Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:33 (2322304): wrapper (7.7.26015): starting
00:04:33 (2322304): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 00:04:33] Arguments: --nthreads 9
[2025-11-24 00:04:33] Threads: 9
[2025-11-24 00:04:33] Checking for CVMFS
[2025-11-24 00:04:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:04:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:04:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:04:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:04:34] 2.13.3.0 10892 26680 325552 153233 0 321 37349305 40960000 21393 16776704 0 76561876 99.620 77387117 39676 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 00:04:34] CVMFS is ok
[2025-11-24 00:04:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:04:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:04:34] Further information can be found at the LHC@home message board.
[2025-11-24 00:04:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:04:34] Checking for apptainer binary...
[2025-11-24 00:04:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:04:34] Running /usr/bin/apptainer --version
[2025-11-24 00:04:34] apptainer version 1.4.4-1.el9
[2025-11-24 00:04:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:04:34] c6-8-12-4.aglt2.org
[2025-11-24 00:04:34] apptainer works
[2025-11-24 00:04:34] Set ATHENA_PROC_NUMBER=9
[2025-11-24 00:04:34] Set ATHENA_CORE_NUMBER=9
[2025-11-24 00:04:34] Starting ATLAS job with PandaID=6893864386
[2025-11-24 00:04:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
02:46:40 (3521852): wrapper (7.7.26015): starting
02:46:40 (3521852): wrapper: running run_atlas (--nthreads 11)
[2025-11-25 02:46:40] Arguments: --nthreads 11
[2025-11-25 02:46:40] Threads: 11
[2025-11-25 02:46:40] This job has been restarted, cleaning up previous attempt
[2025-11-25 02:46:40] Checking for CVMFS
[2025-11-25 02:46:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 02:46:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 02:46:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 02:46:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 02:46:41] 2.13.3.0 10892 28282 320016 153275 1 284 28504974 40960000 21475 16776704 0 83232416 99.608 86040124 39082 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 02:46:41] CVMFS is ok
[2025-11-25 02:46:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 02:46:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 02:46:41] Further information can be found at the LHC@home message board.
[2025-11-25 02:46:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 02:46:41] Checking for apptainer binary...
[2025-11-25 02:46:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 02:46:41] Running /usr/bin/apptainer --version
[2025-11-25 02:46:41] apptainer version 1.4.4-1.el9
[2025-11-25 02:46:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 02:46:41] c6-8-12-4.aglt2.org
[2025-11-25 02:46:41] apptainer works
[2025-11-25 02:46:41] Set ATHENA_PROC_NUMBER=11
[2025-11-25 02:46:41] Set ATHENA_CORE_NUMBER=11
[2025-11-25 02:46:41] Starting ATLAS job with PandaID=6893864386
[2025-11-25 02:46:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 20:21:00]  *** The last 200 lines of the pilot log: ***
[2025-11-25 20:21:00] 2025-11-26 01:20:26,824 | INFO     | mean x: 1764088421.7915058
[2025-11-25 20:21:00] 2025-11-26 01:20:26,824 | INFO     | mean y: 3365264.6785714286
[2025-11-25 20:21:00] 2025-11-26 01:20:26,824 | INFO     | intersect: -19741746649.374863
[2025-11-25 20:21:00] 2025-11-26 01:20:26,825 | INFO     | chi2: 6.413052231298886
[2025-11-25 20:21:00] 2025-11-26 01:20:26,827 | INFO     | sum of square deviations: 339720507465.28564
[2025-11-25 20:21:00] 2025-11-26 01:20:26,847 | INFO     | sum of deviations: 4258187239264.885
[2025-11-25 20:21:00] 2025-11-26 01:20:26,848 | INFO     | mean x: 1764088269.3171678
[2025-11-25 20:21:00] 2025-11-26 01:20:26,848 | INFO     | mean y: 3377545.7526673134
[2025-11-25 20:21:00] 2025-11-26 01:20:26,848 | INFO     | intersect: -22108381951.45942
[2025-11-25 20:21:00] 2025-11-26 01:20:26,849 | INFO     | chi2: 3.217535393544816
[2025-11-25 20:21:00] 2025-11-26 01:20:26,849 | INFO     | current chi2=3.217535393544816 (change=49.8283301383132 %)
[2025-11-25 20:21:00] 2025-11-26 01:20:26,850 | INFO     | sum of square deviations: 334802021965.73596
[2025-11-25 20:21:00] 2025-11-26 01:20:26,883 | INFO     | sum of deviations: 4457419585136.7
[2025-11-25 20:21:00] 2025-11-26 01:20:26,884 | INFO     | mean x: 1764088116.8430798
[2025-11-25 20:21:00] 2025-11-26 01:20:26,884 | INFO     | mean y: 3383718.9795321636
[2025-11-25 20:21:00] 2025-11-26 01:20:26,884 | INFO     | intersect: -23482976595.558838
[2025-11-25 20:21:00] 2025-11-26 01:20:26,886 | INFO     | chi2: 2.2043924326496045
[2025-11-25 20:21:00] 2025-11-26 01:20:26,886 | INFO     | current chi2=2.2043924326496045 (change=31.4881683330611 %)
[2025-11-25 20:21:00] 2025-11-26 01:20:26,888 | INFO     | sum of square deviations: 329930945408.46234
[2025-11-25 20:21:00] 2025-11-26 01:20:26,909 | INFO     | sum of deviations: 4409673110115.358
[2025-11-25 20:21:00] 2025-11-26 01:20:26,910 | INFO     | mean x: 1764087964.3643486
[2025-11-25 20:21:00] 2025-11-26 01:20:26,910 | INFO     | mean y: 3382223.619980411
[2025-11-25 20:21:00] 2025-11-26 01:20:26,910 | INFO     | intersect: -23574434190.978413
[2025-11-25 20:21:00] 2025-11-26 01:20:26,912 | INFO     | chi2: 2.1987768120071234
[2025-11-25 20:21:00] 2025-11-26 01:20:26,912 | INFO     | current chi2=2.1987768120071234 (change=0.2547468662705999 %)
[2025-11-25 20:21:00] 2025-11-26 01:20:26,913 | INFO     | right removable region: 1020
[2025-11-25 20:21:00] 2025-11-26 01:20:26,915 | INFO     | sum of square deviations: 339717604268.67896
[2025-11-25 20:21:00] 2025-11-26 01:20:26,941 | INFO     | sum of deviations: 3547549704046.8877
[2025-11-25 20:21:00] 2025-11-26 01:20:26,941 | INFO     | mean x: 1764088574.3103783
[2025-11-25 20:21:00] 2025-11-26 01:20:26,942 | INFO     | mean y: 3374780.2628516005
[2025-11-25 20:21:00] 2025-11-26 01:20:26,942 | INFO     | intersect: -18418372638.97817
[2025-11-25 20:21:00] 2025-11-26 01:20:26,944 | INFO     | chi2: 4.437864307770675
[2025-11-25 20:21:00] 2025-11-26 01:20:26,944 | INFO     | current chi2=4.437864307770675 (change=30.799498464838805 %)
[2025-11-25 20:21:00] 2025-11-26 01:20:26,946 | INFO     | sum of square deviations: 334797286098.07007
[2025-11-25 20:21:00] 2025-11-26 01:20:26,974 | INFO     | sum of deviations: 3423713235157.48
[2025-11-25 20:21:00] 2025-11-26 01:20:26,974 | INFO     | mean x: 1764088726.8128655
[2025-11-25 20:21:00] 2025-11-26 01:20:26,975 | INFO     | mean y: 3378618.221247563
[2025-11-25 20:21:00] 2025-11-26 01:20:26,975 | INFO     | intersect: -18036594143.720837
[2025-11-25 20:21:00] 2025-11-26 01:20:26,976 | INFO     | chi2: 4.334864699072473
[2025-11-25 20:21:00] 2025-11-26 01:20:26,976 | INFO     | current chi2=4.334864699072473 (change=2.320927400097609 %)
[2025-11-25 20:21:00] 2025-11-26 01:20:26,976 | INFO     | left removable region: 20
[2025-11-25 20:21:00] 2025-11-26 01:20:26,977 | INFO     | sum of square deviations: 309979169504.81573
[2025-11-25 20:21:00] 2025-11-26 01:20:26,997 | INFO     | sum of deviations: 3795968972625.0483
[2025-11-25 20:21:00] 2025-11-26 01:20:26,997 | INFO     | mean x: 1764088543.928
[2025-11-25 20:21:00] 2025-11-26 01:20:26,997 | INFO     | mean y: 3401138.084
[2025-11-25 20:21:00] 2025-11-26 01:20:26,997 | INFO     | intersect: -21599422652.98353
[2025-11-25 20:21:00] 2025-11-26 01:20:26,998 | INFO     | chi2: 0.05505065386532855
[2025-11-25 20:21:00] 2025-11-26 01:20:26,999 | INFO     | current memory leak: 12.25 B/s (using 1000 data points, chi2=0.06)
[2025-11-25 20:21:00] 2025-11-26 01:20:27,000 | INFO     | could have reported an average CPU frequency of 2877 MHz (38 samples)
[2025-11-25 20:21:00] 2025-11-26 01:20:27,000 | INFO     | ..............................
[2025-11-25 20:21:00] 2025-11-26 01:20:27,001 | INFO     | . Timing measurements:
[2025-11-25 20:21:00] 2025-11-26 01:20:27,001 | INFO     | . get job = 0 s
[2025-11-25 20:21:00] 2025-11-26 01:20:27,001 | INFO     | . initial setup = 2 s
[2025-11-25 20:21:00] 2025-11-26 01:20:27,001 | INFO     | . payload setup = 9 s
[2025-11-25 20:21:00] 2025-11-26 01:20:27,001 | INFO     | . stage-in = 0 s
[2025-11-25 20:21:00] 2025-11-26 01:20:27,001 | INFO     | . payload execution = 63168 s
[2025-11-25 20:21:00] 2025-11-26 01:20:27,001 | INFO     | . stage-out = 3 s
[2025-11-25 20:21:00] 2025-11-26 01:20:27,001 | INFO     | . log creation = 0 s
[2025-11-25 20:21:00] 2025-11-26 01:20:27,001 | INFO     | ..............................
[2025-11-25 20:21:00] 2025-11-26 01:20:27,105 | INFO     | 
[2025-11-25 20:21:00] 2025-11-26 01:20:27,105 | INFO     | job summary report
[2025-11-25 20:21:00] 2025-11-26 01:20:27,105 | INFO     | --------------------------------------------------
[2025-11-25 20:21:00] 2025-11-26 01:20:27,105 | INFO     | PanDA job id: 6893864386
[2025-11-25 20:21:00] 2025-11-26 01:20:27,105 | INFO     | task id: 47523449
[2025-11-25 20:21:00] 2025-11-26 01:20:27,105 | INFO     | errors: (none)
[2025-11-25 20:21:00] 2025-11-26 01:20:27,105 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 20:21:00] 2025-11-26 01:20:27,105 | INFO     | pilot state: finished 
[2025-11-25 20:21:00] 2025-11-26 01:20:27,105 | INFO     | transexitcode: 0
[2025-11-25 20:21:00] 2025-11-26 01:20:27,105 | INFO     | exeerrorcode: 0
[2025-11-25 20:21:00] 2025-11-26 01:20:27,105 | INFO     | exeerrordiag: 
[2025-11-25 20:21:00] 2025-11-26 01:20:27,106 | INFO     | exitcode: 0
[2025-11-25 20:21:00] 2025-11-26 01:20:27,106 | INFO     | exitmsg: OK
[2025-11-25 20:21:00] 2025-11-26 01:20:27,106 | INFO     | cpuconsumptiontime: 254910 s
[2025-11-25 20:21:00] 2025-11-26 01:20:27,106 | INFO     | nevents: 1000
[2025-11-25 20:21:00] 2025-11-26 01:20:27,106 | INFO     | neventsw: 0
[2025-11-25 20:21:00] 2025-11-26 01:20:27,106 | INFO     | pid: 3541988
[2025-11-25 20:21:00] 2025-11-26 01:20:27,106 | INFO     | pgrp: 3541988
[2025-11-25 20:21:00] 2025-11-26 01:20:27,106 | INFO     | corecount: 11
[2025-11-25 20:21:00] 2025-11-26 01:20:27,106 | INFO     | event service: False
[2025-11-25 20:21:00] 2025-11-26 01:20:27,106 | INFO     | sizes: {0: 2284253, 1: 2284253, 6: 2284543, 11: 2284571, 63182: 2339936, 63187: 2348935, 63189: 2349119, 63196: 2349365}
[2025-11-25 20:21:00] 2025-11-26 01:20:27,106 | INFO     | --------------------------------------------------
[2025-11-25 20:21:00] 2025-11-26 01:20:27,106 | INFO     | 
[2025-11-25 20:21:00] 2025-11-26 01:20:27,106 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 20:21:00] 2025-11-26 01:20:27,133 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 20:21:00] 2025-11-26 01:20:27,133 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 20:21:00] 2025-11-26 01:20:27,134 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 20:21:00] 2025-11-26 01:20:27,134 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 20:21:00] 2025-11-26 01:20:27,134 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 20:21:00] 2025-11-26 01:20:27,134 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 20:21:00] 2025-11-26 01:20:27,134 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 20:21:00] 2025-11-26 01:20:27,134 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 20:21:00] 2025-11-26 01:20:27,134 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 20:21:00] 2025-11-26 01:20:27,134 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 20:21:00] 2025-11-26 01:20:27,134 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 20:21:00] 2025-11-26 01:20:27,134 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 20:21:00] 2025-11-26 01:20:27,134 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 20:21:00] 2025-11-26 01:20:27,134 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 20:21:00] 2025-11-26 01:20:27,134 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 20:21:00] 2025-11-26 01:20:27,134 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 20:21:00] 2025-11-26 01:20:27,134 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 20:21:00] 2025-11-26 01:20:27,134 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 20:21:00] 2025-11-26 01:20:27,135 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 20:21:00] 2025-11-26 01:20:27,135 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 20:21:00] 2025-11-26 01:20:27,135 | INFO     | job 6893864386 has completed (purged errors)
[2025-11-25 20:21:00] 2025-11-26 01:20:27,135 | INFO     | overall cleanup function is called
[2025-11-25 20:21:00] 2025-11-26 01:20:27,424 | INFO     | PID=3529193 has CPU usage=15.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-25 20:21:00] 2025-11-26 01:20:27,425 | INFO     | .. there are 31 such processes running
[2025-11-25 20:21:00] 2025-11-26 01:20:28,164 | INFO     | --- collectZombieJob: --- 10, [3541988]
[2025-11-25 20:21:00] 2025-11-26 01:20:28,164 | INFO     | zombie collector waiting for pid 3541988
[2025-11-25 20:21:00] 2025-11-26 01:20:28,164 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 20:21:00] 2025-11-26 01:20:28,164 | INFO     | collected zombie processes
[2025-11-25 20:21:00] 2025-11-26 01:20:28,164 | INFO     | will attempt to kill all subprocesses of pid=3541988
[2025-11-25 20:21:00] 2025-11-26 01:20:28,500 | INFO     | process IDs to be killed: [3541988] (in reverse order)
[2025-11-25 20:21:00] 2025-11-26 01:20:28,615 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 20:21:00] 2025-11-26 01:20:28,615 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 20:21:00] 2025-11-26 01:20:28,629 | INFO     | did not find any defunct processes belonging to 3541988
[2025-11-25 20:21:00] 2025-11-26 01:20:28,642 | INFO     | did not find any defunct processes belonging to 3541988
[2025-11-25 20:21:00] 2025-11-26 01:20:28,643 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 20:21:00] 2025-11-26 01:20:28,643 | INFO     | ready for new job
[2025-11-25 20:21:00] 2025-11-26 01:20:28,643 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 20:21:00] 2025-11-26 01:20:28,649 | INFO     | ***************************************
[2025-11-25 20:21:00] 2025-11-26 01:20:28,650 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 20:21:00] 2025-11-26 01:20:28,650 | INFO     | ***************************************
[2025-11-25 20:21:00] 2025-11-26 01:20:28,650 | INFO     | 
[2025-11-25 20:21:00] 2025-11-26 01:20:28,654 | INFO     | architecture information:
[2025-11-25 20:21:00] 2025-11-26 01:20:28,654 | INFO     | executing command: cat /etc/os-release
[2025-11-25 20:21:00] 2025-11-26 01:20:28,672 | INFO     | cat /etc/os-release:
[2025-11-25 20:21:00] NAME="CentOS Linux"
[2025-11-25 20:21:00] VERSION="7 (Core)"
[2025-11-25 20:21:00] ID="centos"
[2025-11-25 20:21:00] ID_LIKE="rhel fedora"
[2025-11-25 20:21:00] VERSION_ID="7"
[2025-11-25 20:21:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 20:21:00] ANSI_COLOR="0;31"
[2025-11-25 20:21:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 20:21:00] HOME_URL="https://www.centos.org/"
[2025-11-25 20:21:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 20:21:00] 
[2025-11-25 20:21:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 20:21:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 20:21:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 20:21:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 20:21:00] 
[2025-11-25 20:21:00] 2025-11-26 01:20:28,672 | INFO     | ***************************************
[2025-11-25 20:21:00] 2025-11-26 01:20:29,175 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 20:21:00] 2025-11-26 01:20:29,227 | INFO     | sufficient remaining disk space (52359593984 B)
[2025-11-25 20:21:00] 2025-11-26 01:20:29,228 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 20:21:00] 2025-11-26 01:20:29,228 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 20:21:00] 2025-11-26 01:20:29,228 | INFO     | update_server=False
[2025-11-25 20:21:00] 2025-11-26 01:20:29,228 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 20:21:00] 2025-11-26 01:20:29,323 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 20:21:00] 2025-11-26 01:20:29,323 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 20:21:00] 2025-11-26 01:20:29,323 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:21:00] 2025-11-26 01:20:29,323 | INFO     | will abort loop
[2025-11-25 20:21:00] 2025-11-26 01:20:29,702 | INFO     | all job control threads have been joined
[2025-11-25 20:21:00] 2025-11-26 01:20:30,105 | INFO     | all payload control threads have been joined
[2025-11-25 20:21:00] 2025-11-26 01:20:30,226 | INFO     | all data control threads have been joined
[2025-11-25 20:21:00] 2025-11-26 01:20:30,236 | INFO     | [job] retrieve thread has finished
[2025-11-25 20:21:00] 2025-11-26 01:20:30,241 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 20:21:00] 2025-11-26 01:20:30,329 | INFO     | [job] job monitor thread has finished
[2025-11-25 20:21:00] 2025-11-26 01:20:30,337 | INFO     | [data] copytool_in thread has finished
[2025-11-25 20:21:00] 2025-11-26 01:20:30,352 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 20:21:00] 2025-11-26 01:20:30,708 | INFO     | [job] control thread has finished
[2025-11-25 20:21:00] 2025-11-26 01:20:30,733 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 20:21:00] 2025-11-26 01:20:30,924 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 20:21:00] 2025-11-26 01:20:30,926 | INFO     | [job] validate thread has finished
[2025-11-25 20:21:00] 2025-11-26 01:20:30,951 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 20:21:00] 2025-11-26 01:20:31,111 | INFO     | [payload] control thread has finished
[2025-11-25 20:21:00] 2025-11-26 01:20:31,174 | INFO     | [payload] failed_post thread has finished
[2025-11-25 20:21:00] 2025-11-26 01:20:31,231 | INFO     | [data] control thread has finished
[2025-11-25 20:21:00] 2025-11-26 01:20:31,608 | INFO     | [payload] validate_post thread has finished
[2025-11-25 20:21:00] 2025-11-26 01:20:32,122 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:21:00] 2025-11-26 01:20:32,742 | INFO     | [data] copytool_out thread has finished
[2025-11-25 20:21:00] 2025-11-26 01:20:33,127 | INFO     | [job] queue monitor thread has finished
[2025-11-25 20:21:00] 2025-11-26 01:20:34,975 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 20:21:00] 2025-11-26 01:20:39,421 | INFO     | job.realtimelogging is not enabled
[2025-11-25 20:21:00] 2025-11-26 01:20:40,427 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 20:21:00] 2025-11-26 01:20:45,675 | INFO     | [monitor] cgroup control has ended
[2025-11-25 20:21:00] 2025-11-26 01:20:46,650 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140455540311872)>', '<ExcThread(monitor, started 140455178114816)>']
[2025-11-25 20:21:00] 2025-11-26 01:20:51,676 | INFO     | all workflow threads have been joined
[2025-11-25 20:21:00] 2025-11-26 01:20:51,676 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 20:21:00] 2025-11-26 01:20:51,676 | INFO     | traces error code: 0
[2025-11-25 20:21:00] 2025-11-26 01:20:51,676 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 20:21:00] 2025-11-26 01:20:59,915 | INFO     | PID=3529193 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 20:21:00] 2025-11-26 01:20:59,916 | INFO     | .. there are 31 such processes running
[2025-11-25 20:21:00] 2025-11-26 01:20:59,918 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 20:21:00] 2025-11-26 01:20:59,918 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 20:21:00] 2025-11-26 01:20:59,918 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 20:21:00] 2025-11-26 01:20:59,918 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 20:21:00] 2025-11-26 01:20:59,918 | INFO     | [monitor] control thread has ended
[2025-11-25 20:21:00] 2025-11-26 01:21:00,081 [wrapper] ==== pilot stdout END ====
[2025-11-25 20:21:00] 2025-11-26 01:21:00,085 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 20:21:00] 2025-11-26 01:21:00,088 [wrapper] pilotpid: 3529193
[2025-11-25 20:21:00] 2025-11-26 01:21:00,091 [wrapper] Pilot exit status: 0
[2025-11-25 20:21:00] 2025-11-26 01:21:00,116 [wrapper] pandaids: 6893864386 6893864386
[2025-11-25 20:21:00] 2025-11-26 01:21:00,193 [wrapper] cleanup supervisor_pilot 2667038 3529195
[2025-11-25 20:21:00] 2025-11-26 01:21:00,197 [wrapper] Test setup, not cleaning
[2025-11-25 20:21:00] 2025-11-26 01:21:00,202 [wrapper] apfmon messages muted
[2025-11-25 20:21:00] 2025-11-26 01:21:00,206 [wrapper] ==== wrapper stdout END ====
[2025-11-25 20:21:00] 2025-11-26 01:21:00,209 [wrapper] ==== wrapper stderr END ====
[2025-11-25 20:21:00]  *** Error codes and diagnostics ***
[2025-11-25 20:21:00]     "exeErrorCode": 0,
[2025-11-25 20:21:00]     "exeErrorDiag": "",
[2025-11-25 20:21:00]     "pilotErrorCode": 0,
[2025-11-25 20:21:00]     "pilotErrorDiag": "",
[2025-11-25 20:21:00]  *** Listing of results directory ***
[2025-11-25 20:21:00] total 1725568
[2025-11-25 20:21:00] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-25 20:21:00] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 09:06 pilot3.tar.gz
[2025-11-25 20:21:00] -rwx------. 1 boincer umatlas     36292 Nov 20 09:20 runpilot2-wrapper.sh
[2025-11-25 20:21:00] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 09:20 queuedata.json
[2025-11-25 20:21:00] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 20:21:00] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:04 run_atlas
[2025-11-25 20:21:00] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:04 job.xml
[2025-11-25 20:21:00] -rw-r--r--. 3 boincer umatlas 409512479 Nov 24 00:04 EVNT.47493127._000604.pool.root.1
[2025-11-25 20:21:00] -rw-r--r--. 3 boincer umatlas 409512479 Nov 24 00:04 ATLAS.root_0
[2025-11-25 20:21:00] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:04 start_atlas.sh
[2025-11-25 20:21:00] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:04 shared
[2025-11-25 20:21:00] -rw-r--r--. 2 boincer umatlas    590096 Nov 24 00:04 input.tar.gz
[2025-11-25 20:21:00] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:04 boinc_lockfile
[2025-11-25 20:21:00] -rw-r--r--. 1 boincer umatlas      2782 Nov 25 02:46 pandaJob.out
[2025-11-25 20:21:00] -rw-------. 1 boincer umatlas        57 Nov 25 02:46 setup.sh.local
[2025-11-25 20:21:00] -rw-------. 1 boincer umatlas    991830 Nov 25 02:46 agis_schedconf.cvmfs.json
[2025-11-25 20:21:00] -rw-r--r--. 1 boincer umatlas       534 Nov 25 20:09 boinc_task_state.xml
[2025-11-25 20:21:00] -rw-------. 1 boincer umatlas 922119614 Nov 25 20:19 HITS.47523449._006031.pool.root.1
[2025-11-25 20:21:00] -rw-------. 1 boincer umatlas      1069 Nov 25 20:20 memory_monitor_summary.json
[2025-11-25 20:21:00] -rw-------. 1 boincer umatlas   1516240 Nov 25 20:20 agis_ddmendpoints.agis.ALL.json
[2025-11-25 20:21:00] -rw-------. 1 boincer umatlas   2523180 Nov 25 20:20 log.47523449._006031.job.log.tgz.1
[2025-11-25 20:21:00] -rw-r--r--. 1 boincer umatlas      6845 Nov 25 20:20 init_data.xml
[2025-11-25 20:21:00] -rw-------. 1 boincer umatlas      8645 Nov 25 20:20 heartbeat.json
[2025-11-25 20:21:00] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 20:20 boinc_mmap_file
[2025-11-25 20:21:00] -rw-r--r--. 1 boincer umatlas        30 Nov 25 20:20 wrapper_checkpoint.txt
[2025-11-25 20:21:00] -rw-------. 1 boincer umatlas        96 Nov 25 20:20 pilot_heartbeat.json
[2025-11-25 20:21:00] -rw-------. 1 boincer umatlas       823 Nov 25 20:20 pilotlog.txt
[2025-11-25 20:21:00] -rw-------. 1 boincer umatlas   8438243 Nov 25 20:21 log.47523449._006031.job.log.1
[2025-11-25 20:21:00] -rw-------. 1 boincer umatlas       353 Nov 25 20:21 output.list
[2025-11-25 20:21:00] -rw-r--r--. 1 boincer umatlas       620 Nov 25 20:21 runtime_log
[2025-11-25 20:21:00] -rw-------. 1 boincer umatlas  10977280 Nov 25 20:21 result.tar.gz
[2025-11-25 20:21:00] -rw-r--r--. 1 boincer umatlas      9435 Nov 25 20:21 runtime_log.err
[2025-11-25 20:21:00] -rw-------. 1 boincer umatlas       790 Nov 25 20:21 0WKMDmWhKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmA4HKDmAXg0Ao.diag
[2025-11-25 20:21:00] -rw-r--r--. 1 boincer umatlas     23452 Nov 25 20:21 stderr.txt
[2025-11-25 20:21:00] HITS file was successfully produced:
[2025-11-25 20:21:00] -rw-------. 1 boincer umatlas 922119614 Nov 25 20:19 shared/HITS.pool.root.1
[2025-11-25 20:21:00]  *** Contents of shared directory: ***
[2025-11-25 20:21:00] total 1311744
[2025-11-25 20:21:00] -rw-r--r--. 3 boincer umatlas 409512479 Nov 24 00:04 ATLAS.root_0
[2025-11-25 20:21:00] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:04 start_atlas.sh
[2025-11-25 20:21:00] -rw-r--r--. 2 boincer umatlas    590096 Nov 24 00:04 input.tar.gz
[2025-11-25 20:21:00] -rw-------. 1 boincer umatlas 922119614 Nov 25 20:19 HITS.pool.root.1
[2025-11-25 20:21:00] -rw-------. 1 boincer umatlas  10977280 Nov 25 20:21 result.tar.gz
20:21:02 (3521852): run_atlas exited; CPU time 255706.079841
20:21:02 (3521852): called boinc_finish(0)

</stderr_txt>
]]>

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