Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:02:45 (3906097): wrapper (7.7.26015): starting
12:02:45 (3906097): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 12:02:45] Arguments: --nthreads 8
[2025-11-23 12:02:45] Threads: 8
[2025-11-23 12:02:45] Checking for CVMFS
[2025-11-23 12:02:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 12:02:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 12:02:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 12:02:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 12:02:46] 2.13.2.0 7688 28865 180500 153215 0 172 26857190 39288832 7296 16776704 0 19681657 99.608 19270079 35449 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-23 12:02:46] CVMFS is ok
[2025-11-23 12:02:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 12:02:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 12:02:46] Further information can be found at the LHC@home message board.
[2025-11-23 12:02:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 12:02:46] Checking for apptainer binary...
[2025-11-23 12:02:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 12:02:46] Running /usr/bin/apptainer --version
[2025-11-23 12:02:47] apptainer version 1.4.4-1.el9
[2025-11-23 12:02:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 12:02:48] c-210-1.aglt2.org
[2025-11-23 12:02:48] apptainer works
[2025-11-23 12:02:48] Set ATHENA_PROC_NUMBER=8
[2025-11-23 12:02:48] Set ATHENA_CORE_NUMBER=8
[2025-11-23 12:02:48] Starting ATLAS job with PandaID=6893881914
[2025-11-23 12:02:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 09:11:41]  *** The last 200 lines of the pilot log: ***
[2025-11-25 09:11:41] 2025-11-25 14:10:38,201 | INFO     | monitor loop #9288: job 0:6893881914 is in state 'finished'
[2025-11-25 09:11:41] 2025-11-25 14:10:38,201 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 09:11:41] 2025-11-25 14:10:38,250 | INFO     | time since job start (162440s) is within the limit (172800.0s)
[2025-11-25 09:11:41] 2025-11-25 14:10:40,257 | INFO     | time since job start (162442s) is within the limit (172800.0s)
[2025-11-25 09:11:41] 2025-11-25 14:10:40,706 | INFO     | monitor loop #9289: job 0:6893881914 is in state 'finished'
[2025-11-25 09:11:41] 2025-11-25 14:10:40,706 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 09:11:41] 2025-11-25 14:10:42,272 | INFO     | time since job start (162444s) is within the limit (172800.0s)
[2025-11-25 09:11:41] 2025-11-25 14:10:43,210 | INFO     | monitor loop #9290: job 0:6893881914 is in state 'finished'
[2025-11-25 09:11:41] 2025-11-25 14:10:43,210 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 09:11:41] 2025-11-25 14:10:44,280 | INFO     | time since job start (162446s) is within the limit (172800.0s)
[2025-11-25 09:11:41] 2025-11-25 14:10:45,391 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 09:11:41] 2025-11-25 14:10:45,398 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.863975
[2025-11-25 09:11:41] 2025-11-25 14:10:45,405 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893881914/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 09:11:41] 2025-11-25 14:10:45,406 | INFO     | extracted standard info from prmon json
[2025-11-25 09:11:41] 2025-11-25 14:10:45,406 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 09:11:41] 2025-11-25 14:10:45,406 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 09:11:41] 2025-11-25 14:10:45,454 | INFO     | fitting pss+swap vs Time
[2025-11-25 09:11:41] 2025-11-25 14:10:45,458 | INFO     | sum of square deviations: 5849960817681.882
[2025-11-25 09:11:41] 2025-11-25 14:10:45,722 | INFO     | monitor loop #9291: job 0:6893881914 is in state 'finished'
[2025-11-25 09:11:41] 2025-11-25 14:10:45,722 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 09:11:41] 2025-11-25 14:10:46,114 | INFO     | sum of deviations: 13058719054251.809
[2025-11-25 09:11:41] 2025-11-25 14:10:46,115 | INFO     | mean x: 1763998633.366266
[2025-11-25 09:11:41] 2025-11-25 14:10:46,115 | INFO     | mean y: 2951145.7622088655
[2025-11-25 09:11:41] 2025-11-25 14:10:46,115 | INFO     | intersect: -3934778231.0889564
[2025-11-25 09:11:41] 2025-11-25 14:10:46,162 | INFO     | chi2: 13.1084076000376
[2025-11-25 09:11:41] 2025-11-25 14:10:46,210 | INFO     | sum of square deviations: 5817067071920.259
[2025-11-25 09:11:41] 2025-11-25 14:10:46,347 | INFO     | time since job start (162448s) is within the limit (172800.0s)
[2025-11-25 09:11:41] 2025-11-25 14:10:47,365 | INFO     | sum of deviations: 13950556610724.379
[2025-11-25 09:11:41] 2025-11-25 14:10:47,371 | INFO     | mean x: 1763998480.876176
[2025-11-25 09:11:41] 2025-11-25 14:10:47,371 | INFO     | mean y: 2955279.8035378247
[2025-11-25 09:11:41] 2025-11-25 14:10:47,371 | INFO     | intersect: -4227486000.044274
[2025-11-25 09:11:41] 2025-11-25 14:10:47,375 | INFO     | chi2: 10.09719998916072
[2025-11-25 09:11:41] 2025-11-25 14:10:47,375 | INFO     | current chi2=10.09719998916072 (change=22.971574448663336 %)
[2025-11-25 09:11:41] 2025-11-25 14:10:47,375 | INFO     | right removable region: 2656
[2025-11-25 09:11:41] 2025-11-25 14:10:47,386 | INFO     | sum of square deviations: 5817054785196.752
[2025-11-25 09:11:41] 2025-11-25 14:10:48,323 | INFO     | monitor loop #9292: job 0:6893881914 is in state 'finished'
[2025-11-25 09:11:41] 2025-11-25 14:10:48,323 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 09:11:41] 2025-11-25 14:10:48,326 | INFO     | sum of deviations: 12158270130811.006
[2025-11-25 09:11:41] 2025-11-25 14:10:48,326 | INFO     | mean x: 1763998785.8848326
[2025-11-25 09:11:41] 2025-11-25 14:10:48,327 | INFO     | mean y: 2955318.4019570947
[2025-11-25 09:11:41] 2025-11-25 14:10:48,327 | INFO     | intersect: -3683991863.836937
[2025-11-25 09:11:41] 2025-11-25 14:10:48,331 | INFO     | chi2: 10.292970144098499
[2025-11-25 09:11:41] 2025-11-25 14:10:48,331 | INFO     | current chi2=10.292970144098499 (change=21.478104296444254 %)
[2025-11-25 09:11:41] 2025-11-25 14:10:48,331 | INFO     | left removable region: 10
[2025-11-25 09:11:41] 2025-11-25 14:10:48,335 | INFO     | sum of square deviations: 5745111543917.86
[2025-11-25 09:11:41] 2025-11-25 14:10:48,615 | INFO     | sum of deviations: 12896953624150.701
[2025-11-25 09:11:41] 2025-11-25 14:10:48,619 | INFO     | mean x: 1763998755.4138322
[2025-11-25 09:11:41] 2025-11-25 14:10:48,620 | INFO     | mean y: 2961752.7354497355
[2025-11-25 09:11:41] 2025-11-25 14:10:48,620 | INFO     | intersect: -3956963127.3509192
[2025-11-25 09:11:41] 2025-11-25 14:10:48,623 | INFO     | chi2: 6.42223755626991
[2025-11-25 09:11:41] 2025-11-25 14:10:48,624 | INFO     | current memory leak: 2.24 B/s (using 2646 data points, chi2=6.42)
[2025-11-25 09:11:41] 2025-11-25 14:10:48,626 | INFO     | could have reported an average CPU frequency of 2599 MHz (91 samples)
[2025-11-25 09:11:41] 2025-11-25 14:10:48,626 | INFO     | ..............................
[2025-11-25 09:11:41] 2025-11-25 14:10:48,626 | INFO     | . Timing measurements:
[2025-11-25 09:11:41] 2025-11-25 14:10:48,626 | INFO     | . get job = 0 s
[2025-11-25 09:11:41] 2025-11-25 14:10:48,626 | INFO     | . initial setup = 3 s
[2025-11-25 09:11:41] 2025-11-25 14:10:48,626 | INFO     | . payload setup = 16 s
[2025-11-25 09:11:41] 2025-11-25 14:10:48,627 | INFO     | . stage-in = 0 s
[2025-11-25 09:11:41] 2025-11-25 14:10:48,627 | INFO     | . payload execution = 162365 s
[2025-11-25 09:11:41] 2025-11-25 14:10:48,627 | INFO     | . stage-out = 7 s
[2025-11-25 09:11:41] 2025-11-25 14:10:48,627 | INFO     | . log creation = 2 s
[2025-11-25 09:11:41] 2025-11-25 14:10:48,627 | INFO     | ..............................
[2025-11-25 09:11:41] 2025-11-25 14:10:48,785 | INFO     | 
[2025-11-25 09:11:41] 2025-11-25 14:10:48,786 | INFO     | job summary report
[2025-11-25 09:11:41] 2025-11-25 14:10:48,786 | INFO     | --------------------------------------------------
[2025-11-25 09:11:41] 2025-11-25 14:10:48,786 | INFO     | PanDA job id: 6893881914
[2025-11-25 09:11:41] 2025-11-25 14:10:48,786 | INFO     | task id: 47523449
[2025-11-25 09:11:41] 2025-11-25 14:10:48,786 | INFO     | errors: (none)
[2025-11-25 09:11:41] 2025-11-25 14:10:48,786 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 09:11:41] 2025-11-25 14:10:48,786 | INFO     | pilot state: finished 
[2025-11-25 09:11:41] 2025-11-25 14:10:48,786 | INFO     | transexitcode: 0
[2025-11-25 09:11:41] 2025-11-25 14:10:48,786 | INFO     | exeerrorcode: 0
[2025-11-25 09:11:41] 2025-11-25 14:10:48,786 | INFO     | exeerrordiag: 
[2025-11-25 09:11:41] 2025-11-25 14:10:48,786 | INFO     | exitcode: 0
[2025-11-25 09:11:41] 2025-11-25 14:10:48,787 | INFO     | exitmsg: OK
[2025-11-25 09:11:41] 2025-11-25 14:10:48,787 | INFO     | cpuconsumptiontime: 311739 s
[2025-11-25 09:11:41] 2025-11-25 14:10:48,787 | INFO     | nevents: 1000
[2025-11-25 09:11:41] 2025-11-25 14:10:48,787 | INFO     | neventsw: 0
[2025-11-25 09:11:41] 2025-11-25 14:10:48,787 | INFO     | pid: 3920799
[2025-11-25 09:11:41] 2025-11-25 14:10:48,787 | INFO     | pgrp: 3920799
[2025-11-25 09:11:41] 2025-11-25 14:10:48,787 | INFO     | corecount: 8
[2025-11-25 09:11:41] 2025-11-25 14:10:48,787 | INFO     | event service: False
[2025-11-25 09:11:41] 2025-11-25 14:10:48,787 | INFO     | sizes: {0: 2298585, 1: 2298784, 12: 2298784, 15: 2299074, 23: 2299102, 162387: 2397731, 162394: 2407521, 162395: 2407577, 162415: 2407823}
[2025-11-25 09:11:41] 2025-11-25 14:10:48,787 | INFO     | --------------------------------------------------
[2025-11-25 09:11:41] 2025-11-25 14:10:48,788 | INFO     | 
[2025-11-25 09:11:41] 2025-11-25 14:10:48,788 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 09:11:41] 2025-11-25 14:10:48,866 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 09:11:41] 2025-11-25 14:10:48,867 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 09:11:41] 2025-11-25 14:10:48,867 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 09:11:41] 2025-11-25 14:10:48,867 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 09:11:41] 2025-11-25 14:10:48,867 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 09:11:41] 2025-11-25 14:10:48,867 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 09:11:41] 2025-11-25 14:10:48,867 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 09:11:41] 2025-11-25 14:10:48,867 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 09:11:41] 2025-11-25 14:10:48,868 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 09:11:41] 2025-11-25 14:10:48,868 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 09:11:41] 2025-11-25 14:10:48,868 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 09:11:41] 2025-11-25 14:10:48,868 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 09:11:41] 2025-11-25 14:10:48,868 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 09:11:41] 2025-11-25 14:10:48,868 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 09:11:41] 2025-11-25 14:10:48,868 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 09:11:41] 2025-11-25 14:10:48,868 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 09:11:41] 2025-11-25 14:10:48,868 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 09:11:41] 2025-11-25 14:10:48,869 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 09:11:41] 2025-11-25 14:10:48,869 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 09:11:41] 2025-11-25 14:10:48,869 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 09:11:41] 2025-11-25 14:10:48,869 | INFO     | job 6893881914 has completed (purged errors)
[2025-11-25 09:11:41] 2025-11-25 14:10:48,869 | INFO     | overall cleanup function is called
[2025-11-25 09:11:41] 2025-11-25 14:10:48,930 | INFO     | PID=3913733 has CPU usage=8.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 09:11:41] 2025-11-25 14:10:48,930 | INFO     | .. there are 9 such processes running
[2025-11-25 09:11:41] 2025-11-25 14:10:49,923 | INFO     | --- collectZombieJob: --- 10, [3920799]
[2025-11-25 09:11:41] 2025-11-25 14:10:49,923 | INFO     | zombie collector waiting for pid 3920799
[2025-11-25 09:11:41] 2025-11-25 14:10:49,923 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 09:11:41] 2025-11-25 14:10:49,923 | INFO     | collected zombie processes
[2025-11-25 09:11:41] 2025-11-25 14:10:49,923 | INFO     | will attempt to kill all subprocesses of pid=3920799
[2025-11-25 09:11:41] 2025-11-25 14:10:51,685 | INFO     | process IDs to be killed: [3920799] (in reverse order)
[2025-11-25 09:11:41] 2025-11-25 14:10:51,882 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 09:11:41] 2025-11-25 14:10:51,887 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 09:11:41] 2025-11-25 14:10:51,900 | INFO     | did not find any defunct processes belonging to 3920799
[2025-11-25 09:11:41] 2025-11-25 14:10:51,918 | INFO     | did not find any defunct processes belonging to 3920799
[2025-11-25 09:11:41] 2025-11-25 14:10:51,923 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 09:11:41] 2025-11-25 14:10:51,923 | INFO     | ready for new job
[2025-11-25 09:11:41] 2025-11-25 14:10:51,923 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 09:11:41] 2025-11-25 14:10:51,945 | INFO     | ***************************************
[2025-11-25 09:11:41] 2025-11-25 14:10:51,946 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 09:11:41] 2025-11-25 14:10:51,946 | INFO     | ***************************************
[2025-11-25 09:11:41] 2025-11-25 14:10:51,946 | INFO     | 
[2025-11-25 09:11:41] 2025-11-25 14:10:51,948 | INFO     | architecture information:
[2025-11-25 09:11:41] 2025-11-25 14:10:51,951 | INFO     | executing command: cat /etc/os-release
[2025-11-25 09:11:41] 2025-11-25 14:10:51,996 | INFO     | cat /etc/os-release:
[2025-11-25 09:11:41] NAME="CentOS Linux"
[2025-11-25 09:11:41] VERSION="7 (Core)"
[2025-11-25 09:11:41] ID="centos"
[2025-11-25 09:11:41] ID_LIKE="rhel fedora"
[2025-11-25 09:11:41] VERSION_ID="7"
[2025-11-25 09:11:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 09:11:41] ANSI_COLOR="0;31"
[2025-11-25 09:11:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 09:11:41] HOME_URL="https://www.centos.org/"
[2025-11-25 09:11:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 09:11:41] 
[2025-11-25 09:11:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 09:11:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 09:11:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 09:11:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 09:11:41] 
[2025-11-25 09:11:41] 2025-11-25 14:10:51,996 | INFO     | ***************************************
[2025-11-25 09:11:41] 2025-11-25 14:10:52,499 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 09:11:41] 2025-11-25 14:10:52,521 | INFO     | sufficient remaining disk space (49584013312 B)
[2025-11-25 09:11:41] 2025-11-25 14:10:52,522 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 09:11:41] 2025-11-25 14:10:52,522 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 09:11:41] 2025-11-25 14:10:52,522 | INFO     | update_server=False
[2025-11-25 09:11:41] 2025-11-25 14:10:52,522 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 09:11:41] 2025-11-25 14:10:52,522 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 09:11:41] 2025-11-25 14:10:52,523 | INFO     | aborting loop
[2025-11-25 09:11:41] 2025-11-25 14:10:52,523 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 09:11:41] 2025-11-25 14:10:52,742 | INFO     | all data control threads have been joined
[2025-11-25 09:11:41] 2025-11-25 14:10:52,942 | INFO     | all payload control threads have been joined
[2025-11-25 09:11:41] 2025-11-25 14:10:53,528 | INFO     | [job] retrieve thread has finished
[2025-11-25 09:11:41] 2025-11-25 14:10:53,530 | INFO     | [job] job monitor thread has finished
[2025-11-25 09:11:41] 2025-11-25 14:10:53,591 | INFO     | [data] copytool_in thread has finished
[2025-11-25 09:11:41] 2025-11-25 14:10:53,600 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 09:11:41] 2025-11-25 14:10:53,748 | INFO     | [data] control thread has finished
[2025-11-25 09:11:41] 2025-11-25 14:10:53,806 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 09:11:41] 2025-11-25 14:10:53,833 | INFO     | [job] validate thread has finished
[2025-11-25 09:11:41] 2025-11-25 14:10:53,843 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 09:11:41] 2025-11-25 14:10:53,847 | INFO     | [payload] validate_post thread has finished
[2025-11-25 09:11:41] 2025-11-25 14:10:53,854 | INFO     | [payload] failed_post thread has finished
[2025-11-25 09:11:41] 2025-11-25 14:10:53,949 | INFO     | [payload] control thread has finished
[2025-11-25 09:11:41] 2025-11-25 14:10:53,961 | INFO     | all job control threads have been joined
[2025-11-25 09:11:41] 2025-11-25 14:10:54,276 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 09:11:41] 2025-11-25 14:10:54,338 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 09:11:41] 2025-11-25 14:10:54,448 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 09:11:41] 2025-11-25 14:10:54,535 | INFO     | [data] copytool_out thread has finished
[2025-11-25 09:11:41] 2025-11-25 14:10:54,812 | INFO     | [job] queue monitor thread has finished
[2025-11-25 09:11:41] 2025-11-25 14:10:54,967 | INFO     | [job] control thread has finished
[2025-11-25 09:11:41] 2025-11-25 14:10:58,285 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 09:11:41] 2025-11-25 14:11:21,382 | INFO     | PID=3913733 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 09:11:41] 2025-11-25 14:11:21,383 | INFO     | .. there are 9 such processes running
[2025-11-25 09:11:41] 2025-11-25 14:11:21,383 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 09:11:41] 2025-11-25 14:11:21,383 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 09:11:41] 2025-11-25 14:11:21,383 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 09:11:41] 2025-11-25 14:11:33,745 | INFO     | [monitor] cgroup control has ended
[2025-11-25 09:11:41] 2025-11-25 14:11:35,745 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140005132445504)>', '<ExcThread(monitor, started 140004609201920)>']
[2025-11-25 09:11:41] 2025-11-25 14:11:36,528 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 09:11:41] 2025-11-25 14:11:36,528 | INFO     | [monitor] control thread has ended
[2025-11-25 09:11:41] 2025-11-25 14:11:40,771 | INFO     | all workflow threads have been joined
[2025-11-25 09:11:41] 2025-11-25 14:11:40,771 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 09:11:41] 2025-11-25 14:11:40,771 | INFO     | traces error code: 0
[2025-11-25 09:11:41] 2025-11-25 14:11:40,772 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 09:11:41] 2025-11-25 14:11:40,949 [wrapper] ==== pilot stdout END ====
[2025-11-25 09:11:41] 2025-11-25 14:11:40,952 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 09:11:41] 2025-11-25 14:11:40,955 [wrapper] pilotpid: 3913733
[2025-11-25 09:11:41] 2025-11-25 14:11:40,958 [wrapper] Pilot exit status: 0
[2025-11-25 09:11:41] 2025-11-25 14:11:40,976 [wrapper] pandaids: 6893881914
[2025-11-25 09:11:41] 2025-11-25 14:11:41,028 [wrapper] cleanup supervisor_pilot 3459148 3913734
[2025-11-25 09:11:41] 2025-11-25 14:11:41,032 [wrapper] Test setup, not cleaning
[2025-11-25 09:11:41] 2025-11-25 14:11:41,035 [wrapper] apfmon messages muted
[2025-11-25 09:11:41] 2025-11-25 14:11:41,039 [wrapper] ==== wrapper stdout END ====
[2025-11-25 09:11:41] 2025-11-25 14:11:41,046 [wrapper] ==== wrapper stderr END ====
[2025-11-25 09:11:41]  *** Error codes and diagnostics ***
[2025-11-25 09:11:41]     "exeErrorCode": 0,
[2025-11-25 09:11:41]     "exeErrorDiag": "",
[2025-11-25 09:11:41]     "pilotErrorCode": 0,
[2025-11-25 09:11:41]     "pilotErrorDiag": "",
[2025-11-25 09:11:41]  *** Listing of results directory ***
[2025-11-25 09:11:41] total 1348672
[2025-11-25 09:11:41] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 15:07 pilot3.tar.gz
[2025-11-25 09:11:41] -rwx------. 1 boincer umatlas     36292 Nov 20 15:27 runpilot2-wrapper.sh
[2025-11-25 09:11:41] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 15:27 queuedata.json
[2025-11-25 09:11:41] -rw-r--r--. 1 boincer umatlas       100 Nov 23 12:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 09:11:41] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 23 12:02 run_atlas
[2025-11-25 09:11:41] -rw-r--r--. 1 boincer umatlas       105 Nov 23 12:02 job.xml
[2025-11-25 09:11:41] -rw-r--r--. 2 boincer umatlas 409014768 Nov 23 12:02 EVNT.47493127._000880.pool.root.1
[2025-11-25 09:11:41] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 12:02 start_atlas.sh
[2025-11-25 09:11:41] drwxrwx--x. 2 boincer umatlas      4096 Nov 23 12:02 shared
[2025-11-25 09:11:41] -rw-r--r--. 2 boincer umatlas    590103 Nov 23 12:02 input.tar.gz
[2025-11-25 09:11:41] -rw-r--r--. 1 boincer umatlas         0 Nov 23 12:02 boinc_lockfile
[2025-11-25 09:11:41] -rw-r--r--. 1 boincer umatlas      2785 Nov 23 12:02 pandaJob.out
[2025-11-25 09:11:41] -rw-------. 1 boincer umatlas        57 Nov 23 12:02 setup.sh.local
[2025-11-25 09:11:41] -rw-------. 1 boincer umatlas    989785 Nov 23 12:03 agis_schedconf.cvmfs.json
[2025-11-25 09:11:41] drwx------. 5 boincer umatlas      4096 Nov 23 12:03 pilot3
[2025-11-25 09:11:41] -rw-r--r--. 1 boincer umatlas       533 Nov 25 08:49 boinc_task_state.xml
[2025-11-25 09:11:41] -rw-------. 1 boincer umatlas 921717833 Nov 25 09:09 HITS.47523449._008799.pool.root.1
[2025-11-25 09:11:41] -rw-------. 1 boincer umatlas      1072 Nov 25 09:10 memory_monitor_summary.json
[2025-11-25 09:11:41] -rw-------. 1 boincer umatlas   1516240 Nov 25 09:10 agis_ddmendpoints.agis.ALL.json
[2025-11-25 09:11:41] -rw-------. 1 boincer umatlas   3283197 Nov 25 09:10 log.47523449._008799.job.log.tgz.1
[2025-11-25 09:11:41] -rw-------. 1 boincer umatlas        95 Nov 25 09:10 pilot_heartbeat.json
[2025-11-25 09:11:41] -rw-------. 1 boincer umatlas      8619 Nov 25 09:10 heartbeat.json
[2025-11-25 09:11:41] -rw-r--r--. 1 boincer umatlas      6661 Nov 25 09:11 init_data.xml
[2025-11-25 09:11:41] -rw-r--r--. 1 boincer umatlas        29 Nov 25 09:11 wrapper_checkpoint.txt
[2025-11-25 09:11:41] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 09:11 boinc_mmap_file
[2025-11-25 09:11:41] -rw-------. 1 boincer umatlas      4823 Nov 25 09:11 pilotlog.txt
[2025-11-25 09:11:41] -rw-------. 1 boincer umatlas  19912857 Nov 25 09:11 log.47523449._008799.job.log.1
[2025-11-25 09:11:41] -rw-------. 1 boincer umatlas       353 Nov 25 09:11 output.list
[2025-11-25 09:11:41] -rw-r--r--. 1 boincer umatlas       620 Nov 25 09:11 runtime_log
[2025-11-25 09:11:41] -rw-------. 1 boincer umatlas  23214080 Nov 25 09:11 result.tar.gz
[2025-11-25 09:11:41] -rw-r--r--. 1 boincer umatlas      9339 Nov 25 09:11 runtime_log.err
[2025-11-25 09:11:41] -rw-------. 1 boincer umatlas       662 Nov 25 09:11 35ALDmlQQg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmVIKDm8APIfn.diag
[2025-11-25 09:11:41] -rw-r--r--. 1 boincer umatlas     21864 Nov 25 09:11 stderr.txt
[2025-11-25 09:11:41] HITS file was successfully produced:
[2025-11-25 09:11:41] -rw-------. 1 boincer umatlas 921717833 Nov 25 09:09 shared/HITS.pool.root.1
[2025-11-25 09:11:41]  *** Contents of shared directory: ***
[2025-11-25 09:11:41] total 1322820
[2025-11-25 09:11:41] -rw-r--r--. 2 boincer umatlas 409014768 Nov 23 12:02 ATLAS.root_0
[2025-11-25 09:11:41] -rw-r--r--. 2 boincer umatlas     15847 Nov 23 12:02 start_atlas.sh
[2025-11-25 09:11:41] -rw-r--r--. 2 boincer umatlas    590103 Nov 23 12:02 input.tar.gz
[2025-11-25 09:11:41] -rw-------. 1 boincer umatlas 921717833 Nov 25 09:09 HITS.pool.root.1
[2025-11-25 09:11:41] -rw-------. 1 boincer umatlas  23214080 Nov 25 09:11 result.tar.gz
09:11:42 (3906097): run_atlas exited; CPU time 314389.424461
09:11:42 (3906097): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN