer umatlas 911773263 Nov 23 13:33 HITS.47556137._001085.pool.root.1
[2025-11-23 13:36:31] -rw-------. 1 boincer umatlas      1060 Nov 23 13:35 memory_monitor_summary.json
[2025-11-23 13:36:31] -rw-------. 1 boincer umatlas   1526164 Nov 23 13:35 agis_ddmendpoints.agis.ALL.json
[2025-11-23 13:36:31] -rw-------. 1 boincer umatlas   2439611 Nov 23 13:35 log.47556137._001085.job.log.tgz.1
[2025-11-23 13:36:31] -rw-------. 1 boincer umatlas        95 Nov 23 13:35 pilot_heartbeat.json
[2025-11-23 13:36:31] -rw-------. 1 boincer umatlas      8601 Nov 23 13:35 heartbeat.json
[2025-11-23 13:36:31] -rw-r--r--. 1 boincer umatlas      8192 Nov 23 13:36 boinc_mmap_file
[2025-11-23 13:36:31] -rw-------. 1 boincer umatlas      4825 Nov 23 13:36 pilotlog.txt
[2025-11-23 13:36:31] -rw-------. 1 boincer umatlas   6018115 Nov 23 13:36 log.47556137._001085.job.log.1
[2025-11-23 13:36:31] -rw-------. 1 boincer umatlas       353 Nov 23 13:36 output.list
[2025-11-23 13:36:31] -rw-r--r--. 1 boincer umatlas        29 Nov 23 13:36 wrapper_checkpoint.txt
[2025-11-23 13:36:31] -rw-r--r--. 1 boincer umatlas       620 Nov 23 13:36 runtime_log
[2025-11-23 13:36:31] -rw-------. 1 boincer umatlas   8478720 Nov 23 13:36 result.tar.gz
[2025-11-23 13:36:31] -rw-r--r--. 1 boincer umatlas      9340 Nov 23 13:36 runtime_log.err
[2025-11-23 13:36:31] -rw-------. 1 boincer umatlas       663 Nov 23 13:36 dTPODmzPlg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWeJKDmt5Mifn.diag
[2025-11-23 13:36:31] -rw-r--r--. 1 boincer umatlas     20917 Nov 23 13:36 stderr.txt
[2025-11-23 13:36:31] HITS file was successfully produced:
[2025-11-23 13:36:31] -rw-------. 1 boincer umatlas 911773263 Nov 23 13:33 shared/HITS.pool.root.1
[2025-11-23 13:36:31]  *** Contents of shared directory: ***
[2025-11-23 13:36:31] total 1296848
[2025-11-23 13:36:31] -rw-r--r--. 2 boincer umatlas 407099096 Nov 23 00:04 ATLAS.root_0
[2025-11-23 13:36:31] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:04 start_atlas.sh
[2025-11-23 13:36:31] -rw-r--r--. 2 boincer umatlas    590097 Nov 23 00:04 input.tar.gz
[2025-11-23 13:36:31] -rw-------. 1 boincer umatlas 911773263 Nov 23 13:33 HITS.pool.root.1
[2025-11-23 13:36:31] -rw-------. 1 boincer umatlas   8478720 Nov 23 13:36 result.tar.gz
13:36:33 (1910852): run_atlas exited; CPU time 196226.948326
13:36:33 (1910852): called boinc_finish(0)

</stderr_txt>
]]>

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