Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:10 (2874842): wrapper (7.7.26015): starting
00:03:10 (2874842): wrapper: running run_atlas (--nthreads 9)
[2025-11-23 00:03:10] Arguments: --nthreads 9
[2025-11-23 00:03:10] Threads: 9
[2025-11-23 00:03:10] Checking for CVMFS
[2025-11-23 00:03:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:03:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:03:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:03:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:03:12] 2.13.2.0 7688 28145 186656 153197 3 280 36424378 39288833 9432 16776704 0 18329295 99.596 18571230 35685 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 00:03:12] CVMFS is ok
[2025-11-23 00:03:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 00:03:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 00:03:12] Further information can be found at the LHC@home message board.
[2025-11-23 00:03:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:03:12] Checking for apptainer binary...
[2025-11-23 00:03:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:03:12] Running /usr/bin/apptainer --version
[2025-11-23 00:03:12] apptainer version 1.4.4-1.el9
[2025-11-23 00:03:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:03:13] c-210-1.aglt2.org
[2025-11-23 00:03:13] apptainer works
[2025-11-23 00:03:13] Set ATHENA_PROC_NUMBER=9
[2025-11-23 00:03:13] Set ATHENA_CORE_NUMBER=9
[2025-11-23 00:03:13] Starting ATLAS job with PandaID=6893881979
[2025-11-23 00:03:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 23:54:09]  *** The last 200 lines of the pilot log: ***
[2025-11-24 23:54:09] 2025-11-25 04:53:30,926 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:54:09] 2025-11-25 04:53:30,930 | INFO     | time since job start (172165s) is within the limit (172800.0s)
[2025-11-24 23:54:09] 2025-11-25 04:53:31,652 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 23:54:09] 2025-11-25 04:53:31,661 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.863499999999
[2025-11-24 23:54:09] 2025-11-25 04:53:31,670 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6893881979/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 23:54:09] 2025-11-25 04:53:31,671 | INFO     | extracted standard info from prmon json
[2025-11-24 23:54:09] 2025-11-25 04:53:31,671 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 23:54:09] 2025-11-25 04:53:31,672 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 23:54:09] 2025-11-25 04:53:31,740 | INFO     | fitting pss+swap vs Time
[2025-11-24 23:54:09] 2025-11-25 04:53:31,759 | INFO     | sum of square deviations: 6953871974140.5
[2025-11-24 23:54:09] 2025-11-25 04:53:32,042 | INFO     | sum of deviations: 22710576426066.332
[2025-11-24 23:54:09] 2025-11-25 04:53:32,042 | INFO     | mean x: 1763960379.8702128
[2025-11-24 23:54:09] 2025-11-25 04:53:32,043 | INFO     | mean y: 3104385.85035461
[2025-11-24 23:54:09] 2025-11-25 04:53:32,043 | INFO     | intersect: -5757795033.720418
[2025-11-24 23:54:09] 2025-11-25 04:53:32,048 | INFO     | chi2: 17.343834192477992
[2025-11-24 23:54:09] 2025-11-25 04:53:32,053 | INFO     | sum of square deviations: 6916954397872.246
[2025-11-24 23:54:09] 2025-11-25 04:53:32,267 | INFO     | sum of deviations: 23728778339569.305
[2025-11-24 23:54:09] 2025-11-25 04:53:32,267 | INFO     | mean x: 1763960227.3815274
[2025-11-24 23:54:09] 2025-11-25 04:53:32,268 | INFO     | mean y: 3108591.208170515
[2025-11-24 23:54:09] 2025-11-25 04:53:32,268 | INFO     | intersect: -6048199372.919542
[2025-11-24 23:54:09] 2025-11-25 04:53:32,274 | INFO     | chi2: 14.196260554672051
[2025-11-24 23:54:09] 2025-11-25 04:53:32,274 | INFO     | current chi2=14.196260554672051 (change=18.14808422909763 %)
[2025-11-24 23:54:09] 2025-11-25 04:53:32,274 | INFO     | right removable region: 2814
[2025-11-24 23:54:09] 2025-11-25 04:53:32,280 | INFO     | sum of square deviations: 6916943439832.241
[2025-11-24 23:54:09] 2025-11-25 04:53:32,487 | INFO     | sum of deviations: 21445881061034.41
[2025-11-24 23:54:09] 2025-11-25 04:53:32,488 | INFO     | mean x: 1763960532.3815274
[2025-11-24 23:54:09] 2025-11-25 04:53:32,488 | INFO     | mean y: 3109608.6923623444
[2025-11-24 23:54:09] 2025-11-25 04:53:32,488 | INFO     | intersect: -5466023990.979036
[2025-11-24 23:54:09] 2025-11-25 04:53:32,492 | INFO     | chi2: 12.875013155172235
[2025-11-24 23:54:09] 2025-11-25 04:53:32,493 | INFO     | current chi2=12.875013155172235 (change=25.76605027303525 %)
[2025-11-24 23:54:09] 2025-11-25 04:53:32,497 | INFO     | sum of square deviations: 6880145838210.767
[2025-11-24 23:54:09] 2025-11-25 04:53:32,720 | INFO     | sum of deviations: 20341695960120.19
[2025-11-24 23:54:09] 2025-11-25 04:53:32,721 | INFO     | mean x: 1763960684.8928826
[2025-11-24 23:54:09] 2025-11-25 04:53:32,721 | INFO     | mean y: 3114185.1234875447
[2025-11-24 23:54:09] 2025-11-25 04:53:32,721 | INFO     | intersect: -5212175255.169505
[2025-11-24 23:54:09] 2025-11-25 04:53:32,725 | INFO     | chi2: 9.581212403296297
[2025-11-24 23:54:09] 2025-11-25 04:53:32,725 | INFO     | current chi2=9.581212403296297 (change=25.582892321571965 %)
[2025-11-24 23:54:09] 2025-11-25 04:53:32,730 | INFO     | sum of square deviations: 6843480478369.802
[2025-11-24 23:54:09] 2025-11-25 04:53:32,954 | INFO     | time since job start (172167s) is within the limit (172800.0s)
[2025-11-24 23:54:09] 2025-11-25 04:53:33,084 | INFO     | sum of deviations: 19731850373637.71
[2025-11-24 23:54:09] 2025-11-25 04:53:33,084 | INFO     | mean x: 1763960837.4010694
[2025-11-24 23:54:09] 2025-11-25 04:53:33,084 | INFO     | mean y: 3116720.780748663
[2025-11-24 23:54:09] 2025-11-25 04:53:33,084 | INFO     | intersect: -5082922673.730075
[2025-11-24 23:54:09] 2025-11-25 04:53:33,089 | INFO     | chi2: 8.566818306363803
[2025-11-24 23:54:09] 2025-11-25 04:53:33,090 | INFO     | current chi2=8.566818306363803 (change=10.587325008925841 %)
[2025-11-24 23:54:09] 2025-11-25 04:53:33,090 | INFO     | left removable region: 30
[2025-11-24 23:54:09] 2025-11-25 04:53:33,094 | INFO     | sum of square deviations: 6690927268434.392
[2025-11-24 23:54:09] 2025-11-25 04:53:33,301 | INFO     | sum of deviations: 20183436201036.14
[2025-11-24 23:54:09] 2025-11-25 04:53:33,302 | INFO     | mean x: 1763961111.922773
[2025-11-24 23:54:09] 2025-11-25 04:53:33,302 | INFO     | mean y: 3125476.3308189656
[2025-11-24 23:54:09] 2025-11-25 04:53:33,302 | INFO     | intersect: -5317930206.274552
[2025-11-24 23:54:09] 2025-11-25 04:53:33,306 | INFO     | chi2: 4.212956515253927
[2025-11-24 23:54:09] 2025-11-25 04:53:33,307 | INFO     | current memory leak: 3.02 B/s (using 2784 data points, chi2=4.21)
[2025-11-24 23:54:09] 2025-11-25 04:53:33,310 | INFO     | could have reported an average CPU frequency of 2599 MHz (96 samples)
[2025-11-24 23:54:09] 2025-11-25 04:53:33,310 | INFO     | ..............................
[2025-11-24 23:54:09] 2025-11-25 04:53:33,311 | INFO     | . Timing measurements:
[2025-11-24 23:54:09] 2025-11-25 04:53:33,311 | INFO     | . get job = 0 s
[2025-11-24 23:54:09] 2025-11-25 04:53:33,311 | INFO     | . initial setup = 6 s
[2025-11-24 23:54:09] 2025-11-25 04:53:33,311 | INFO     | . payload setup = 42 s
[2025-11-24 23:54:09] 2025-11-25 04:53:33,311 | INFO     | . stage-in = 0 s
[2025-11-24 23:54:09] 2025-11-25 04:53:33,311 | INFO     | . payload execution = 172025 s
[2025-11-24 23:54:09] 2025-11-25 04:53:33,311 | INFO     | . stage-out = 5 s
[2025-11-24 23:54:09] 2025-11-25 04:53:33,311 | INFO     | . log creation = 1 s
[2025-11-24 23:54:09] 2025-11-25 04:53:33,311 | INFO     | ..............................
[2025-11-24 23:54:09] 2025-11-25 04:53:33,521 | INFO     | 
[2025-11-24 23:54:09] 2025-11-25 04:53:33,521 | INFO     | job summary report
[2025-11-24 23:54:09] 2025-11-25 04:53:33,521 | INFO     | --------------------------------------------------
[2025-11-24 23:54:09] 2025-11-25 04:53:33,521 | INFO     | PanDA job id: 6893881979
[2025-11-24 23:54:09] 2025-11-25 04:53:33,521 | INFO     | task id: 47523449
[2025-11-24 23:54:09] 2025-11-25 04:53:33,521 | INFO     | errors: (none)
[2025-11-24 23:54:09] 2025-11-25 04:53:33,522 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 23:54:09] 2025-11-25 04:53:33,522 | INFO     | pilot state: finished 
[2025-11-24 23:54:09] 2025-11-25 04:53:33,522 | INFO     | transexitcode: 0
[2025-11-24 23:54:09] 2025-11-25 04:53:33,522 | INFO     | exeerrorcode: 0
[2025-11-24 23:54:09] 2025-11-25 04:53:33,522 | INFO     | exeerrordiag: 
[2025-11-24 23:54:09] 2025-11-25 04:53:33,522 | INFO     | exitcode: 0
[2025-11-24 23:54:09] 2025-11-25 04:53:33,522 | INFO     | exitmsg: OK
[2025-11-24 23:54:09] 2025-11-25 04:53:33,522 | INFO     | cpuconsumptiontime: 316332 s
[2025-11-24 23:54:09] 2025-11-25 04:53:33,522 | INFO     | nevents: 1000
[2025-11-24 23:54:09] 2025-11-25 04:53:33,522 | INFO     | neventsw: 0
[2025-11-24 23:54:09] 2025-11-25 04:53:33,523 | INFO     | pid: 2901754
[2025-11-24 23:54:09] 2025-11-25 04:53:33,523 | INFO     | pgrp: 2901754
[2025-11-24 23:54:09] 2025-11-25 04:53:33,523 | INFO     | corecount: 9
[2025-11-24 23:54:09] 2025-11-25 04:53:33,523 | INFO     | event service: False
[2025-11-24 23:54:09] 2025-11-25 04:53:33,523 | INFO     | sizes: {0: 2298580, 1: 2298835, 12: 2298835, 23: 2298863, 34: 2298891, 36: 2299181, 45: 2299337, 172072: 2403718, 172078: 2413503, 172082: 2413559, 172092: 2413805
[2025-11-24 23:54:09] 2025-11-25 04:53:33,523 | INFO     | --------------------------------------------------
[2025-11-24 23:54:09] 2025-11-25 04:53:33,523 | INFO     | 
[2025-11-24 23:54:09] 2025-11-25 04:53:33,523 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-24 23:54:09] 2025-11-25 04:53:33,544 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 23:54:09] 2025-11-25 04:53:33,544 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 23:54:09] 2025-11-25 04:53:33,544 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 23:54:09] 2025-11-25 04:53:33,544 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 23:54:09] 2025-11-25 04:53:33,544 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 23:54:09] 2025-11-25 04:53:33,545 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 23:54:09] 2025-11-25 04:53:33,545 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 23:54:09] 2025-11-25 04:53:33,545 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 23:54:09] 2025-11-25 04:53:33,545 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 23:54:09] 2025-11-25 04:53:33,545 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 23:54:09] 2025-11-25 04:53:33,545 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 23:54:09] 2025-11-25 04:53:33,545 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 23:54:09] 2025-11-25 04:53:33,545 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 23:54:09] 2025-11-25 04:53:33,545 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 23:54:09] 2025-11-25 04:53:33,545 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 23:54:09] 2025-11-25 04:53:33,546 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 23:54:09] 2025-11-25 04:53:33,546 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 23:54:09] 2025-11-25 04:53:33,546 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 23:54:09] 2025-11-25 04:53:33,546 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 23:54:09] 2025-11-25 04:53:33,546 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 23:54:09] 2025-11-25 04:53:33,546 | INFO     | job 6893881979 has completed (purged errors)
[2025-11-24 23:54:09] 2025-11-25 04:53:33,546 | INFO     | overall cleanup function is called
[2025-11-24 23:54:09] 2025-11-25 04:53:34,565 | INFO     | --- collectZombieJob: --- 10, [2901754]
[2025-11-24 23:54:09] 2025-11-25 04:53:34,565 | INFO     | zombie collector waiting for pid 2901754
[2025-11-24 23:54:09] 2025-11-25 04:53:34,566 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 23:54:09] 2025-11-25 04:53:34,566 | INFO     | collected zombie processes
[2025-11-24 23:54:09] 2025-11-25 04:53:34,566 | INFO     | will attempt to kill all subprocesses of pid=2901754
[2025-11-24 23:54:09] 2025-11-25 04:53:35,086 | INFO     | process IDs to be killed: [2901754] (in reverse order)
[2025-11-24 23:54:09] 2025-11-25 04:53:35,268 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 23:54:09] 2025-11-25 04:53:35,287 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 23:54:09] 2025-11-25 04:53:35,314 | INFO     | did not find any defunct processes belonging to 2901754
[2025-11-24 23:54:09] 2025-11-25 04:53:35,326 | INFO     | did not find any defunct processes belonging to 2901754
[2025-11-24 23:54:09] 2025-11-25 04:53:35,327 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 23:54:09] 2025-11-25 04:53:35,327 | INFO     | ready for new job
[2025-11-24 23:54:09] 2025-11-25 04:53:35,328 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 23:54:09] 2025-11-25 04:53:35,339 | INFO     | ***************************************
[2025-11-24 23:54:09] 2025-11-25 04:53:35,339 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 23:54:09] 2025-11-25 04:53:35,339 | INFO     | ***************************************
[2025-11-24 23:54:09] 2025-11-25 04:53:35,339 | INFO     | 
[2025-11-24 23:54:09] 2025-11-25 04:53:35,341 | INFO     | architecture information:
[2025-11-24 23:54:09] 2025-11-25 04:53:35,342 | INFO     | executing command: cat /etc/os-release
[2025-11-24 23:54:09] 2025-11-25 04:53:35,362 | INFO     | cat /etc/os-release:
[2025-11-24 23:54:09] NAME="CentOS Linux"
[2025-11-24 23:54:09] VERSION="7 (Core)"
[2025-11-24 23:54:09] ID="centos"
[2025-11-24 23:54:09] ID_LIKE="rhel fedora"
[2025-11-24 23:54:09] VERSION_ID="7"
[2025-11-24 23:54:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 23:54:09] ANSI_COLOR="0;31"
[2025-11-24 23:54:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 23:54:09] HOME_URL="https://www.centos.org/"
[2025-11-24 23:54:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 23:54:09] 
[2025-11-24 23:54:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 23:54:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 23:54:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 23:54:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 23:54:09] 
[2025-11-24 23:54:09] 2025-11-25 04:53:35,363 | INFO     | ***************************************
[2025-11-24 23:54:09] 2025-11-25 04:53:35,868 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-24 23:54:09] 2025-11-25 04:53:36,022 | INFO     | sufficient remaining disk space (50750029824 B)
[2025-11-24 23:54:09] 2025-11-25 04:53:36,023 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 23:54:09] 2025-11-25 04:53:36,023 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 23:54:09] 2025-11-25 04:53:36,023 | INFO     | update_server=False
[2025-11-24 23:54:09] 2025-11-25 04:53:36,023 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 23:54:09] 2025-11-25 04:53:36,023 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 23:54:09] 2025-11-25 04:53:36,029 | INFO     | all data control threads have been joined
[2025-11-24 23:54:09] 2025-11-25 04:53:36,966 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:54:09] 2025-11-25 04:53:36,966 | INFO     | aborting loop
[2025-11-24 23:54:09] 2025-11-25 04:53:37,030 | INFO     | [job] retrieve thread has finished
[2025-11-24 23:54:09] 2025-11-25 04:53:37,036 | INFO     | [data] control thread has finished
[2025-11-24 23:54:09] 2025-11-25 04:53:37,071 | INFO     | [data] copytool_in thread has finished
[2025-11-24 23:54:09] 2025-11-25 04:53:37,368 | INFO     | all job control threads have been joined
[2025-11-24 23:54:09] 2025-11-25 04:53:37,402 | INFO     | [job] validate thread has finished
[2025-11-24 23:54:09] 2025-11-25 04:53:37,531 | INFO     | all payload control threads have been joined
[2025-11-24 23:54:09] 2025-11-25 04:53:37,650 | INFO     | [payload] failed_post thread has finished
[2025-11-24 23:54:09] 2025-11-25 04:53:37,972 | INFO     | [job] job monitor thread has finished
[2025-11-24 23:54:09] 2025-11-25 04:53:38,036 | INFO     | [data] copytool_out thread has finished
[2025-11-24 23:54:09] 2025-11-25 04:53:38,049 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 23:54:09] 2025-11-25 04:53:38,080 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 23:54:09] 2025-11-25 04:53:38,322 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 23:54:09] 2025-11-25 04:53:38,338 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 23:54:09] 2025-11-25 04:53:38,374 | INFO     | [job] control thread has finished
[2025-11-24 23:54:09] 2025-11-25 04:53:38,384 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 23:54:09] 2025-11-25 04:53:38,469 | INFO     | [payload] validate_post thread has finished
[2025-11-24 23:54:09] 2025-11-25 04:53:38,537 | INFO     | [payload] control thread has finished
[2025-11-24 23:54:09] 2025-11-25 04:53:38,539 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:54:09] 2025-11-25 04:53:39,545 | INFO     | [job] queue monitor thread has finished
[2025-11-24 23:54:09] 2025-11-25 04:53:41,087 | INFO     | [monitor] cgroup control has ended
[2025-11-24 23:54:09] 2025-11-25 04:53:42,092 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 23:54:09] 2025-11-25 04:53:43,923 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140420703663936)>', '<ExcThread(monitor, started 140419451053824)>']
[2025-11-24 23:54:09] 2025-11-25 04:53:48,949 | INFO     | all workflow threads have been joined
[2025-11-24 23:54:09] 2025-11-25 04:53:48,949 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 23:54:09] 2025-11-25 04:53:48,949 | INFO     | traces error code: 0
[2025-11-24 23:54:09] 2025-11-25 04:53:48,950 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 23:54:09] 2025-11-25 04:54:06,701 | INFO     | PID=2882537 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 23:54:09] 2025-11-25 04:54:06,702 | INFO     | .. there are 7 such processes running
[2025-11-24 23:54:09] 2025-11-25 04:54:06,706 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 23:54:09] 2025-11-25 04:54:06,706 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 23:54:09] 2025-11-25 04:54:06,706 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 23:54:09] 2025-11-25 04:54:06,706 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 23:54:09] 2025-11-25 04:54:06,706 | INFO     | [monitor] control thread has ended
[2025-11-24 23:54:09] 2025-11-25 04:54:07,076 [wrapper] ==== pilot stdout END ====
[2025-11-24 23:54:09] 2025-11-25 04:54:07,091 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 23:54:09] 2025-11-25 04:54:07,120 [wrapper] pilotpid: 2882537
[2025-11-24 23:54:09] 2025-11-25 04:54:07,147 [wrapper] Pilot exit status: 0
[2025-11-24 23:54:09] 2025-11-25 04:54:07,284 [wrapper] pandaids: 6893881979
[2025-11-24 23:54:09] 2025-11-25 04:54:07,636 [wrapper] cleanup supervisor_pilot 2575657 2882538
[2025-11-24 23:54:09] 2025-11-25 04:54:07,648 [wrapper] Test setup, not cleaning
[2025-11-24 23:54:09] 2025-11-25 04:54:07,665 [wrapper] apfmon messages muted
[2025-11-24 23:54:09] 2025-11-25 04:54:07,706 [wrapper] ==== wrapper stdout END ====
[2025-11-24 23:54:09] 2025-11-25 04:54:07,744 [wrapper] ==== wrapper stderr END ====
[2025-11-24 23:54:09]  *** Error codes and diagnostics ***
[2025-11-24 23:54:09]     "exeErrorCode": 0,
[2025-11-24 23:54:09]     "exeErrorDiag": "",
[2025-11-24 23:54:09]     "pilotErrorCode": 0,
[2025-11-24 23:54:09]     "pilotErrorDiag": "",
[2025-11-24 23:54:09]  *** Listing of results directory ***
[2025-11-24 23:54:09] total 1341076
[2025-11-24 23:54:09] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 15:07 pilot3.tar.gz
[2025-11-24 23:54:09] -rwx------. 1 boincer umatlas     36292 Nov 20 15:33 runpilot2-wrapper.sh
[2025-11-24 23:54:09] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 15:33 queuedata.json
[2025-11-24 23:54:09] -rw-r--r--. 1 boincer umatlas       100 Nov 23 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 23:54:09] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 00:03 run_atlas
[2025-11-24 23:54:09] -rw-r--r--. 1 boincer umatlas       105 Nov 23 00:03 job.xml
[2025-11-24 23:54:09] -rw-r--r--. 2 boincer umatlas 410655749 Nov 23 00:03 EVNT.47493127._000885.pool.root.1
[2025-11-24 23:54:09] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:03 start_atlas.sh
[2025-11-24 23:54:09] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 00:03 shared
[2025-11-24 23:54:09] -rw-r--r--. 2 boincer umatlas    590102 Nov 23 00:03 input.tar.gz
[2025-11-24 23:54:09] -rw-r--r--. 1 boincer umatlas         0 Nov 23 00:03 boinc_lockfile
[2025-11-24 23:54:09] -rw-r--r--. 1 boincer umatlas      2786 Nov 23 00:03 pandaJob.out
[2025-11-24 23:54:09] -rw-------. 1 boincer umatlas        57 Nov 23 00:03 setup.sh.local
[2025-11-24 23:54:09] -rw-------. 1 boincer umatlas    989784 Nov 23 00:04 agis_schedconf.cvmfs.json
[2025-11-24 23:54:09] drwx------. 5 boincer umatlas      4096 Nov 23 00:04 pilot3
[2025-11-24 23:54:09] -rw-r--r--. 1 boincer umatlas       533 Nov 24 23:34 boinc_task_state.xml
[2025-11-24 23:54:09] -rw-r--r--. 1 boincer umatlas      6661 Nov 24 23:45 init_data.xml
[2025-11-24 23:54:09] -rw-------. 1 boincer umatlas 909125533 Nov 24 23:52 HITS.47523449._008847.pool.root.1
[2025-11-24 23:54:09] -rw-------. 1 boincer umatlas      1067 Nov 24 23:53 memory_monitor_summary.json
[2025-11-24 23:54:09] -rw-------. 1 boincer umatlas   1516227 Nov 24 23:53 agis_ddmendpoints.agis.ALL.json
[2025-11-24 23:54:09] -rw-------. 1 boincer umatlas   3522536 Nov 24 23:53 log.47523449._008847.job.log.tgz.1
[2025-11-24 23:54:09] -rw-------. 1 boincer umatlas      8648 Nov 24 23:53 heartbeat.json
[2025-11-24 23:54:09] -rw-r--r--. 1 boincer umatlas        29 Nov 24 23:54 wrapper_checkpoint.txt
[2025-11-24 23:54:09] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 23:54 boinc_mmap_file
[2025-11-24 23:54:09] -rw-------. 1 boincer umatlas        95 Nov 24 23:54 pilot_heartbeat.json
[2025-11-24 23:54:09] -rw-------. 1 boincer umatlas       822 Nov 24 23:54 pilotlog.txt
[2025-11-24 23:54:09] -rw-------. 1 boincer umatlas  21264197 Nov 24 23:54 log.47523449._008847.job.log.1
[2025-11-24 23:54:09] -rw-------. 1 boincer umatlas       353 Nov 24 23:54 output.list
[2025-11-24 23:54:09] -rw-r--r--. 1 boincer umatlas       620 Nov 24 23:54 runtime_log
[2025-11-24 23:54:09] -rw-------. 1 boincer umatlas  24801280 Nov 24 23:54 result.tar.gz
[2025-11-24 23:54:09] -rw-r--r--. 1 boincer umatlas      9339 Nov 24 23:54 runtime_log.err
[2025-11-24 23:54:09] -rw-------. 1 boincer umatlas       663 Nov 24 23:54 oMVLDmTWQg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmj4GKDm89xzKm.diag
[2025-11-24 23:54:09] -rw-r--r--. 1 boincer umatlas     21319 Nov 24 23:54 stderr.txt
[2025-11-24 23:54:09] HITS file was successfully produced:
[2025-11-24 23:54:09] -rw-------. 1 boincer umatlas 909125533 Nov 24 23:52 shared/HITS.pool.root.1
[2025-11-24 23:54:09]  *** Contents of shared directory: ***
[2025-11-24 23:54:09] total 1313676
[2025-11-24 23:54:09] -rw-r--r--. 2 boincer umatlas 410655749 Nov 23 00:03 ATLAS.root_0
[2025-11-24 23:54:09] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 00:03 start_atlas.sh
[2025-11-24 23:54:09] -rw-r--r--. 2 boincer umatlas    590102 Nov 23 00:03 input.tar.gz
[2025-11-24 23:54:09] -rw-------. 1 boincer umatlas 909125533 Nov 24 23:52 HITS.pool.root.1
[2025-11-24 23:54:09] -rw-------. 1 boincer umatlas  24801280 Nov 24 23:54 result.tar.gz
23:54:11 (2874842): run_atlas exited; CPU time 319365.139301
23:54:11 (2874842): called boinc_finish(0)

</stderr_txt>
]]>

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