Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:28 (996738): wrapper (7.7.26015): starting
00:02:28 (996738): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 00:02:28] Arguments: --nthreads 12
[2025-11-23 00:02:28] Threads: 12
[2025-11-23 00:02:28] Checking for CVMFS
[2025-11-23 00:02:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:02:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:02:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:02:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:02:30] 2.13.3.0 12359 25286 373484 153197 2 526 28971366 32935937 30920 16776704 0 162501472 99.643 145652481 32535 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-23 00:02:30] CVMFS is ok
[2025-11-23 00:02:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:02:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 00:02:30] Further information can be found at the LHC@home message board.
[2025-11-23 00:02:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:02:30] Checking for apptainer binary...
[2025-11-23 00:02:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:02:30] Running /usr/bin/apptainer --version
[2025-11-23 00:02:31] apptainer version 1.4.4-1.el9
[2025-11-23 00:02:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:02:31] c6-12-29-3.aglt2.org
[2025-11-23 00:02:31] apptainer works
[2025-11-23 00:02:31] Set ATHENA_PROC_NUMBER=12
[2025-11-23 00:02:31] Set ATHENA_CORE_NUMBER=12
[2025-11-23 00:02:31] Starting ATLAS job with PandaID=6895329885
[2025-11-23 00:02:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 19:53:49]  *** The last 200 lines of the pilot log: ***
[2025-11-23 19:53:49] 2025-11-24 00:53:15,111 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 19:53:49] 2025-11-24 00:53:15,111 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 19:53:49] 2025-11-24 00:53:15,132 | INFO     | fitting pss+swap vs Time
[2025-11-23 19:53:49] 2025-11-24 00:53:15,134 | INFO     | sum of square deviations: 494082708795.36993
[2025-11-23 19:53:49] 2025-11-24 00:53:15,163 | INFO     | sum of deviations: 4382083277723.682
[2025-11-23 19:53:49] 2025-11-24 00:53:15,163 | INFO     | mean x: 1763909938.9246576
[2025-11-23 19:53:49] 2025-11-24 00:53:15,163 | INFO     | mean y: 3458132.3827054794
[2025-11-23 19:53:49] 2025-11-24 00:53:15,164 | INFO     | intersect: -15640886648.712734
[2025-11-23 19:53:49] 2025-11-24 00:53:15,165 | INFO     | chi2: 10.457853996165927
[2025-11-23 19:53:49] 2025-11-24 00:53:15,167 | INFO     | sum of square deviations: 487766064147.06104
[2025-11-23 19:53:49] 2025-11-24 00:53:15,195 | INFO     | sum of deviations: 4906204683357.609
[2025-11-23 19:53:49] 2025-11-24 00:53:15,195 | INFO     | mean x: 1763909786.44368
[2025-11-23 19:53:49] 2025-11-24 00:53:15,195 | INFO     | mean y: 3470787.306964746
[2025-11-23 19:53:49] 2025-11-24 00:53:15,196 | INFO     | intersect: -17738850975.9002
[2025-11-23 19:53:49] 2025-11-24 00:53:15,197 | INFO     | chi2: 6.671775308351935
[2025-11-23 19:53:49] 2025-11-24 00:53:15,197 | INFO     | current chi2=6.671775308351935 (change=36.203208509145846 %)
[2025-11-23 19:53:49] 2025-11-24 00:53:15,199 | INFO     | sum of square deviations: 481503442844.32794
[2025-11-23 19:53:49] 2025-11-24 00:53:15,226 | INFO     | sum of deviations: 5003989369212.059
[2025-11-23 19:53:49] 2025-11-24 00:53:15,227 | INFO     | mean x: 1763909633.9620035
[2025-11-23 19:53:49] 2025-11-24 00:53:15,227 | INFO     | mean y: 3473162.092400691
[2025-11-23 19:53:49] 2025-11-24 00:53:15,231 | INFO     | intersect: -18327828903.90398
[2025-11-23 19:53:49] 2025-11-24 00:53:15,233 | INFO     | chi2: 6.286767437943956
[2025-11-23 19:53:49] 2025-11-24 00:53:15,233 | INFO     | current chi2=6.286767437943956 (change=5.770695993403953 %)
[2025-11-23 19:53:49] 2025-11-24 00:53:15,233 | INFO     | right removable region: 1157
[2025-11-23 19:53:49] 2025-11-24 00:53:15,235 | INFO     | sum of square deviations: 487762911667.0609
[2025-11-23 19:53:49] 2025-11-24 00:53:15,262 | INFO     | sum of deviations: 3830391113364.3496
[2025-11-23 19:53:49] 2025-11-24 00:53:15,262 | INFO     | mean x: 1763910091.44368
[2025-11-23 19:53:49] 2025-11-24 00:53:15,263 | INFO     | mean y: 3471444.516766982
[2025-11-23 19:53:49] 2025-11-24 00:53:15,263 | INFO     | intersect: -13848474608.428364
[2025-11-23 19:53:49] 2025-11-24 00:53:15,264 | INFO     | chi2: 6.467002496735146
[2025-11-23 19:53:49] 2025-11-24 00:53:15,264 | INFO     | current chi2=6.467002496735146 (change=38.1612852970974 %)
[2025-11-23 19:53:49] 2025-11-24 00:53:15,266 | INFO     | sum of square deviations: 481497562090.01013
[2025-11-23 19:53:49] 2025-11-24 00:53:15,293 | INFO     | sum of deviations: 3468286804087.7905
[2025-11-23 19:53:49] 2025-11-24 00:53:15,293 | INFO     | mean x: 1763910243.9585493
[2025-11-23 19:53:49] 2025-11-24 00:53:15,293 | INFO     | mean y: 3480253.4956822107
[2025-11-23 19:53:49] 2025-11-24 00:53:15,293 | INFO     | intersect: -12702184539.824858
[2025-11-23 19:53:49] 2025-11-24 00:53:15,295 | INFO     | chi2: 4.788010826649215
[2025-11-23 19:53:49] 2025-11-24 00:53:15,295 | INFO     | current chi2=4.788010826649215 (change=25.96244041862621 %)
[2025-11-23 19:53:49] 2025-11-24 00:53:15,296 | INFO     | sum of square deviations: 475287064454.53265
[2025-11-23 19:53:49] 2025-11-24 00:53:15,323 | INFO     | sum of deviations: 3319719016009.9194
[2025-11-23 19:53:49] 2025-11-24 00:53:15,324 | INFO     | mean x: 1763910396.461405
[2025-11-23 19:53:49] 2025-11-24 00:53:15,324 | INFO     | mean y: 3483901.492627927
[2025-11-23 19:53:49] 2025-11-24 00:53:15,324 | INFO     | intersect: -12316832226.594831
[2025-11-23 19:53:49] 2025-11-24 00:53:15,325 | INFO     | chi2: 4.632896650954568
[2025-11-23 19:53:49] 2025-11-24 00:53:15,326 | INFO     | current chi2=4.632896650954568 (change=3.239637112583554 %)
[2025-11-23 19:53:49] 2025-11-24 00:53:15,326 | INFO     | left removable region: 30
[2025-11-23 19:53:49] 2025-11-24 00:53:15,327 | INFO     | sum of square deviations: 443856076451.723
[2025-11-23 19:53:49] 2025-11-24 00:53:15,353 | INFO     | sum of deviations: 3601434268833.407
[2025-11-23 19:53:49] 2025-11-24 00:53:15,353 | INFO     | mean x: 1763910518.5048802
[2025-11-23 19:53:49] 2025-11-24 00:53:15,353 | INFO     | mean y: 3507497.4720496894
[2025-11-23 19:53:49] 2025-11-24 00:53:15,354 | INFO     | intersect: -14308807069.184862
[2025-11-23 19:53:49] 2025-11-24 00:53:15,355 | INFO     | chi2: 0.21546688037727355
[2025-11-23 19:53:49] 2025-11-24 00:53:15,355 | INFO     | current memory leak: 8.11 B/s (using 1127 data points, chi2=0.22)
[2025-11-23 19:53:49] 2025-11-24 00:53:15,357 | INFO     | could have reported an average CPU frequency of 2566 MHz (42 samples)
[2025-11-23 19:53:49] 2025-11-24 00:53:15,357 | INFO     | ..............................
[2025-11-23 19:53:49] 2025-11-24 00:53:15,357 | INFO     | . Timing measurements:
[2025-11-23 19:53:49] 2025-11-24 00:53:15,357 | INFO     | . get job = 0 s
[2025-11-23 19:53:49] 2025-11-24 00:53:15,357 | INFO     | . initial setup = 6 s
[2025-11-23 19:53:49] 2025-11-24 00:53:15,357 | INFO     | . payload setup = 52 s
[2025-11-23 19:53:49] 2025-11-24 00:53:15,357 | INFO     | . stage-in = 0 s
[2025-11-23 19:53:49] 2025-11-24 00:53:15,357 | INFO     | . payload execution = 71268 s
[2025-11-23 19:53:49] 2025-11-24 00:53:15,358 | INFO     | . stage-out = 3 s
[2025-11-23 19:53:49] 2025-11-24 00:53:15,358 | INFO     | . log creation = 1 s
[2025-11-23 19:53:49] 2025-11-24 00:53:15,358 | INFO     | ..............................
[2025-11-23 19:53:49] 2025-11-24 00:53:15,643 | INFO     | 
[2025-11-23 19:53:49] 2025-11-24 00:53:15,643 | INFO     | job summary report
[2025-11-23 19:53:49] 2025-11-24 00:53:15,643 | INFO     | --------------------------------------------------
[2025-11-23 19:53:49] 2025-11-24 00:53:15,643 | INFO     | PanDA job id: 6895329885
[2025-11-23 19:53:49] 2025-11-24 00:53:15,643 | INFO     | task id: 47556137
[2025-11-23 19:53:49] 2025-11-24 00:53:15,643 | INFO     | errors: (none)
[2025-11-23 19:53:49] 2025-11-24 00:53:15,644 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 19:53:49] 2025-11-24 00:53:15,644 | INFO     | pilot state: finished 
[2025-11-23 19:53:49] 2025-11-24 00:53:15,644 | INFO     | transexitcode: 0
[2025-11-23 19:53:49] 2025-11-24 00:53:15,644 | INFO     | exeerrorcode: 0
[2025-11-23 19:53:49] 2025-11-24 00:53:15,644 | INFO     | exeerrordiag: 
[2025-11-23 19:53:49] 2025-11-24 00:53:15,644 | INFO     | exitcode: 0
[2025-11-23 19:53:49] 2025-11-24 00:53:15,644 | INFO     | exitmsg: OK
[2025-11-23 19:53:49] 2025-11-24 00:53:15,644 | INFO     | cpuconsumptiontime: 281270 s
[2025-11-23 19:53:49] 2025-11-24 00:53:15,644 | INFO     | nevents: 1000
[2025-11-23 19:53:49] 2025-11-24 00:53:15,644 | INFO     | neventsw: 0
[2025-11-23 19:53:49] 2025-11-24 00:53:15,644 | INFO     | pid: 1036799
[2025-11-23 19:53:49] 2025-11-24 00:53:15,644 | INFO     | pgrp: 1036799
[2025-11-23 19:53:49] 2025-11-24 00:53:15,644 | INFO     | corecount: 12
[2025-11-23 19:53:49] 2025-11-24 00:53:15,645 | INFO     | event service: False
[2025-11-23 19:53:49] 2025-11-24 00:53:15,645 | INFO     | sizes: {0: 2298630, 1: 2298829, 12: 2298829, 19: 2299119, 24: 2299147, 71324: 2355786, 71328: 2364780, 71330: 2364836, 71338: 2365082}
[2025-11-23 19:53:49] 2025-11-24 00:53:15,645 | INFO     | --------------------------------------------------
[2025-11-23 19:53:49] 2025-11-24 00:53:15,645 | INFO     | 
[2025-11-23 19:53:49] 2025-11-24 00:53:15,645 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-23 19:53:49] 2025-11-24 00:53:15,691 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 19:53:49] 2025-11-24 00:53:15,693 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 19:53:49] 2025-11-24 00:53:15,693 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 19:53:49] 2025-11-24 00:53:15,693 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 19:53:49] 2025-11-24 00:53:15,693 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 19:53:49] 2025-11-24 00:53:15,693 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 19:53:49] 2025-11-24 00:53:15,693 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 19:53:49] 2025-11-24 00:53:15,693 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 19:53:49] 2025-11-24 00:53:15,693 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 19:53:49] 2025-11-24 00:53:15,693 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 19:53:49] 2025-11-24 00:53:15,694 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 19:53:49] 2025-11-24 00:53:15,694 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 19:53:49] 2025-11-24 00:53:15,694 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 19:53:49] 2025-11-24 00:53:15,694 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 19:53:49] 2025-11-24 00:53:15,694 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 19:53:49] 2025-11-24 00:53:15,694 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 19:53:49] 2025-11-24 00:53:15,694 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 19:53:49] 2025-11-24 00:53:15,694 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 19:53:49] 2025-11-24 00:53:15,694 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 19:53:49] 2025-11-24 00:53:15,694 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 19:53:49] 2025-11-24 00:53:15,694 | INFO     | job 6895329885 has completed (purged errors)
[2025-11-23 19:53:49] 2025-11-24 00:53:15,695 | INFO     | overall cleanup function is called
[2025-11-23 19:53:49] 2025-11-24 00:53:16,735 | INFO     | --- collectZombieJob: --- 10, [1036799]
[2025-11-23 19:53:49] 2025-11-24 00:53:16,735 | INFO     | zombie collector waiting for pid 1036799
[2025-11-23 19:53:49] 2025-11-24 00:53:16,735 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 19:53:49] 2025-11-24 00:53:16,735 | INFO     | collected zombie processes
[2025-11-23 19:53:49] 2025-11-24 00:53:16,735 | INFO     | will attempt to kill all subprocesses of pid=1036799
[2025-11-23 19:53:49] 2025-11-24 00:53:17,202 | INFO     | process IDs to be killed: [1036799] (in reverse order)
[2025-11-23 19:53:49] 2025-11-24 00:53:17,349 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 19:53:49] 2025-11-24 00:53:17,349 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 19:53:49] 2025-11-24 00:53:17,367 | INFO     | did not find any defunct processes belonging to 1036799
[2025-11-23 19:53:49] 2025-11-24 00:53:17,385 | INFO     | did not find any defunct processes belonging to 1036799
[2025-11-23 19:53:49] 2025-11-24 00:53:17,387 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 19:53:49] 2025-11-24 00:53:17,387 | INFO     | ready for new job
[2025-11-23 19:53:49] 2025-11-24 00:53:17,387 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 19:53:49] 2025-11-24 00:53:17,392 | INFO     | ***************************************
[2025-11-23 19:53:49] 2025-11-24 00:53:17,392 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 19:53:49] 2025-11-24 00:53:17,392 | INFO     | ***************************************
[2025-11-23 19:53:49] 2025-11-24 00:53:17,392 | INFO     | 
[2025-11-23 19:53:49] 2025-11-24 00:53:17,398 | INFO     | architecture information:
[2025-11-23 19:53:49] 2025-11-24 00:53:17,399 | INFO     | executing command: cat /etc/os-release
[2025-11-23 19:53:49] 2025-11-24 00:53:17,418 | INFO     | cat /etc/os-release:
[2025-11-23 19:53:49] NAME="CentOS Linux"
[2025-11-23 19:53:49] VERSION="7 (Core)"
[2025-11-23 19:53:49] ID="centos"
[2025-11-23 19:53:49] ID_LIKE="rhel fedora"
[2025-11-23 19:53:49] VERSION_ID="7"
[2025-11-23 19:53:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 19:53:49] ANSI_COLOR="0;31"
[2025-11-23 19:53:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 19:53:49] HOME_URL="https://www.centos.org/"
[2025-11-23 19:53:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 19:53:49] 
[2025-11-23 19:53:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 19:53:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 19:53:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 19:53:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 19:53:49] 
[2025-11-23 19:53:49] 2025-11-24 00:53:17,419 | INFO     | ***************************************
[2025-11-23 19:53:49] 2025-11-24 00:53:17,922 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-23 19:53:49] 2025-11-24 00:53:17,942 | INFO     | sufficient remaining disk space (86518005760 B)
[2025-11-23 19:53:49] 2025-11-24 00:53:17,943 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 19:53:49] 2025-11-24 00:53:17,943 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 19:53:49] 2025-11-24 00:53:17,943 | INFO     | update_server=False
[2025-11-23 19:53:49] 2025-11-24 00:53:17,943 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 19:53:49] 2025-11-24 00:53:17,943 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 19:53:49] 2025-11-24 00:53:17,943 | INFO     | aborting loop
[2025-11-23 19:53:49] 2025-11-24 00:53:18,182 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 19:53:49] 2025-11-24 00:53:18,258 | INFO     | all payload control threads have been joined
[2025-11-23 19:53:49] 2025-11-24 00:53:18,560 | INFO     | all job control threads have been joined
[2025-11-23 19:53:49] 2025-11-24 00:53:18,707 | INFO     | all data control threads have been joined
[2025-11-23 19:53:49] 2025-11-24 00:53:18,949 | INFO     | [job] retrieve thread has finished
[2025-11-23 19:53:49] 2025-11-24 00:53:18,949 | INFO     | [job] job monitor thread has finished
[2025-11-23 19:53:49] 2025-11-24 00:53:18,963 | INFO     | [payload] validate_post thread has finished
[2025-11-23 19:53:49] 2025-11-24 00:53:19,236 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 19:53:49] 2025-11-24 00:53:19,264 | INFO     | [payload] control thread has finished
[2025-11-23 19:53:49] 2025-11-24 00:53:19,278 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 19:53:49] 2025-11-24 00:53:19,518 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 19:53:49] 2025-11-24 00:53:19,566 | INFO     | [job] control thread has finished
[2025-11-23 19:53:49] 2025-11-24 00:53:19,712 | INFO     | [data] control thread has finished
[2025-11-23 19:53:49] 2025-11-24 00:53:19,785 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 19:53:49] 2025-11-24 00:53:19,940 | INFO     | [data] copytool_in thread has finished
[2025-11-23 19:53:49] 2025-11-24 00:53:19,982 | INFO     | [payload] failed_post thread has finished
[2025-11-23 19:53:49] 2025-11-24 00:53:20,106 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 19:53:49] 2025-11-24 00:53:20,284 | INFO     | [job] validate thread has finished
[2025-11-23 19:53:49] 2025-11-24 00:53:20,475 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 19:53:49] 2025-11-24 00:53:21,242 | INFO     | [data] copytool_out thread has finished
[2025-11-23 19:53:49] 2025-11-24 00:53:21,481 | INFO     | [job] queue monitor thread has finished
[2025-11-23 19:53:49] 2025-11-24 00:53:22,191 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 19:53:49] 2025-11-24 00:53:35,913 | INFO     | [monitor] cgroup control has ended
[2025-11-23 19:53:49] 2025-11-24 00:53:36,103 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140598939506496)>', '<ExcThread(monitor, started 140598195496704)>']
[2025-11-23 19:53:49] 2025-11-24 00:53:41,129 | INFO     | all workflow threads have been joined
[2025-11-23 19:53:49] 2025-11-24 00:53:41,129 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 19:53:49] 2025-11-24 00:53:41,130 | INFO     | traces error code: 0
[2025-11-23 19:53:49] 2025-11-24 00:53:41,130 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 19:53:49] 2025-11-24 00:53:48,671 | INFO     | PID=1010449 has CPU usage=9.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 19:53:49] 2025-11-24 00:53:48,672 | INFO     | .. there are 37 such processes running
[2025-11-23 19:53:49] 2025-11-24 00:53:48,672 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 19:53:49] 2025-11-24 00:53:48,672 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 19:53:49] 2025-11-24 00:53:48,672 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 19:53:49] 2025-11-24 00:53:48,672 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 19:53:49] 2025-11-24 00:53:48,672 | INFO     | [monitor] control thread has ended
[2025-11-23 19:53:49] 2025-11-24 00:53:48,860 [wrapper] ==== pilot stdout END ====
[2025-11-23 19:53:49] 2025-11-24 00:53:48,865 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 19:53:49] 2025-11-24 00:53:48,871 [wrapper] pilotpid: 1010449
[2025-11-23 19:53:49] 2025-11-24 00:53:48,882 [wrapper] Pilot exit status: 0
[2025-11-23 19:53:49] 2025-11-24 00:53:48,896 [wrapper] pandaids: 6895329885
[2025-11-23 19:53:49] 2025-11-24 00:53:49,013 [wrapper] cleanup supervisor_pilot 1093600 1010450
[2025-11-23 19:53:49] 2025-11-24 00:53:49,017 [wrapper] Test setup, not cleaning
[2025-11-23 19:53:49] 2025-11-24 00:53:49,020 [wrapper] apfmon messages muted
[2025-11-23 19:53:49] 2025-11-24 00:53:49,024 [wrapper] ==== wrapper stdout END ====
[2025-11-23 19:53:49] 2025-11-24 00:53:49,027 [wrapper] ==== wrapper stderr END ====
[2025-11-23 19:53:49]  *** Error codes and diagnostics ***
[2025-11-23 19:53:49]     "exeErrorCode": 0,
[2025-11-23 19:53:49]     "exeErrorDiag": "",
[2025-11-23 19:53:49]     "pilotErrorCode": 0,
[2025-11-23 19:53:49]     "pilotErrorDiag": "",
[2025-11-23 19:53:49]  *** Listing of results directory ***
[2025-11-23 19:53:49] total 1329308
[2025-11-23 19:53:49] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 14:48 pilot3.tar.gz
[2025-11-23 19:53:49] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 14:49 queuedata.json
[2025-11-23 19:53:49] -rwx------. 1 boincer umatlas     36292 Nov 21 14:50 runpilot2-wrapper.sh
[2025-11-23 19:53:49] -rw-r--r--. 1 boincer umatlas       100 Nov 23 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 19:53:49] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 00:02 run_atlas
[2025-11-23 19:53:49] -rw-r--r--. 1 boincer umatlas       105 Nov 23 00:02 job.xml
[2025-11-23 19:53:49] -rw-r--r--. 2 boincer umatlas 410606887 Nov 23 00:02 EVNT.47483658._000126.pool.root.1
[2025-11-23 19:53:49] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:02 start_atlas.sh
[2025-11-23 19:53:49] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 00:02 shared
[2025-11-23 19:53:49] -rw-r--r--. 2 boincer umatlas    590101 Nov 23 00:02 input.tar.gz
[2025-11-23 19:53:49] -rw-r--r--. 1 boincer umatlas         0 Nov 23 00:02 boinc_lockfile
[2025-11-23 19:53:49] -rw-r--r--. 1 boincer umatlas      2783 Nov 23 00:02 pandaJob.out
[2025-11-23 19:53:49] -rw-------. 1 boincer umatlas        57 Nov 23 00:02 setup.sh.local
[2025-11-23 19:53:49] -rw-------. 1 boincer umatlas    989784 Nov 23 00:03 agis_schedconf.cvmfs.json
[2025-11-23 19:53:49] drwx------. 5 boincer umatlas      4096 Nov 23 00:03 pilot3
[2025-11-23 19:53:49] -rw-r--r--. 1 boincer umatlas       533 Nov 23 19:43 boinc_task_state.xml
[2025-11-23 19:53:49] -rw-r--r--. 1 boincer umatlas      6878 Nov 23 19:46 init_data.xml
[2025-11-23 19:53:49] -rw-------. 1 boincer umatlas 924456581 Nov 23 19:52 HITS.47556137._001251.pool.root.1
[2025-11-23 19:53:49] -rw-------. 1 boincer umatlas        95 Nov 23 19:52 pilot_heartbeat.json
[2025-11-23 19:53:49] -rw-------. 1 boincer umatlas      1064 Nov 23 19:52 memory_monitor_summary.json
[2025-11-23 19:53:49] -rw-------. 1 boincer umatlas   1526164 Nov 23 19:53 agis_ddmendpoints.agis.ALL.json
[2025-11-23 19:53:49] -rw-------. 1 boincer umatlas   2661124 Nov 23 19:53 log.47556137._001251.job.log.tgz.1
[2025-11-23 19:53:49] -rw-------. 1 boincer umatlas      8644 Nov 23 19:53 heartbeat.json
[2025-11-23 19:53:49] -rw-r--r--. 1 boincer umatlas      8192 Nov 23 19:53 boinc_mmap_file
[2025-11-23 19:53:49] -rw-r--r--. 1 boincer umatlas        29 Nov 23 19:53 wrapper_checkpoint.txt
[2025-11-23 19:53:49] -rw-------. 1 boincer umatlas       823 Nov 23 19:53 pilotlog.txt
[2025-11-23 19:53:49] -rw-------. 1 boincer umatlas   8450333 Nov 23 19:53 log.47556137._001251.job.log.1
[2025-11-23 19:53:49] -rw-------. 1 boincer umatlas       353 Nov 23 19:53 output.list
[2025-11-23 19:53:49] -rw-r--r--. 1 boincer umatlas       620 Nov 23 19:53 runtime_log
[2025-11-23 19:53:49] -rw-------. 1 boincer umatlas  11130880 Nov 23 19:53 result.tar.gz
[2025-11-23 19:53:49] -rw-r--r--. 1 boincer umatlas      9355 Nov 23 19:53 runtime_log.err
[2025-11-23 19:53:49] -rw-------. 1 boincer umatlas       662 Nov 23 19:53 DSVLDmlKmg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmGnHKDmkgNi8m.diag
[2025-11-23 19:53:49] -rw-r--r--. 1 boincer umatlas     21149 Nov 23 19:53 stderr.txt
[2025-11-23 19:53:49] HITS file was successfully produced:
[2025-11-23 19:53:49] -rw-------. 1 boincer umatlas 924456581 Nov 23 19:52 shared/HITS.pool.root.1
[2025-11-23 19:53:49]  *** Contents of shared directory: ***
[2025-11-23 19:53:49] total 1315252
[2025-11-23 19:53:49] -rw-r--r--. 2 boincer umatlas 410606887 Nov 23 00:02 ATLAS.root_0
[2025-11-23 19:53:49] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:02 start_atlas.sh
[2025-11-23 19:53:49] -rw-r--r--. 2 boincer umatlas    590101 Nov 23 00:02 input.tar.gz
[2025-11-23 19:53:49] -rw-------. 1 boincer umatlas 924456581 Nov 23 19:52 HITS.pool.root.1
[2025-11-23 19:53:49] -rw-------. 1 boincer umatlas  11130880 Nov 23 19:53 result.tar.gz
19:53:50 (996738): run_atlas exited; CPU time 283524.381844
19:53:50 (996738): called boinc_finish(0)

</stderr_txt>
]]>

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